ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5l23 |
|---|---|
| Clone Library Name | barley_pub |
>LEA1_HORVU (P14928) ABA-inducible protein PHV A1| Length = 213 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/78 (39%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Frame = -1 Query: 653 KAGEYTDATKGTAQEARDRTMATTQTAADKARET--AGTHDADRGQQGTGLFGALGNMTG 480 K GE +A K A EA+D+T T Q A DK ET A A +G+ TG ALG T Sbjct: 55 KTGETAEAAKQKAAEAKDKTAQTAQAAKDKTYETAQAAKERAAQGKDQTG--SALGEKTE 112 Query: 479 AIKEKLTVGSGTQQHDAA 426 A K+K + + AA Sbjct: 113 AAKQKAAETTEAAKQKAA 130
>LEA3_WHEAT (Q03968) Late embryogenesis abundant protein, group 3 (LEA)| (PMA2005) Length = 224 Score = 42.0 bits (97), Expect = 0.002 Identities = 27/76 (35%), Positives = 35/76 (46%) Frame = -1 Query: 653 KAGEYTDATKGTAQEARDRTMATTQTAADKARETAGTHDADRGQQGTGLFGALGNMTGAI 474 KA E +ATK A EA+D+T T Q A +K ETA + Q LG T A Sbjct: 66 KASETAEATKQKAAEAKDKTAQTAQAAKEKTYETAQSAKERAAQGKDQTASTLGEKTEAA 125 Query: 473 KEKLTVGSGTQQHDAA 426 K+K + + AA Sbjct: 126 KQKAAETTEAARQKAA 141 Score = 29.6 bits (65), Expect = 8.2 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 4/39 (10%) Frame = -1 Query: 653 KAGEYTDATKGTAQEARDRT----MATTQTAADKARETA 549 KAG+ T+ATK A E + T TT+ A KA ETA Sbjct: 33 KAGQTTEATKQKAGETTEATKQKAAETTEAAKQKASETA 71
>LEA1_CICAR (O49816) Late embryogenesis abundant protein 1 (CapLEA-1)| Length = 177 Score = 33.9 bits (76), Expect = 0.43 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = -1 Query: 635 DATKGTAQEARDRTMATTQTAADKARETAG 546 D T+ TAQ A+D+T TT+ +KA++T G Sbjct: 81 DETQQTAQAAKDKTQQTTEATKEKAQDTTG 110 Score = 31.6 bits (70), Expect = 2.2 Identities = 22/63 (34%), Positives = 30/63 (47%) Frame = -1 Query: 635 DATKGTAQEARDRTMATTQTAADKARETAGTHDADRGQQGTGLFGALGNMTGAIKEKLTV 456 + T+ TAQ A+D T T Q A DK ++T ++ Q TG G+ G K T Sbjct: 70 EKTQQTAQAAKDETQQTAQAAKDKTQQTTEA-TKEKAQDTTGRAREKGSEMGQ-STKETA 127 Query: 455 GSG 447 SG Sbjct: 128 QSG 130
>LEA76_BRANA (P13934) Late embryogenesis abundant protein 76 (LEA 76)| Length = 280 Score = 33.5 bits (75), Expect = 0.57 Identities = 22/75 (29%), Positives = 31/75 (41%) Frame = -1 Query: 653 KAGEYTDATKGTAQEARDRTMATTQTAADKARETAGTHDADRGQQGTGLFGALGNMTGAI 474 K G+ A + A+E +D+T T Q A KA+ETA Q A Sbjct: 20 KTGQAMGAMRDKAEEGKDKTSQTAQKAQQKAQETAQAAKDKTSQAAQTTQQKAQETAQAA 79 Query: 473 KEKLTVGSGTQQHDA 429 K+K + + T Q A Sbjct: 80 KDKTSQAAQTTQQKA 94 Score = 31.6 bits (70), Expect = 2.2 Identities = 21/64 (32%), Positives = 27/64 (42%) Frame = -1 Query: 620 TAQEARDRTMATTQTAADKARETAGTHDADRGQQGTGLFGALGNMTGAIKEKLTVGSGTQ 441 TAQ A+D+T QT KA+ETA Q T + KEK + + T Sbjct: 75 TAQAAKDKTSQAAQTTQQKAQETAQAAKDKTSQAAQTTQQKAHETTQSSKEKTSQAAQTA 134 Query: 440 QHDA 429 Q A Sbjct: 135 QEKA 138
>LEA2_CICAR (O49817) Late embryogenesis abundant protein 2 (CapLEA-2)| Length = 155 Score = 33.5 bits (75), Expect = 0.57 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = -1 Query: 635 DATKGTAQEARDRTMATTQTAADKARETAG 546 + T+ TAQ A+D+T TTQ +KA++T G Sbjct: 59 EKTQQTAQAAKDKTQQTTQATKEKAQDTTG 88
>LEAD8_DAUCA (P20075) Embryonic protein DC-8| Length = 555 Score = 33.1 bits (74), Expect = 0.74 Identities = 20/59 (33%), Positives = 29/59 (49%) Frame = -1 Query: 626 KGTAQEARDRTMATTQTAADKARETAGTHDADRGQQGTGLFGALGNMTGAIKEKLTVGS 450 +G EA+ R A +TA D+ GT +FGA+G++ AI KLT+ S Sbjct: 447 EGVKDEAKQRAEADRETAGDRGSAAKGT-----------IFGAMGSVKDAIVGKLTMPS 494 Score = 30.8 bits (68), Expect = 3.7 Identities = 20/76 (26%), Positives = 28/76 (36%) Frame = -1 Query: 653 KAGEYTDATKGTAQEARDRTMATTQTAADKARETAGTHDADRGQQGTGLFGALGNMTGAI 474 KAGEY D T A+EA+++ + +KA E G+ G G Sbjct: 121 KAGEYKDYTAQKAEEAKEKAAQKAEETKEKAGEYKNYTAQKAGEAKDTTLGKAGEYKDYA 180 Query: 473 KEKLTVGSGTQQHDAA 426 +K T AA Sbjct: 181 AQKAAEAKDTTAQKAA 196 Score = 30.0 bits (66), Expect = 6.3 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = -1 Query: 653 KAGEYTDATKGTAQEARDRTMATTQTAAD-KARETAGTHDA 534 K GEY D A EA+D TM T D A++TA T DA Sbjct: 233 KDGEYKDYAAQKAAEAKDATMQKTGEYKDYAAQKTAETKDA 273
