ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5m02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M19048.1|BLYTHNC Barley leaf specific thionin mRNA, complete cds, clone pKG1940 Length = 663 Score = 603 bits (304), Expect = e-169 Identities = 396/424 (93%), Gaps = 2/424 (0%) Strand = Plus / Minus Query: 7 ctcttattggaacaagggtaaaa-cagaaatacataactaagatgatacatttgcttcga 65 ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||| Sbjct: 597 ctcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcga 538 Query: 66 taccgctgatggtatcgagataattcaagacaaaatgacaatacgaacttggtcatataa 125 | | | |||||||||| |||| || || | |||||||||| |||| ||||| |||| || Sbjct: 537 t-ctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaa 479 Query: 126 atcatgcccaagaaggcatgattaggcttcaacagactgaatgaccgcaccatcattaca 185 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 478 atcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattaca 419 Query: 186 gaaacggacacatgtgttgctgcagagtcccatgttgaatttcatctcttggccacgaaa 245 ||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | Sbjct: 418 gaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggga 359 Query: 246 aacattgtccatgttgtcacaaacggaagtcatgcatccaattgtgcagtactcagtcgc 305 ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct: 358 aacattgtccatgttgtcacagacggaagtccggcatccaattgtgcagtactcagtcgc 299 Query: 306 atttggttcaccgtattcagggagaagattcagcttaggatagtccctaggacatgttgg 365 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 atttggttcaccggattcagggagaagattcagcttaggatagtccctaggacatgttgg 239 Query: 366 gccgcttatgattttacaaccacaagcagttgcgcagactggtcgggaaccaccggcgaa 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 238 gccgcttatgattttacaaccacaagcagttgcgcagactggtcgggaaccaccagcgaa 179 Query: 426 acgg 429 |||| Sbjct: 178 acgg 175
>gb|M19047.1|BLYTHNB Barley leaf specific thionin mRNA, complete cds, clone pKG1348 Length = 608 Score = 603 bits (304), Expect = e-169 Identities = 396/424 (93%), Gaps = 2/424 (0%) Strand = Plus / Minus Query: 7 ctcttattggaacaagggtaaaa-cagaaatacataactaagatgatacatttgcttcga 65 ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||| Sbjct: 597 ctcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcga 538 Query: 66 taccgctgatggtatcgagataattcaagacaaaatgacaatacgaacttggtcatataa 125 | | | |||||||||| |||| || || | |||||||||| |||| ||||| |||| || Sbjct: 537 t-ctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaa 479 Query: 126 atcatgcccaagaaggcatgattaggcttcaacagactgaatgaccgcaccatcattaca 185 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 478 atcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattaca 419 Query: 186 gaaacggacacatgtgttgctgcagagtcccatgttgaatttcatctcttggccacgaaa 245 ||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | Sbjct: 418 gaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggga 359 Query: 246 aacattgtccatgttgtcacaaacggaagtcatgcatccaattgtgcagtactcagtcgc 305 ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct: 358 aacattgtccatgttgtcacagacggaagtccggcatccaattgtgcagtactcagtcgc 299 Query: 306 atttggttcaccgtattcagggagaagattcagcttaggatagtccctaggacatgttgg 365 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 atttggttcaccggattcagggagaagattcagcttaggatagtccctaggacatgttgg 239 Query: 366 gccgcttatgattttacaaccacaagcagttgcgcagactggtcgggaaccaccggcgaa 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 238 gccgcttatgattttacaaccacaagcagttgcgcagactggtcgggaaccaccagcgaa 179 Query: 426 acgg 429 |||| Sbjct: 178 acgg 175
