ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6b01 |
|---|---|
| Clone Library Name | barley_pub |
>RL19C_ARATH (P49693) 60S ribosomal protein L19-3| Length = 208 Score = 105 bits (263), Expect = 7e-23 Identities = 53/78 (67%), Positives = 57/78 (73%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFXXXXXXXX 350 KYRE KKID+HMYHDMY+KVKGN+FKNKRVLMESIHKSKAEKAREKTLSDQF Sbjct: 108 KYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNK 167 Query: 349 XXXXXXXXXXXXRLAQGP 296 RLA+GP Sbjct: 168 ASRERKHARREERLAKGP 185
>RL19A_ARATH (Q9SRX2) 60S ribosomal protein L19-1| Length = 214 Score = 105 bits (263), Expect = 7e-23 Identities = 53/78 (67%), Positives = 57/78 (73%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFXXXXXXXX 350 KYRE KKIDKHMYHDMY++VKGN+FKNKRVLMESIHKSKAEKAREKTLSDQF Sbjct: 108 KYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNK 167 Query: 349 XXXXXXXXXXXXRLAQGP 296 RLA+GP Sbjct: 168 ASRERKHARREERLAKGP 185
>RL19B_ARATH (Q9LUQ6) 60S ribosomal protein L19-2| Length = 209 Score = 104 bits (259), Expect = 2e-22 Identities = 52/78 (66%), Positives = 57/78 (73%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFXXXXXXXX 350 KYRE+KKID+HMYHDMY+KVKGN+FKNKRVLMESIHK KAEKAREKTL+DQF Sbjct: 108 KYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNK 167 Query: 349 XXXXXXXXXXXXRLAQGP 296 RLAQGP Sbjct: 168 ASRERKFARREERLAQGP 185
>RL19_RAT (P84100) 60S ribosomal protein L19| Length = 196 Score = 87.0 bits (214), Expect = 3e-17 Identities = 38/51 (74%), Positives = 47/51 (92%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 377 +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 108 RYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_PONPY (Q5RB99) 60S ribosomal protein L19| Length = 196 Score = 87.0 bits (214), Expect = 3e-17 Identities = 38/51 (74%), Positives = 47/51 (92%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 377 +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 108 RYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_MOUSE (P84099) 60S ribosomal protein L19| Length = 196 Score = 87.0 bits (214), Expect = 3e-17 Identities = 38/51 (74%), Positives = 47/51 (92%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 377 +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 108 RYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_MACFA (Q8HXN9) 60S ribosomal protein L19| Length = 196 Score = 87.0 bits (214), Expect = 3e-17 Identities = 38/51 (74%), Positives = 47/51 (92%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 377 +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 108 RYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_HUMAN (P84098) 60S ribosomal protein L19| Length = 196 Score = 87.0 bits (214), Expect = 3e-17 Identities = 38/51 (74%), Positives = 47/51 (92%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 377 +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 108 RYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_BOVIN (Q3T0W9) 60S ribosomal protein L19| Length = 196 Score = 87.0 bits (214), Expect = 3e-17 Identities = 38/51 (74%), Positives = 47/51 (92%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 377 +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 108 RYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_XENLA (Q7ZYS1) 60S ribosomal protein L19| Length = 197 Score = 87.0 bits (214), Expect = 3e-17 Identities = 38/51 (74%), Positives = 47/51 (92%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 377 +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 108 RYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_BRARE (Q6P5L3) 60S ribosomal protein L19| Length = 196 Score = 85.5 bits (210), Expect = 1e-16 Identities = 37/51 (72%), Positives = 46/51 (90%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 377 +YREAKKID+HMYH +YL+ KGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 108 RYREAKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_DROME (P36241) 60S ribosomal protein L19| Length = 203 Score = 85.1 bits (209), Expect = 1e-16 Identities = 37/51 (72%), Positives = 45/51 (88%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 377 KYR++KKID+H+YHD+Y+K KGN+FKNKRVLME IHK KAEK R K L+DQ Sbjct: 108 KYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQ 158
>RL19_ICTPU (Q90YU8) 60S ribosomal protein L19| Length = 196 Score = 84.3 bits (207), Expect = 2e-16 Identities = 36/51 (70%), Positives = 46/51 (90%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 377 +YRE+KKID+HMYH +YL+ KGN+FKNKR+LME IHK KA++AR+K LSDQ Sbjct: 108 RYRESKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQ 158
