ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6a22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF262215.1| Oryza sativa guanine nucleotide-exchange protein ... 48 0.006
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 1.5
3gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 40 1.5
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
5dbj|AK119229.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.5
6gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 40 1.5
7gb|AC118672.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 1.5
8gb|BC059252.1| Mus musculus rearranged L-myc fusion sequence, mR... 38 6.0
9gb|AC114643.9| Mus musculus chromosome 6, clone RP24-127D6, comp... 38 6.0
10ref|XM_988267.1| PREDICTED: Mus musculus rearranged L-myc fusion... 38 6.0
11ref|XM_921462.2| PREDICTED: Mus musculus rearranged L-myc fusion... 38 6.0
12ref|XM_355515.5| PREDICTED: Mus musculus rearranged L-myc fusion... 38 6.0
13ref|XM_909848.2| PREDICTED: Mus musculus rearranged L-myc fusion... 38 6.0
14ref|XM_900563.2| PREDICTED: Mus musculus rearranged L-myc fusion... 38 6.0
15ref|XM_001001437.1| PREDICTED: Mus musculus rearranged L-myc fus... 38 6.0
16gb|AC124460.5| Mus musculus BAC clone RP24-142P7 from chromosome... 38 6.0
17gb|AC133892.9| Mus musculus chromosome 1, clone RP23-279J5, comp... 38 6.0
18emb|AL512449.6| Human DNA sequence from clone RP11-286E7 on chro... 38 6.0
19gb|AC108527.6| Rattus norvegicus 9 BAC CH230-7F11 (Children's Ho... 38 6.0
20emb|AL136179.15| Human DNA sequence from clone RP3-322L4 on chro... 38 6.0
21emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4,... 38 6.0
22emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4,... 38 6.0
23emb|AL645726.22| Mouse DNA sequence from clone RP23-45M23 on chr... 38 6.0
24emb|BX001068.7| Mouse DNA sequence from clone RP23-54E4 on chrom... 38 6.0
25emb|BX537103.6| Zebrafish DNA sequence from clone CH211-194E1 in... 38 6.0
26gb|AC073548.5| Homo sapiens chromosome 19 clone RP11-43N16, comp... 38 6.0
27dbj|AK132452.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 38 6.0
28gb|AE010136.1| Pyrococcus furiosus DSM 3638, section 11 of 173 o... 38 6.0
29gb|AC068127.6| Homo sapiens BAC clone RP11-587O9 from 4, complet... 38 6.0
30dbj|AK171929.1| Mus musculus activated spleen cDNA, RIKEN full-l... 38 6.0
31dbj|AK040579.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 38 6.0
32gb|AE002098.2| Neisseria meningitidis MC58, complete genome 38 6.0
33dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
34dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
35ref|XM_233485.3| PREDICTED: Rattus norvegicus rearranged L-myc f... 38 6.0
36emb|BX005323.10| Zebrafish DNA sequence from clone DKEY-11F12 in... 38 6.0
37dbj|AP004272.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
38emb|AL606927.12| Mouse DNA sequence from clone RP23-144I6 on chr... 38 6.0
39gb|M68896.1|MUSGPOAD Mouse androgen-dependent glutathione peroxi... 38 6.0 
>gb|AF262215.1| Oryza sativa guanine nucleotide-exchange protein GEP2 (GEP2) mRNA,
            partial cds
          Length = 5678

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 37/40 (92%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 71   caaagaataacttacatgtggagggtatactatatcacag 110
            |||||||||||||||||||||| | |||||||||| ||||
Sbjct: 5440 caaagaataacttacatgtgga-gatatactatataacag 5402
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Plus

                                                       
Query: 71      caaagaataacttacatgtggagggtatactatatcacag 110
               |||| ||||||||||||||||| | |||||||||| ||||
Sbjct: 7724572 caaataataacttacatgtgga-gatatactatataacag 7724610
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 5       aataatgaacacaacgaaat 24
               ||||||||||||||||||||
Sbjct: 3631100 aataatgaacacaacgaaat 3631081
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Plus

                                                       
Query: 71      caaagaataacttacatgtggagggtatactatatcacag 110
               |||| ||||||||||||||||| | |||||||||| ||||
Sbjct: 7722407 caaataataacttacatgtgga-gatatactatataacag 7722445
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>dbj|AK119229.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A10, full
            insert sequence
          Length = 1360

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 71   caaagaataacttacatgtggagggtatactatatcacag 110
            |||| ||||||||||||||||| | |||||||||| ||||
Sbjct: 1147 caaataataacttacatgtgga-gatatactatataacag 1109
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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130,
              chromosome I, complete sequence
          Length = 4277185

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      aataatgaacacaacgaaat 24
              ||||||||||||||||||||
Sbjct: 659706 aataatgaacacaacgaaat 659725
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>gb|AC118672.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0078P24, from chromosome 3, complete sequence
          Length = 146930