>emb|X05590.1|HVTHIOR5 Barley mRNA for leaf-specific thionin (clone DD3) Length = 491 Score = 599 bits (302), Expect = e-168 Identities = 397/426 (93%), Gaps = 2/426 (0%) Strand = Plus / Minus Query: 5 gactcttattggaacaagggtaaaa-cagaaatacataactaagatgatacatttgcttc 63 ||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||| Sbjct: 440 gactcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttc 381 Query: 64 gataccgctgatggtatcgagataattcaagacaaaatgacaatacgaacttggtcatat 123 ||| | | |||||||||| |||| || || | ||||||| || |||| ||||| |||| Sbjct: 380 gat-ctggtgatggtatcaagattgttgaacagaaaatgaaaaaacgaccttggccatag 322 Query: 124 aaatcatgcccaagaaggcatgattaggcttcaacagactgaatgaccgcaccatcatta 183 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 321 aaatcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcatta 262 Query: 184 cagaaacggacacatgtgttgctgcagagtcccatgttgaatttcatctcttggccacga 243 ||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 261 cagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgg 202 Query: 244 aaaacattgtccatgttgtcacaaacggaagtcatgcatccaattgtgcagtactcagtc 303 |||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct: 201 gaaacattgtccaggttgtcacagacggaagtcctgcatccaattgtgcagtactcagtc 142 Query: 304 gcatttggttcaccgtattcagggagaagattcagcttaggatagtccctaggacatgtt 363 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 141 gcatttggttcaccggattcagggagaagattcagcttaggatagtccctaggacaggtt 82 Query: 364 gggccgcttatgattttacaaccacaagcagttgcgcagactggtcgggaaccaccggcg 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81 gggccgcttatgattttacaaccacaagcagttgcgcagactggtcgggaaccaccggcg 22 Query: 424 aaacgg 429 |||||| Sbjct: 21 aaacgg 16
>emb|X05589.1|HVTHIOR4 Barley mRNA for leaf-specific thionin (clone DG3) Length = 544 Score = 599 bits (302), Expect = e-168 Identities = 397/426 (93%), Gaps = 2/426 (0%) Strand = Plus / Minus Query: 5 gactcttattggaacaagggtaaaa-cagaaatacataactaagatgatacatttgcttc 63 ||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||| Sbjct: 526 gactcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttc 467 Query: 64 gataccgctgatggtatcgagataattcaagacaaaatgacaatacgaacttggtcatat 123 ||| | |||||||||| |||| || || | |||||||||| |||| ||||| |||| Sbjct: 466 gatgtgg-tgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatag 408 Query: 124 aaatcatgcccaagaaggcatgattaggcttcaacagactgaatgaccgcaccatcatta 183 |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 407 aaatcatgcccaagaaggcatgattaggcttcaagagactgaatgacttcaccatcatta 348 Query: 184 cagaaacggacacatgtgttgctgcagagtcccatgttgaatttcatctcttggccacga 243 ||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 347 cagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgg 288 Query: 244 aaaacattgtccatgttgtcacaaacggaagtcatgcatccaattgtgcagtactcagtc 303 |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct: 287 gaaacattgtccatgttgtcacagacggaagtcctgcatccaattgtgcagtactcagtc 228 Query: 304 gcatttggttcaccgtattcagggagaagattcagcttaggatagtccctaggacatgtt 363 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 227 gcatttggttcaccggattcagggagaagattcagcttaggatagtccctaggacatgtt 168 Query: 364 gggccgcttatgattttacaaccacaagcagttgcgcagactggtcgggaaccaccggcg 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 167 gggccgcttatgattttacaaccacaagcagttgcgcagactggtcgggaaccaccagcg 108 Query: 424 aaacgg 429 |||||| Sbjct: 107 aaacgg 102
>gb|M19046.1|BLYTHNA Barley leaf specific thionin mRNA, complete cds, clone pKG2872 Length = 540 Score = 535 bits (270), Expect = e-149 Identities = 336/358 (93%) Strand = Plus / Minus Query: 72 tgatggtatcgagataattcaagacaaaatgacaatacgaacttggtcatataaatcatg 131 |||||||||| |||| || || | |||||||||| |||| ||||| |||| |||||||| Sbjct: 532 tgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatg 473 Query: 132 cccaagaaggcatgattaggcttcaacagactgaatgaccgcaccatcattacagaaacg 191 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 472 cccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacg 413 Query: 192 gacacatgtgttgctgcagagtcccatgttgaatttcatctcttggccacgaaaaacatt 251 | |||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct: 412 ggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaaacatt 353 Query: 252 gtccatgttgtcacaaacggaagtcatgcatccaattgtgcagtactcagtcgcatttgg 311 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 352 gtccatgttgtcacagacggaagtccggcatccaattgtgcagtactcagtcgcatttgg 293 Query: 312 ttcaccgtattcagggagaagattcagcttaggatagtccctaggacatgttgggccgct 371 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 292 ttcaccggattcagggagaagattcagcttaggatagtccctaggacatgttgggccgct 233 Query: 372 tatgattttacaaccacaagcagttgcgcagactggtcgggaaccaccggcgaaacgg 429 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 232 tatgattttacaaccacaagcagttgcgcagactggtcgggaaccaccagcgaaacgg 175
>emb|X05587.1|HVTHIOR2 Barley mRNA for leaf-specific thionin (clone DC4) Length = 658 Score = 525 bits (265), Expect = e-146 Identities = 382/421 (90%) Strand = Plus / Minus Query: 9 cttattggaacaagggtaaaacagaaatacataactaagatgatacatttgcttcgatac 68 |||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||| Sbjct: 577 cttattggaacaagggaaaaacagaaatgcataagtaagatgatacatttccttcgatac 518 Query: 69 cgctgatggtatcgagataattcaagacaaaatgacaatacgaacttggtcatataaatc 128 |||||||||||| |||| |||||||||||||||||||||||| ||||| |||| ||||| Sbjct: 517 agctgatggtatcaagattattcaagacaaaatgacaatacgaccttggccatagaaatc 458 Query: 129 atgcccaagaaggcatgattaggcttcaacagactgaatgaccgcaccatcattacagaa 188 |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 457 atgcacaagaaggcatgattaggcttcaacagactgaatgactgcaccatcattacaaaa 398 Query: 189 acggacacatgtgttgctgcagagtcccatgttgaatttcatctcttggccacgaaaaac 248 |||| |||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct: 397 acgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggaaaac 338 Query: 249 attgtccatgttgtcacaaacggaagtcatgcatccaattgtgcagtactcagtcgcatt 308 |||||||||||||||||| || ||| || |||||||||| |||||||||| ||| ||| Sbjct: 337 attgtccatgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacatc 278 Query: 309 tggttcaccgtattcagggagaagattcagcttaggatagtccctaggacatgttgggcc 368 |||||||||| |||||||||||||||| || ||||||||||| ||||| ||| |||| || Sbjct: 277 tggttcaccggattcagggagaagattaagtttaggatagtcactagggcattttggacc 218 Query: 369 gcttatgattttacaaccacaagcagttgcgcagactggtcgggaaccaccggcgaaacg 428 |||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||||| Sbjct: 217 acttatgattttacaacgacaagcacctgcgcagactggacgggaaccacccgcgaaacg 158 Query: 429 g 429 | Sbjct: 157 g 157
>emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clone DB4) Length = 637 Score = 511 bits (258), Expect = e-142 Identities = 381/422 (90%) Strand = Plus / Minus Query: 5 gactcttattggaacaagggtaaaacagaaatacataactaagatgatacatttgcttcg 64 |||||||||||||||||||| |||| | |||||||||| |||||||||||||| ||||| Sbjct: 574 gactcttattggaacaagggaaaaagacaaatacataagtaagatgatacattggcttcc 515 Query: 65 ataccgctgatggtatcgagataattcaagacaaaatgacaatacgaacttggtcatata 124 |||| |||||||||||| |||| |||||||||||||||||||||||| | ||| |||| | Sbjct: 514 atacagctgatggtatcaagattattcaagacaaaatgacaatacgaccatggccataga 455 Query: 125 aatcatgcccaagaaggcatgattaggcttcaacagactgaatgaccgcaccatcattac 184 |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 454 aatcatgcacaagaaggcatgattaggcttcaacagactgaatgactgcaccatcattac 395 Query: 185 agaaacggacacatgtgttgctgcagagtcccatgttgaatttcatctcttggccacgaa 244 |||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | Sbjct: 394 agaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgga 335 Query: 245 aaacattgtccatgttgtcacaaacggaagtcatgcatccaattgtgcagtactcagtcg 304 |||||||||||||||||||||| || ||| || |||||||||| |||||||||| || Sbjct: 334 aaacattgtccatgttgtcacagacagaattcctgcatccaatggtgcagtactgcgtga 275 Query: 305 catttggttcaccgtattcagggagaagattcagcttaggatagtccctaggacatgttg 364 ||| |||||||||| ||||||||||||||||||| ||||||||||| ||||| ||| ||| Sbjct: 274 catctggttcaccggattcagggagaagattcagtttaggatagtcactagggcattttg 215 Query: 365 ggccgcttatgattttacaaccacaagcagttgcgcagactggtcgggaaccaccggcga 424 | || |||||||||||||||| ||||||| |||||||||||| ||||||||||| |||| Sbjct: 214 gaccacttatgattttacaacgacaagcacctgcgcagactggacgggaaccacccgcga 155 Query: 425 aa 426 || Sbjct: 154 aa 153