>RHO_STRLI (P52157) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 707 Score = 32.0 bits (71), Expect = 1.7 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = -3 Query: 651 GRRVHRRHQGDRAGS*GQDNGDHADSRRQG-KGD-GRHPRCR*GSARNRPVRGAGQHDGR 478 GRR RR +GDR D GD D +G +GD G R R ++ +G G+ D + Sbjct: 224 GRRRDRRDRGDR------DRGDRGDRGDRGDRGDRGERGRDRRNKGDDQQNQGGGRQDRQ 277 Query: 477 DQG 469 QG Sbjct: 278 QQG 280
>LEA3_MAIZE (Q42376) Late embryogenesis abundant protein, group 3 (LEA)| Length = 221 Score = 31.6 bits (70), Expect = 2.2 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 4/83 (4%) Frame = -1 Query: 653 KAGEYTDATK----GTAQEARDRTMATTQTAADKARETAGTHDADRGQQGTGLFGALGNM 486 KAGE T+ATK T + A+ + TT+ A KA ET T G+ + Sbjct: 80 KAGETTEATKHKAGETTEAAKQKAGETTEAAKQKAGETTETTKQKAGETTEAARQKAADA 139 Query: 485 TGAIKEKLTVGSGTQQHDAAGHG 417 A K+K +G D A G Sbjct: 140 MEAAKQK-AAEAGQYAKDTAVSG 161 Score = 30.8 bits (68), Expect = 3.7 Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Frame = -1 Query: 653 KAGEYTDATKGTAQEARDRTMATTQTAADKARETAGT-HDADRG--QQGTGLFGALGNMT 483 K G+ ATK TAQ A+DR AAD A AG DA Q+ + LG T Sbjct: 22 KTGQAVGATKDTAQHAKDR-------AADAAGHAAGKGQDAKEATKQKASDTGSYLGKKT 74 Query: 482 GAIKEKLTVGSGTQQHDA 429 K K + +H A Sbjct: 75 DEAKHKAGETTEATKHKA 92
>K1M2_SHEEP (P25690) Keratin, type I microfibrillar, 47.6 kDa (Low-sulfur| keratin) Length = 403 Score = 31.2 bits (69), Expect = 2.8 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 11/35 (31%) Frame = -2 Query: 199 RARLRCDVHTYRAL-------LPCMP----STCGR 128 RARL C+++TYR L LPC P +TCG+ Sbjct: 345 RARLECEINTYRGLLDSEDCKLPCNPCATTNTCGK 379
>LEAD7_GOSHI (P13939) Late embryogenesis abundant protein D-7 (LEA D-7)| Length = 136 Score = 30.4 bits (67), Expect = 4.8 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = -1 Query: 629 TKGTAQEARDRTMATTQTAADKARETAGTHDADRGQQGTGLFGALGNMTGAIK 471 T+G A+ D+T T A KA ET T Q G + A T A+K Sbjct: 61 TRGAAETTNDKTKQTAGAARGKAEETKETSGGILQQAGEKVRNAAQGATDAVK 113
>ICEA_PANAN (P20469) Ice nucleation protein inaA| Length = 1322 Score = 30.0 bits (66), Expect = 6.3 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 5/88 (5%) Frame = -1 Query: 653 KAGEYTDATKGTAQEARDRTM----ATTQTAADKARETAGTHDADRGQQGTGLFGALGNM 486 K + T T D ++ +TQTA +++ +TAG Q+G+ L G+ Sbjct: 396 KGSDLTAGYGSTGTSGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGST 455 Query: 485 -TGAIKEKLTVGSGTQQHDAAGHGIRLG 405 T L G G+ Q G + G Sbjct: 456 GTAGDDSSLIAGYGSTQTAQKGSDLTAG 483
>K1M1_SHEEP (P02534) Keratin, type I microfibrillar 48 kDa, component 8C-1| (Low-sulfur keratin) Length = 412 Score = 29.6 bits (65), Expect = 8.2 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 11/52 (21%) Frame = -2 Query: 199 RARLRCDVHTYRAL-------LPCMP----STCGRQRQ*TLVQPTSGGPVEP 77 RARL C+++TYR L LPC P + CG+ + P P P Sbjct: 345 RARLECEINTYRGLLDSEDCKLPCNPCATTNACGK-----TITPCISSPCAP 391 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,714,580 Number of Sequences: 219361 Number of extensions: 1101269 Number of successful extensions: 3782 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3466 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3771 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