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                      
Query: 71     caaagaataacttacatgtggagggtatactatatcacag 110
              |||| ||||||||||||||||| | |||||||||| ||||
Sbjct: 128222 caaataataacttacatgtgga-gatatactatataacag 128184
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>gb|BC059252.1| Mus musculus rearranged L-myc fusion sequence, mRNA (cDNA clone
           IMAGE:6405633), with apparent retained intron
          Length = 4649

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 56  actggaagtctggaacaaa 74
           |||||||||||||||||||
Sbjct: 289 actggaagtctggaacaaa 307
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>gb|AC114643.9| Mus musculus chromosome 6, clone RP24-127D6, complete sequence
          Length = 215696

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 37     agcaacagaaagatatgacactg 59
              ||||||||||||| |||||||||
Sbjct: 169109 agcaacagaaagacatgacactg 169087
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>ref|XM_988267.1| PREDICTED: Mus musculus rearranged L-myc fusion sequence (Rlf), mRNA
          Length = 6748

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 56   actggaagtctggaacaaa 74
            |||||||||||||||||||
Sbjct: 1906 actggaagtctggaacaaa 1924
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>ref|XM_921462.2| PREDICTED: Mus musculus rearranged L-myc fusion sequence, transcript
            variant 8 (Rlf), mRNA
          Length = 7230

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 56   actggaagtctggaacaaa 74
            |||||||||||||||||||
Sbjct: 2388 actggaagtctggaacaaa 2406
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>ref|XM_355515.5| PREDICTED: Mus musculus rearranged L-myc fusion sequence, transcript
            variant 1 (Rlf), mRNA
          Length = 6585

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 56   actggaagtctggaacaaa 74
            |||||||||||||||||||
Sbjct: 1743 actggaagtctggaacaaa 1761
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>ref|XM_909848.2| PREDICTED: Mus musculus rearranged L-myc fusion sequence, transcript
            variant 5 (Rlf), mRNA
          Length = 6705

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 56   actggaagtctggaacaaa 74
            |||||||||||||||||||
Sbjct: 1905 actggaagtctggaacaaa 1923
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>ref|XM_900563.2| PREDICTED: Mus musculus rearranged L-myc fusion sequence, transcript
            variant 4 (Rlf), mRNA
          Length = 7230

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 56   actggaagtctggaacaaa 74
            |||||||||||||||||||
Sbjct: 2388 actggaagtctggaacaaa 2406
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>ref|XM_001001437.1| PREDICTED: Mus musculus rearranged L-myc fusion sequence, transcript
            variant 5 (Rlf), mRNA
          Length = 6585

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 56   actggaagtctggaacaaa 74
            |||||||||||||||||||
Sbjct: 1743 actggaagtctggaacaaa 1761
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>gb|AC124460.5| Mus musculus BAC clone RP24-142P7 from chromosome 13, complete sequence
          Length = 184155

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 73     aagaataacttacatgtgg 91
              |||||||||||||||||||
Sbjct: 104799 aagaataacttacatgtgg 104781
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>gb|AC133892.9| Mus musculus chromosome 1, clone RP23-279J5, complete sequence
          Length = 163620

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 35    ggagcaacagaaagatatg 53
             |||||||||||||||||||
Sbjct: 48564 ggagcaacagaaagatatg 48546
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>emb|AL512449.6| Human DNA sequence from clone RP11-286E7 on chromosome 1 Contains part of
              the RPS6KC1 gene for ribosomal protein S6 kinase 52kDa
              polypeptide 1 and a CpG island, complete sequence
          Length = 176690

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     tgacactggaagtctggaa 70
              |||||||||||||||||||
Sbjct: 159396 tgacactggaagtctggaa 159378
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>gb|AC108527.6| Rattus norvegicus 9 BAC CH230-7F11 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 225777

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 59    ggaagtctggaacaaagaa 77
             |||||||||||||||||||
Sbjct: 43773 ggaagtctggaacaaagaa 43791
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>emb|AL136179.15| Human DNA sequence from clone RP3-322L4 on chromosome 6 Contains the
             SOX4 gene for SRY (sex determining region Y)-box 4, a
             novel pseudogene and CpG islands, complete sequence
          Length = 128728

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 66    tggaacaaagaataactta 84
             |||||||||||||||||||
Sbjct: 53152 tggaacaaagaataactta 53134
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>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08,
              complete sequence
          Length = 129037

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 56     actggaagtctggaacaaa 74
              |||||||||||||||||||
Sbjct: 123262 actggaagtctggaacaaa 123244
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>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09,
             complete sequence
          Length = 152732

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 56    actggaagtctggaacaaa 74
             |||||||||||||||||||
Sbjct: 51285 actggaagtctggaacaaa 51267
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>emb|AL645726.22| Mouse DNA sequence from clone RP23-45M23 on chromosome 1, complete
             sequence
          Length = 231347