>emb|AJ508712.1|HVU508712 Hordeum vulgare mRNA for putative thionin Length = 414 Score = 476 bits (240), Expect = e-131 Identities = 270/280 (96%) Strand = Plus / Minus Query: 147 ttaggcttcaacagactgaatgaccgcaccatcattacagaaacggacacatgtgttgct 206 |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| Sbjct: 414 ttaggcttcaacagactgaatgacatcaccatcattacagaaacgggcacatgcgttgct 355 Query: 207 gcagagtcccatgttgaatttcatctcttggccacgaaaaacattgtccatgttgtcaca 266 |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 354 gcagagtcccatgtcgaatttcatctcttggccacgggaaacattgtccatgttgtcaca 295 Query: 267 aacggaagtcatgcatccaattgtgcagtactcagtcgcatttggttcaccgtattcagg 326 ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 294 gacggaagtcctgcatccaattgtgcagtactcagtcgcatttggttcaccggattcagg 235 Query: 327 gagaagattcagcttaggatagtccctaggacatgttgggccgcttatgattttacaacc 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 234 gagaagattcagcttaggatagtccctaggacatgttgggccgcttatgattttacaacc 175 Query: 387 acaagcagttgcgcagactggtcgggaaccaccggcgaaa 426 |||||||||||||||||||||||||||||||||||||||| Sbjct: 174 acaagcagttgcgcagactggtcgggaaccaccggcgaaa 135
>emb|X05588.1|HVTHIOR3 Barley mRNA for leaf-specific thionin (clone DF2) Length = 453 Score = 470 bits (237), Expect = e-129 Identities = 357/397 (89%) Strand = Plus / Minus Query: 9 cttattggaacaagggtaaaacagaaatacataactaagatgatacatttgcttcgatac 68 |||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||| Sbjct: 397 cttattggaacaagggaaaaacagaaatgcataagtaagatgatacatttccttcgatac 338 Query: 69 cgctgatggtatcgagataattcaagacaaaatgacaatacgaacttggtcatataaatc 128 |||||||||||| |||| |||||||||||||||||||||||| ||||| |||| ||||| Sbjct: 337 agctgatggtatcaagattattcaagacaaaatgacaatacgaccttggccatagaaatc 278 Query: 129 atgcccaagaaggcatgattaggcttcaacagactgaatgaccgcaccatcattacagaa 188 |||| |||||||||||||||||| |||||||||||||||||| |||||||||||||| || Sbjct: 277 atgcacaagaaggcatgattaggattcaacagactgaatgactgcaccatcattacaaaa 218 Query: 189 acggacacatgtgttgctgcagagtcccatgttgaatttcatctcttggccacgaaaaac 248 |||| |||||| |||||||||||||||||||| ||||||||||||||||||| | ||||| Sbjct: 217 acgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccatggaaaac 158 Query: 249 attgtccatgttgtcacaaacggaagtcatgcatccaattgtgcagtactcagtcgcatt 308 |||||||||||||||||| || ||| || |||||||||| |||||||||| ||| ||| Sbjct: 157 attgtccatgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacatc 98 Query: 309 tggttcaccgtattcagggagaagattcagcttaggatagtccctaggacatgttgggcc 368 ||||||||| |||||||||||||||| || ||||||||||| ||||| ||| |||| || Sbjct: 97 gggttcaccggattcagggagaagattaagtttaggatagtcactagggcattttggacc 38 Query: 369 gcttatgattttacaaccacaagcagttgcgcagact 405 |||||||||||||||| ||||||| |||||||||| Sbjct: 37 acttatgattttacaacgacaagcacctgcgcagact 1
>gb|L36882.1|BLYBTH6T Hordeum vulgare thionin (bth6) gene, complete cds Length = 2406 Score = 333 bits (168), Expect = 3e-88 Identities = 225/244 (92%) Strand = Plus / Minus Query: 5 gactcttattggaacaagggtaaaacagaaatacataactaagatgatacatttgcttcg 64 ||||||| |||||||||||| |||| | |||||||||| |||||||||||||| ||||| Sbjct: 2274 gactcttgttggaacaagggaaaaagacaaatacataagtaagatgatacattggcttcc 2215 Query: 65 ataccgctgatggtatcgagataattcaagacaaaatgacaatacgaacttggtcatata 124 |||| |||||||||||| |||| |||||||||||||||||||||||| ||||| |||| | Sbjct: 2214 atacagctgatggtatcaagattattcaagacaaaatgacaatacgaccttggccataga 2155 Query: 125 aatcatgcccaagaaggcatgattaggcttcaacagactgaatgaccgcaccatcattac 