>RL19_DICDI (P14329) 60S ribosomal protein L19 (Vegetative-specific protein| V14) (22 kDa calmodulin-binding protein) Length = 186 Score = 77.4 bits (189), Expect = 3e-14 Identities = 36/51 (70%), Positives = 41/51 (80%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 377 KYREAKKIDKH Y ++YLK KGN+FKNKR L+E I KSK EK REK + DQ Sbjct: 108 KYREAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQ 158
>RL19_CAEEL (O02639) 60S ribosomal protein L19| Length = 198 Score = 70.1 bits (170), Expect = 4e-12 Identities = 30/51 (58%), Positives = 40/51 (78%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 377 +YR+AKK+DKH+YH++YL+ KGN FKNK+ L+E I K K E R K L+DQ Sbjct: 108 RYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158
>RL19_SCHPO (P05734) 60S ribosomal protein L19 (YL15)| Length = 192 Score = 66.6 bits (161), Expect = 5e-11 Identities = 29/51 (56%), Positives = 39/51 (76%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 377 KYRE+ KIDKH+YH +YL+ KGN FK+KR L+E I ++KAE R K + +Q Sbjct: 107 KYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 157
>RL19_YEAST (P05735) 60S ribosomal protein L19 (L23) (YL14) (RP33) (RP15L)| Length = 188 Score = 63.2 bits (152), Expect = 5e-10 Identities = 28/51 (54%), Positives = 40/51 (78%) Frame = -1 Query: 529 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 377 KYR+A KIDKH+YH +Y + KGN FK+KR L+E I ++KA+ REK L+++ Sbjct: 107 KYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEE 157
>RL19_PYRHO (O59437) 50S ribosomal protein L19e| Length = 150 Score = 36.6 bits (83), Expect = 0.051 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = -1 Query: 568 WXXXXXXXXXXXRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVL 437 W RK +E KKID+ Y +Y++ KG FKNK L Sbjct: 95 WIKTIRALRRELRKLKEQKKIDRKTYRMLYIRAKGGQFKNKHQL 138
>RL19_PYRAB (Q9V1V3) 50S ribosomal protein L19e| Length = 151 Score = 35.8 bits (81), Expect = 0.087 Identities = 18/57 (31%), Positives = 26/57 (45%) Frame = -1 Query: 568 WXXXXXXXXXXXRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAR 398 W RK +E KKID+ Y +Y++ KG FK+K L + + K R Sbjct: 95 WIKTIRALRKELRKLKEQKKIDRRTYRMLYIRAKGGQFKSKHQLYMFLEEHNLLKKR 151
>RL19_PYRFU (Q8U016) 50S ribosomal protein L19e (PfeL19)| Length = 150 Score = 34.3 bits (77), Expect = 0.25 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = -1 Query: 568 WXXXXXXXXXXXRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVL 437 W RK + KKID+ Y +Y++ KG FKNK L Sbjct: 95 WIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQL 138
>RL19_SULSO (Q9UX89) 50S ribosomal protein L19e| Length = 151 Score = 32.0 bits (71), Expect = 1.3 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -1 Query: 523 REAKKIDKHMYHDMYLKVKGNMFK 452 R+ K ID+H Y ++YLK KG +K Sbjct: 111 RDHKVIDRHTYRELYLKTKGGNYK 134
>RL19_SULAC (O05639) 50S ribosomal protein L19e| Length = 150 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Frame = -1 Query: 523 REAKKIDKHMYHDMYLKVKGNMFKN----KRVLMESIHK 419 R+ IDKH Y +Y + KGN FKN K L + HK Sbjct: 111 RDNNVIDKHTYRLLYKRAKGNYFKNLSDVKSYLRQMGHK 149
>NU1M_RAT (P03889) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%) Frame = +3 Query: 396 SLAFSALDLWILS---------MRTLLFLNMLPLTFRYMSWYMCLSIFFA 518 +L S LWI + + LL+ N LPLT + WY+ L IF A Sbjct: 263 TLLLSTTFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCMWYISLPIFLA 312
>POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = -2 Query: 360 PRARQAGRGRLPGGRRDWPRAP 295 PR R+ RGR G RRDW RAP Sbjct: 59 PRRRRGNRGR--GQRRDWSRAP 78
>RR3_MESVI (Q9MUU2) Chloroplast 30S ribosomal protein S3| Length = 213 Score = 29.6 bits (65), Expect = 6.2 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 11/47 (23%) Frame = -2 Query: 408 RRQERRPYLTSLRPSVPRARQAG--------RGRLPG---GRRDWPR 301 R QER+P+ ++R +V RA++AG GRL G R +W R Sbjct: 125 RLQERKPFRRAIRQAVQRAKRAGVQGIKIQVAGRLNGAEIARSEWVR 171
>NU1M_HYLLA (Q96126) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 29.6 bits (65), Expect = 6.2 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 9/50 (18%) Frame = +3 Query: 396 SLAFSALDLWILS---------MRTLLFLNMLPLTFRYMSWYMCLSIFFA 518 +L ++L LWI + + LL+ N LPLT + WY+ LS A Sbjct: 263 TLLLTSLFLWIRTTYPRFRYDQLMYLLWKNFLPLTLTLLMWYISLSTMIA 312 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,728,280 Number of Sequences: 219361 Number of extensions: 736187 Number of successful extensions: 2152 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2150 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