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 46    aagatatgacactggaagtctgg 68
             |||||||||||| ||||||||||
Sbjct: 41906 aagatatgacacaggaagtctgg 41928
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>emb|BX001068.7| Mouse DNA sequence from clone RP23-54E4 on chromosome 13 Contains the
              gene for a novel SCAN domain containing C2H2 type zinc
              finger protein, two novel genes (933017L02Rik,
              492150E05Rik), the Skz1 gene for SCAN-KRAB-zinc finger gene
              1, a ribosomal protein L29 (Rpl29) pseudogene, the Zfp96
              gene for Zinc finger protein 96, the gene for olfactory
              receptor MOR256-16, the gene for a novel protein similar to
              plasma glutathione peroxidase Gpx3, the (pseudo)gene for a
              novel protein similar to ribosomal protein L29 (Rpl29) and
              the Gpx5 gene for glutathione peroxidase 5 (epididymal
              androgen-related protein), complete sequence
          Length = 175880

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 73     aagaataacttacatgtgg 91
              |||||||||||||||||||
Sbjct: 167109 aagaataacttacatgtgg 167091
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>emb|BX537103.6| Zebrafish DNA sequence from clone CH211-194E1 in linkage group 8,
              complete sequence
          Length = 187569

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 99     actatatcacagggtgctt 117
              |||||||||||||||||||
Sbjct: 177221 actatatcacagggtgctt 177239
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>gb|AC073548.5| Homo sapiens chromosome 19 clone RP11-43N16, complete sequence
          Length = 167722

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     gaaatggggggaaacggag 38
              |||||||||||||||||||
Sbjct: 103924 gaaatggggggaaacggag 103906
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>dbj|AK132452.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732419A12 product:similar to Zinc finger
            protein Rlf (Rearranged L-myc fusion gene protein) (Zn-15
            related protein) [Homo sapiens], full insert sequence
          Length = 2575

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 56   actggaagtctggaacaaa 74
            |||||||||||||||||||
Sbjct: 1533 actggaagtctggaacaaa 1551
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>gb|AE010136.1| Pyrococcus furiosus DSM 3638, section 11 of 173 of the complete
            genome
          Length = 6244

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 89   tggagggtatactatatca 107
            |||||||||||||||||||
Sbjct: 5804 tggagggtatactatatca 5786
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>gb|AC068127.6| Homo sapiens BAC clone RP11-587O9 from 4, complete sequence
          Length = 203523

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 40    aacagaaagatatgacactggaa 62
             |||||||| ||||||||||||||
Sbjct: 71632 aacagaaaaatatgacactggaa 71610
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>dbj|AK171929.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830019O18 product:hypothetical Zn-finger,
            C2H2 type/Zinc finger C2H2 type domain profile containing
            protein, full insert sequence
          Length = 3027

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 56   actggaagtctggaacaaa 74
            |||||||||||||||||||
Sbjct: 2389 actggaagtctggaacaaa 2407
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>dbj|AK040579.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A430107H08 product:unclassifiable, full
            insert sequence
          Length = 2859

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 46   aagatatgacactggaagtctgg 68
            |||||||||||| ||||||||||
Sbjct: 1655 aagatatgacacaggaagtctgg 1633
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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 106     cacagggtgcttcacatcagcag 128
               |||||||||||||||||| ||||
Sbjct: 1714544 cacagggtgcttcacatccgcag 1714566
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 56       actggaagtctggaacaaa 74
                |||||||||||||||||||
Sbjct: 30647554 actggaagtctggaacaaa 30647536
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 55       cactggaagtctggaacaa 73
                |||||||||||||||||||
Sbjct: 27131682 cactggaagtctggaacaa 27131700
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>ref|XM_233485.3| PREDICTED: Rattus norvegicus rearranged L-myc fusion sequence
            (predicted) (Rlf_predicted), mRNA
          Length = 5934

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 56   actggaagtctggaacaaa 74
            |||||||||||||||||||
Sbjct: 2356 actggaagtctggaacaaa 2374
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>emb|BX005323.10| Zebrafish DNA sequence from clone DKEY-11F12 in linkage group 7,
            complete sequence
          Length = 219799

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 24   tggggggaaacggagcaac 42
            |||||||||||||||||||
Sbjct: 6444 tggggggaaacggagcaac 6462
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>dbj|AP004272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0427D10
          Length = 154192

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 55     cactggaagtctggaacaa 73
              |||||||||||||||||||
Sbjct: 134923 cactggaagtctggaacaa 134941
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>emb|AL606927.12| Mouse DNA sequence from clone RP23-144I6 on chromosome 4, complete
            sequence
          Length = 212373

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 56   actggaagtctggaacaaa 74
            |||||||||||||||||||
Sbjct: 8883 actggaagtctggaacaaa 8865
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>gb|M68896.1|MUSGPOAD Mouse androgen-dependent glutathione peroxidase-like protein gene,
            complete cds
          Length = 8076

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 73   aagaataacttacatgtgg 91
            |||||||||||||||||||
Sbjct: 5412 aagaataacttacatgtgg 5394


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,260,923
Number of Sequences: 3902068
Number of extensions: 1260923
Number of successful extensions: 84196
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83989
Number of HSP's gapped (non-prelim): 207
length of query: 129
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 108
effective length of database: 17,151,101,840
effective search space: 1852318998720
effective search space used: 1852318998720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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