184 |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 2154 aatcatgcacaagaaggcatgattaggcttcaacagactgaatgactgcaccatcattac 2095 Query: 185 agaaacggacacatgtgttgctgcagagtcccatgttgaatttcatctcttggccacgaa 244 |||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | Sbjct: 2094 agaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgga 2035 Query: 245 aaac 248 |||| Sbjct: 2034 aaac 2031 Score = 133 bits (67), Expect = 5e-28 Identities = 103/115 (89%) Strand = Plus / Minus Query: 315 accgtattcagggagaagattcagcttaggatagtccctaggacatgttgggccgcttat 374 |||| ||||||||||||||||||| ||||||||||| ||||| ||| |||| || ||||| Sbjct: 1776 accggattcagggagaagattcagtttaggatagtcactagggcattttggaccacttat 1717 Query: 375 gattttacaaccacaagcagttgcgcagactggtcgggaaccaccggcgaaacgg 429 ||||||||||| ||||||| |||||||||||| ||||||||||| ||||||||| Sbjct: 1716 gattttacaacgacaagcacctgcgcagactggacgggaaccacccgcgaaacgg 1662 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 248 cattgtccatgttgtcacaaacggaagtcatgcatccaattgtgcagtactcagtcgcat 307 ||||||||||||||||||| || ||| || |||||||||| |||||||||| ||| ||| Sbjct: 1937 cattgtccatgttgtcacagacagaattcgtgcatccaatggtgcagtactgagtgacat 1878 Query: 308 ttggttcacc 317 ||||||||| Sbjct: 1877 ctggttcacc 1868
>gb|L36883.1|BLYBTH7T Hordeum vulgare thionin (BTH7) gene, complete cds Length = 2259 Score = 212 bits (107), Expect = 7e-52 Identities = 155/171 (90%) Strand = Plus / Minus Query: 72 tgatggtatcgagataattcaagacaaaatgacaatacgaacttggtcatataaatcatg 131 |||||||||| |||| || || | |||||||||| |||| ||||| |||| |||||||| Sbjct: 2230 tgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatg 2171 Query: 132 cccaagaaggcatgattaggcttcaacagactgaatgaccgcaccatcattacagaaacg 191 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2170 cccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacg 2111 Query: 192 gacacatgtgttgctgcagagtcccatgttgaatttcatctcttggccacg 242 | |||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 2110 ggcacatgcgttgctgcagagtcccatgtcaaatttcatctcttggccacg 2060 Score = 212 bits (107), Expect = 7e-52 Identities = 113/115 (98%) Strand = Plus / Minus Query: 315 accgtattcagggagaagattcagcttaggatagtccctaggacatgttgggccgcttat 374 |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1797 accggattcagggagaagattcagcttaggatagtccctaggacaggttgggccgcttat 1738 Query: 375 gattttacaaccacaagcagttgcgcagactggtcgggaaccaccggcgaaacgg 429 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1737 gattttacaaccacaagcagttgcgcagactggtcgggaaccaccggcgaaacgg 1683 Score = 123 bits (62), Expect = 5e-25 Identities = 68/70 (97%) Strand = Plus / Minus Query: 248 cattgtccatgttgtcacaaacggaagtcatgcatccaattgtgcagtactcagtcgcat 307 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct: 1963 cattgtccatgttgtcacaaacggaagtcctgcatccaattgtgcagtactcagtcacat 1904 Query: 308 ttggttcacc 317 |||||||||| Sbjct: 1903 ttggttcacc 1894
>dbj|AB072342.1| Avena sativa mRNA for thionin Asthi5, complete cds Length = 641 Score = 161 bits (81), Expect = 2e-36 Identities = 189/225 (84%) Strand = Plus / Minus Query: 124 aaatcatgcccaagaaggcatgattaggcttcaacagactgaatgaccgcaccatcatta 183 ||||||||| ||||| ||||||||| |||| | ||| ||||||| ||||| | ||| Sbjct: 482 aaatcatgcacaagagtgcatgattaagcttggaaagatggaatgacggcacccttgtta 423 Query: 184 cagaaacggacacatgtgttgctgcagagtcccatgttgaatttcatctcttggccacga 243 |||||||| |||||| ||| |||||||| ||||| || |||||||||||||||| || Sbjct: 422 cagaaacgaacacattctttgttgcagagtagcatgtcgattttcatctcttggccatga 363 Query: 244 aaaacattgtccatgttgtcacaaacggaagtcatgcatccaattgtgcagtactcagtc 303 | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 362 ataacattgtccatgttgtcacaaacggaagtcatgcatcctatggtgcagtactcagtg 303 Query: 304 gcatttggttcaccgtattcagggagaagattcagcttaggatag 348 ||| ||||||||| ||||| | ||||||| ||| |||| |||| Sbjct: 302 acatccggttcaccggattcaagtagaagatgcagtttagaatag 258
