>SRP54_GEOCY (Q8MZJ6) Signal recognition particle 54 kDa protein (SRP54)|
          Length = 499

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = -3

Query: 670 DTMSTGT-HTPEGTELKFQNHNPEPRVVTGNSDRRINVVNHLAKEFEDRRQVFDDDAGFL 494
           D+M+ G    P G +L  +      RV  G S   +  VN L K++ +         G  
Sbjct: 379 DSMNDGELDHPNGAKLFSKQPGRAARVARG-SGTSVREVNELLKQYSNFSATVKKMGGIK 437

Query: 493 VAVKSGQIGSNMNPDDELRKLKDRFA 416
              K G +G N+NP  ++ KL  + A
Sbjct: 438 GLFKGGDLGKNVNP-SQMAKLNQQMA 462

>CASG_MOUSE (Q02862) Gamma-casein precursor (PP22)|
          Length = 184

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = -2

Query: 380 DQGKPSEGQQP*REISEKMVGEEELQVNM-------EATRSEHFLTFCVQLHQMKRST 228
           D    S  ++   E+SEK+V  EE +VN+       + ++   F   C  LHQ ++S+
Sbjct: 50  DSASSSSSEESSEEVSEKIVQSEEQKVNLNQQKKFKQFSQESSFSQCCTPLHQQQQSS 107

>SYW_THEVO (Q978Y8) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)|
           (Tryptophan--tRNA ligase) (TrpRS)
          Length = 426

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = -3

Query: 607 PEPRVVTGNSDRRINVVNHLAKEFEDRRQVFDD--DAGFLVAVKSGQIGSNMNPDDELRK 434
           P P VV    D+  ++   L ++   R ++F+   D G  V++K G+  S M  D     
Sbjct: 194 PAPTVVPVGFDQDPHI--RLMRDLAKRMRIFNVFYDGGITVSIK-GKGDSTMPVDQAYEY 250

Query: 433 LKDRFATWKKDYKSRLKETK 374
           L  RF+   KDY+ R+ + K
Sbjct: 251 LSKRFSEVTKDYEYRVVKAK 270

>YFDF_ECOLI (P76505) Hypothetical protein yfdF|
          Length = 352

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
 Frame = -3

Query: 694 THAQYDSEDT--MSTGTHTPEGTELKFQNHNPE--PRVVTGNSDRRINVVNHLAKEFEDR 527
           T+   DS DT  ++ G    E  EL     + E    ++  N   + + +N+    F   
Sbjct: 75  TYIDIDSNDTDHITIGIDNQEPIELPANYKDKELVRTIINDNIVEKTHDINNKEMIFSAL 134

Query: 526 RQVFDDDAGFLVAVKSGQIGSNMNPDDELRKLK--DRFATWKKDYK 395
           ++++D D GF+    S ++   +   DE  K +  D F  + KD K
Sbjct: 135 KEIYDGDPGFIFDKISHKLRHTVTEFDESGKSEPTDLFTWYGKDKK 180

>RFC3_YEAST (P38629) Activator 1 40 kDa subunit (Replication factor C subunit|
           3) (Replication factor C3)
          Length = 340

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 21/88 (23%), Positives = 38/88 (43%)
 Frame = -3

Query: 682 YDSEDTMSTGTHTPEGTELKFQNHNPEPRVVTGNSDRRINVVNHLAKEFEDRRQVFDDDA 503
           Y    T  T T      E+  +N++     +  + DR I+VV +  K+F   RQ+F    
Sbjct: 52  YGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIF--SK 109

Query: 502 GFLVAVKSGQIGSNMNPDDELRKLKDRF 419
           GF + +            + LR++ +R+
Sbjct: 110 GFKLIILDEADAMTNAAQNALRRVIERY 137


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,104,983
Number of Sequences: 219361
Number of extensions: 1695998
Number of successful extensions: 4645
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4644
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)