ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RWDD1_RAT (Q99ND9) RWD domain-containing protein 1 (Small androg... 45 3e-04
2RWDD1_MOUSE (Q9CQK7) RWD domain-containing protein 1 (IH1) 45 3e-04
3RWDD1_HUMAN (Q9H446) RWD domain-containing protein 1 44 6e-04
4GIR2_YEAST (Q03768) Protein GIR2 36 0.12

>RWDD1_RAT (Q99ND9) RWD domain-containing protein 1 (Small androgen|
           receptor-interacting protein)
          Length = 243

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = -1

Query: 615 HGEAVTVESFMAWRERFEAELALQRAKLMPESALTAPKEKKLSGRQYFESGRHI 454
           HG  VT+E+F++W+ +F+AEL   + K M E       + KLSG+Q FE+  ++
Sbjct: 142 HGTPVTIENFLSWKAKFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFETDHNL 193



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>RWDD1_MOUSE (Q9CQK7) RWD domain-containing protein 1 (IH1)|
          Length = 243

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = -1

Query: 615 HGEAVTVESFMAWRERFEAELALQRAKLMPESALTAPKEKKLSGRQYFESGRHI 454
           HG  VT+E+F++W+ +F+AEL   + K M E       + KLSG+Q FE+  ++
Sbjct: 142 HGTPVTIENFLSWKAKFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFETDHNL 193



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>RWDD1_HUMAN (Q9H446) RWD domain-containing protein 1|
          Length = 243

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 21/54 (38%), Positives = 33/54 (61%)
 Frame = -1

Query: 615 HGEAVTVESFMAWRERFEAELALQRAKLMPESALTAPKEKKLSGRQYFESGRHI 454
           HG  VT+E+F+ W+ +F+AEL   + K M E       + KLSG+Q FE+  ++
Sbjct: 142 HGTPVTIENFLNWKAKFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFETDHNL 193



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>GIR2_YEAST (Q03768) Protein GIR2|
          Length = 265

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 615 HGEAVTVESFMAWRERFEAELAL-QRAKLMPESALTAPKEKKLSGRQYFESG 463
           HG  VT ES++ WR +F  EL L +R ++    A       KL+G+Q FE G
Sbjct: 187 HGTKVTRESYLEWRSKFRQELKLDERDQVRRMKA----HHGKLTGKQMFEQG 234


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,105,260
Number of Sequences: 219361
Number of extensions: 1548192
Number of successful extensions: 3974
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3974
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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