| Clone Name | rbags5m04 |
|---|---|
| Clone Library Name | barley_pub |
>SIG10_HUMAN (Q96LC7) Sialic acid-binding Ig-like lectin 10 precursor| (Siglec-10) (Siglec-like protein 2) Length = 697 Score = 31.2 bits (69), Expect = 1.6 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = -3 Query: 448 AQAHHLEAASQTTRWAPVAAGRRPYQVVRGRGGRFSTCGPVSECGRCFLVL 296 A + +A ++TT+ APVA + +V GRF G ++ G C LV+ Sbjct: 56 AYGYWFKAVTETTKGAPVATNHQSREVEMSTRGRFQLTGDPAK-GNCSLVI 105
>HIW_DROME (Q9NB71) Ubiquitin ligase protein highwire (EC 6.3.2.-) (Protein| pam/highwire/rpm-1) Length = 5233 Score = 30.4 bits (67), Expect = 2.7 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = +3 Query: 177 CNIAFHSTLHIHPQLACNRYHSG--KHEGKTGTGRTTVIPGIKTKKHLPHSLTGPH 338 C+++F+ T QL C Y+S K +G + +GRT + T L GPH Sbjct: 2148 CDLSFNGTTPARGQLPCILYYSTPMKQDGHSASGRTGDGSNVATHLEDRIMLLGPH 2203
>PLSX_BLOFL (Q7VR17) Fatty acid/phospholipid synthesis protein plsX| Length = 344 Score = 29.6 bits (65), Expect = 4.7 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = +2 Query: 347 PSSSPANDLIRPSSGGDGSPARSLRGSLEMMSLGHVLCCDGARLHGA 487 PS S ND RP+ S S+R +LE++ GH C A GA Sbjct: 64 PSKSVVNDNDRPAQAIRLSKNTSMRIALELIKSGHAQACVSAGNTGA 110
>MLO2_SCHPO (Q09329) Protein mlo2| Length = 329 Score = 29.6 bits (65), Expect = 4.7 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = -1 Query: 225 RLAVDECGV*NEMQCYSFRNCCASSV*YSEKTHE---LSCIMC*DMYSPHCHCLQQ 67 R +VDECG N+ C Y+ +T E CI+C D + H CLQ+ Sbjct: 102 RKSVDECGSENDYNHNFEGRFCICDTVYNPETEEGTMFQCILCEDWF--HEKCLQK 155
>CF170_HUMAN (Q96NH3) Protein C6orf170| Length = 1247 Score = 29.3 bits (64), Expect = 6.1 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 2/49 (4%) Frame = -2 Query: 203 ECRMKC--NVTVSETVVHPVCSTLKKHMSLVV*CAETCILHIATVCSNV 63 EC ++C N V ET++ P+ + +K + + C+ET ++HIA + + + Sbjct: 499 ECAVECLYNNIVIETLLQPIHNLMKGNEASPN-CSETALIHIAGILARI 546
>IE68_EHV4 (P18346) Immediate-early protein IE68 (ORF4) (Fragment)| Length = 273 Score = 29.3 bits (64), Expect = 6.1 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +2 Query: 332 STRREPSSSPANDLIRPSSGGDGSPARSLR 421 S R PS+SP + PSSGG+ SP S R Sbjct: 6 SQRGAPSTSPIIPSLSPSSGGNPSPRSSQR 35
>ANFK_CLOHU (Q46084) Nitrogenase iron-iron protein beta chain (EC 1.18.6.1)| (Nitrogenase component I) (Dinitrogenase 3 beta subunit) (Fragment) Length = 329 Score = 28.9 bits (63), Expect = 7.9 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 7/79 (8%) Frame = +2 Query: 191 SFYTPHSSTASLQSISLRET*GKNRHWK--NYSDP--RHQN*EASSTFTHRSTR--REPS 352 SF +PHS+ SL S G +RH + + +P RHQ S+ RS R P Sbjct: 207 SFDSPHSADGSLVSHGNTHHRGSDRHRQCPTFPEPLRRHQGRRVSAEEIRRSRRSSARPR 266 Query: 353 SSPA-NDLIRPSSGGDGSP 406 S P L GDG P Sbjct: 267 SHPQYRHLPAEPEEGDGKP 285 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,990,771 Number of Sequences: 219361 Number of extensions: 1496217 Number of successful extensions: 4449 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 4229 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4443 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)