ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5l24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, comp... 38 6.7
2ref|XM_961971.1| PREDICTED: Tribolium castaneum similar to CG118... 38 6.7
3emb|AL935163.7| Zebrafish DNA sequence from clone CH211-206K20, ... 38 6.7

>gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, complete sequence
          Length = 202294

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 14    aataaaaatgttnttggatgaa 35
             |||||||||||| |||||||||
Sbjct: 56757 aataaaaatgtttttggatgaa 56736



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>ref|XM_961971.1| PREDICTED: Tribolium castaneum similar to CG11856-PA (LOC655426),
            mRNA
          Length = 8340

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 4    tggtggacggaataaaaat 22
            |||||||||||||||||||
Sbjct: 1700 tggtggacggaataaaaat 1718



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>emb|AL935163.7| Zebrafish DNA sequence from clone CH211-206K20, complete sequence
          Length = 158350

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 14     aataaaaatgttnttggatgaa 35
              |||||||||||| |||||||||
Sbjct: 121548 aataaaaatgttattggatgaa 121569


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 796,540
Number of Sequences: 3902068
Number of extensions: 796540
Number of successful extensions: 35636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35633
Number of HSP's gapped (non-prelim): 3
length of query: 141
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 120
effective length of database: 17,151,101,840
effective search space: 2058132220800
effective search space used: 2058132220800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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