ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5m04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SIG10_HUMAN (Q96LC7) Sialic acid-binding Ig-like lectin 10 precu... 31 1.6
2HIW_DROME (Q9NB71) Ubiquitin ligase protein highwire (EC 6.3.2.-... 30 2.7
3PLSX_BLOFL (Q7VR17) Fatty acid/phospholipid synthesis protein plsX 30 4.7
4MLO2_SCHPO (Q09329) Protein mlo2 30 4.7
5CF170_HUMAN (Q96NH3) Protein C6orf170 29 6.1
6IE68_EHV4 (P18346) Immediate-early protein IE68 (ORF4) (Fragment) 29 6.1
7ANFK_CLOHU (Q46084) Nitrogenase iron-iron protein beta chain (EC... 29 7.9

>SIG10_HUMAN (Q96LC7) Sialic acid-binding Ig-like lectin 10 precursor|
           (Siglec-10) (Siglec-like protein 2)
          Length = 697

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 448 AQAHHLEAASQTTRWAPVAAGRRPYQVVRGRGGRFSTCGPVSECGRCFLVL 296
           A  +  +A ++TT+ APVA   +  +V     GRF   G  ++ G C LV+
Sbjct: 56  AYGYWFKAVTETTKGAPVATNHQSREVEMSTRGRFQLTGDPAK-GNCSLVI 105



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>HIW_DROME (Q9NB71) Ubiquitin ligase protein highwire (EC 6.3.2.-) (Protein|
            pam/highwire/rpm-1)
          Length = 5233

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 177  CNIAFHSTLHIHPQLACNRYHSG--KHEGKTGTGRTTVIPGIKTKKHLPHSLTGPH 338
            C+++F+ T     QL C  Y+S   K +G + +GRT     + T       L GPH
Sbjct: 2148 CDLSFNGTTPARGQLPCILYYSTPMKQDGHSASGRTGDGSNVATHLEDRIMLLGPH 2203



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>PLSX_BLOFL (Q7VR17) Fatty acid/phospholipid synthesis protein plsX|
          Length = 344

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +2

Query: 347 PSSSPANDLIRPSSGGDGSPARSLRGSLEMMSLGHVLCCDGARLHGA 487
           PS S  ND  RP+     S   S+R +LE++  GH   C  A   GA
Sbjct: 64  PSKSVVNDNDRPAQAIRLSKNTSMRIALELIKSGHAQACVSAGNTGA 110



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>MLO2_SCHPO (Q09329) Protein mlo2|
          Length = 329

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -1

Query: 225 RLAVDECGV*NEMQCYSFRNCCASSV*YSEKTHE---LSCIMC*DMYSPHCHCLQQ 67
           R +VDECG  N+         C     Y+ +T E     CI+C D +  H  CLQ+
Sbjct: 102 RKSVDECGSENDYNHNFEGRFCICDTVYNPETEEGTMFQCILCEDWF--HEKCLQK 155



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>CF170_HUMAN (Q96NH3) Protein C6orf170|
          Length = 1247

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = -2

Query: 203 ECRMKC--NVTVSETVVHPVCSTLKKHMSLVV*CAETCILHIATVCSNV 63
           EC ++C  N  V ET++ P+ + +K + +    C+ET ++HIA + + +
Sbjct: 499 ECAVECLYNNIVIETLLQPIHNLMKGNEASPN-CSETALIHIAGILARI 546



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>IE68_EHV4 (P18346) Immediate-early protein IE68 (ORF4) (Fragment)|
          Length = 273

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 332 STRREPSSSPANDLIRPSSGGDGSPARSLR 421
           S R  PS+SP    + PSSGG+ SP  S R
Sbjct: 6   SQRGAPSTSPIIPSLSPSSGGNPSPRSSQR 35



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>ANFK_CLOHU (Q46084) Nitrogenase iron-iron protein beta chain (EC 1.18.6.1)|
           (Nitrogenase component I) (Dinitrogenase 3 beta subunit)
           (Fragment)
          Length = 329

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
 Frame = +2

Query: 191 SFYTPHSSTASLQSISLRET*GKNRHWK--NYSDP--RHQN*EASSTFTHRSTR--REPS 352
           SF +PHS+  SL S       G +RH +   + +P  RHQ    S+    RS R    P 
Sbjct: 207 SFDSPHSADGSLVSHGNTHHRGSDRHRQCPTFPEPLRRHQGRRVSAEEIRRSRRSSARPR 266

Query: 353 SSPA-NDLIRPSSGGDGSP 406
           S P    L      GDG P
Sbjct: 267 SHPQYRHLPAEPEEGDGKP 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,990,771
Number of Sequences: 219361
Number of extensions: 1496217
Number of successful extensions: 4449
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4443
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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