>dbj|AB072341.1| Avena sativa mRNA for thionin Asthi4, complete cds Length = 678 Score = 109 bits (55), Expect = 7e-21 Identities = 73/79 (92%) Strand = Plus / Minus Query: 256 atgttgtcacaaacggaagtcatgcatccaattgtgcagtactcagtcgcatttggttca 315 |||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||| Sbjct: 386 atgttgtcacaaacggaagtcatgcatccaatagtgcagtactcagctgcatctgcttca 327 Query: 316 ccgtattcagggagaagat 334 |||||||||| |||||||| Sbjct: 326 ccgtattcagagagaagat 308 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 181 ttacagaaacggacacatgtgttgctgcagagtcccatgttgaatttcatctcttggcca 240 ||||||||||||||||||| |||| |||||| | ||||| || ||||||||||||||| Sbjct: 476 ttacagaaacggacacatgcgttgttgcagacttgcatgtcgatgttcatctcttggcca 417 Query: 241 cgaa 244 |||| Sbjct: 416 cgaa 413
>gb|AC009229.5| Homo sapiens BAC clone RP11-314C9 from 2, complete sequence Length = 209156 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 250 ttgtccatgttgtcacaaacggaag 274 ||||||||||||||||||| ||||| Sbjct: 87238 ttgtccatgttgtcacaaatggaag 87262
>gb|AY458630.1| Uncultured bacterium 106 clone EBAC750-01B07 genomic sequence Length = 43887 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gttgtcacaaacggaagtca 277 |||||||||||||||||||| Sbjct: 41207 gttgtcacaaacggaagtca 41226
>emb|CR931735.1| Medicago truncatula chromosome 5 clone mth2-37f4, COMPLETE SEQUENCE Length = 114414 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 aaatacataactaagatgat 52 |||||||||||||||||||| Sbjct: 70952 aaatacataactaagatgat 70971
>gb|AC146572.11| Medicago truncatula clone mth2-104c10, complete sequence Length = 109548 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 aaatacataactaagatgat 52 |||||||||||||||||||| Sbjct: 645 aaatacataactaagatgat 664
>gb|AC022395.4| Homo sapiens chromosome 10 clone RP11-354M20, complete sequence Length = 193669 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aactaagatgatacatttgc 60 |||||||||||||||||||| Sbjct: 96493 aactaagatgatacatttgc 96512
>emb|BX324225.7| Zebrafish DNA sequence from clone DKEY-180I22 in linkage group 21, complete sequence Length = 207125 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 gtgttgctgcagagtcccat 218 |||||||||||||||||||| Sbjct: 18741 gtgttgctgcagagtcccat 18760
>gb|AC155907.2| Mus musculus BAC clone RP23-250B18 from chromosome 9, complete sequence Length = 183619 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ggtaaaacagaaatacataa 42 |||||||||||||||||||| Sbjct: 112945 ggtaaaacagaaatacataa 112926
>gb|AC084654.1|CBRG45O23 Caenorhabditis briggsae cosmid G45O23, complete sequence Length = 34686 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 acagaaatacataactaaga 48 |||||||||||||||||||| Sbjct: 19747 acagaaatacataactaaga 19766
>dbj|BS000023.1| Pan troglodytes chromosome 22 clone:PTB-018G23, map 22, complete sequences Length = 135513 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 ttgtccatgttgtcacaaac 269 |||||||||||||||||||| Sbjct: 53181 ttgtccatgttgtcacaaac 53200
>gb|AC005879.3|AC005879 citb_287_c_20, complete sequence Length = 190982 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aactaagatgatacatttgc 60 |||||||||||||||||||| Sbjct: 32396 aactaagatgatacatttgc 32377 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,431,224 Number of Sequences: 3902068 Number of extensions: 3431224 Number of successful extensions: 63136 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63093 Number of HSP's gapped (non-prelim): 35 length of query: 429 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 407 effective length of database: 17,147,199,772 effective search space: 6978910307204 effective search space used: 6978910307204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
