ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5l20 |
|---|---|
| Clone Library Name | barley_pub |
>VATH_ARATH (Q9LX65) Probable vacuolar ATP synthase subunit H (EC 3.6.3.14)| (V-ATPase H subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 441 Score = 217 bits (552), Expect = 3e-56 Identities = 97/129 (75%), Positives = 121/129 (93%) Frame = -3 Query: 656 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTS 477 LK+ +K+LSSFDKYKQ+VLLGHLDW+PMHK+ NFWREN+T FEENDFQILRVL+T++DTS Sbjct: 312 LKDKIKKLSSFDKYKQEVLLGHLDWNPMHKETNFWRENVTCFEENDFQILRVLLTILDTS 371 Query: 476 TDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 +D +LAVAC+D+SQF+QYH +GR++VADLKAK+RVMKL+NH+NAEV KN++LC+QRL L Sbjct: 372 SDPRSLAVACFDISQFIQYHAAGRVIVADLKAKERVMKLINHENAEVTKNAILCIQRLLL 431 Query: 296 GAKYASFLQ 270 GAKYASFLQ Sbjct: 432 GAKYASFLQ 440
>VATH_MANSE (Q9U5N0) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 475 Score = 113 bits (282), Expect = 6e-25 Identities = 50/120 (41%), Positives = 80/120 (66%) Frame = -3 Query: 656 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTS 477 L+ +++ LSSFD+Y +V G L+WSP+HK FWREN E ++LR L+ +++ S Sbjct: 329 LQASVQDLSSFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLVHLLEKS 388 Query: 476 TDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 D LAVACYD+ ++++++P G+ ++ L K RVM L++HD+ VR +LL VQ+L + Sbjct: 389 HDPVVLAVACYDVGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMV 448
>VATH_DROME (Q9V3J1) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 468 Score = 110 bits (275), Expect = 4e-24 Identities = 47/120 (39%), Positives = 82/120 (68%) Frame = -3 Query: 656 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTS 477 L+ +++ LSSFD+Y +V G L+WSP+HK FWREN E ++++LR+L+ +++TS Sbjct: 321 LQNSVQDLSSFDEYATEVRSGRLEWSPVHKSAKFWRENAQRLNEKNYELLRILVHLLETS 380 Query: 476 TDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 D L+VAC+D+ ++++++P G+ V+ L K VM+ + H++ VR +LL VQ+L + Sbjct: 381 KDAIILSVACFDIGEYVRHYPRGKHVLEQLGGKQIVMQHLGHEDPNVRYEALLAVQKLMV 440
>VATH_PIG (Q9TVC1) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 110 bits (275), Expect = 4e-24 Identities = 47/120 (39%), Positives = 81/120 (67%) Frame = -3 Query: 656 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTS 477 L E+++ LSSFD+Y ++ G L+WSP+HK FWREN E ++++L++L +++ S Sbjct: 342 LGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVS 401 Query: 476 TDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 D LAVA +D+ ++++++P G+ V+ L K VM M+H++ +VR N+LL VQ+L + Sbjct: 402 DDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461
>VATH_MOUSE (Q8BVE3) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) Length = 483 Score = 110 bits (275), Expect = 4e-24 Identities = 47/120 (39%), Positives = 81/120 (67%) Frame = -3 Query: 656 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTS 477 L E+++ LSSFD+Y ++ G L+WSP+HK FWREN E ++++L++L +++ S Sbjct: 342 LGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVS 401 Query: 476 TDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 D LAVA +D+ ++++++P G+ V+ L K VM M+H++ +VR N+LL VQ+L + Sbjct: 402 DDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461
>VATH_HUMAN (Q9UI12) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) (VMA13) (Nef-binding protein 1) (NBP1) Length = 483 Score = 110 bits (275), Expect = 4e-24 Identities = 47/120 (39%), Positives = 81/120 (67%) Frame = -3 Query: 656 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTS 477 L E+++ LSSFD+Y ++ G L+WSP+HK FWREN E ++++L++L +++ S Sbjct: 342 LGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVS 401 Query: 476 TDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 D LAVA +D+ ++++++P G+ V+ L K VM M+H++ +VR N+LL VQ+L + Sbjct: 402 DDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461
>VATH_BOVIN (O46563) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 109 bits (273), Expect = 6e-24 Identities = 47/120 (39%), Positives = 81/120 (67%) Frame = -3 Query: 656 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTS 477 L E+++ LSSFD+Y ++ G L+WSP+HK FWREN E ++++L++L +++ S Sbjct: 342 LGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENPARLNEKNYELLKILTKLLEVS 401 Query: 476 TDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 D LAVA +D+ ++++++P G+ V+ L K VM M+H++ +VR N+LL VQ+L + Sbjct: 402 DDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461
>VATH_SCHPO (O14265) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 54 kDa subunit) Length = 450 Score = 102 bits (254), Expect = 1e-21 Identities = 47/118 (39%), Positives = 74/118 (62%) Frame = -3 Query: 656 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTS 477 L E+ K LS+FD YK ++ G L WSP H+ +FW +N E+++ +L+ L ++ + Sbjct: 321 LDESSKHLSTFDMYKSELDTGILHWSPSHRSEDFWHQNAKRLNEDNYALLKKLFHIVQYN 380 Query: 476 TDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRL 303 D T+LAVAC+DL +++ +P GR ++ AK R+M LM+H + EVR +L VQ L Sbjct: 381 EDNTSLAVACHDLGAYIRSYPEGRSLIIKYGAKQRIMDLMSHPDPEVRFEALSTVQLL 438
>VATH2_CAEEL (Q22494) Probable vacuolar ATP synthase subunit H 2 (EC 3.6.3.14)| (V-ATPase H subunit 2) (Vacuolar proton pump H subunit 2) (Vacuolar proton pump subunit SFD 2) Length = 470 Score = 101 bits (251), Expect = 2e-21 Identities = 42/113 (37%), Positives = 76/113 (67%) Frame = -3 Query: 635 LSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTDTTALA 456 LSS+D+Y +V G L WSP+HK FWREN + F + F+++++L+ ++++S D L Sbjct: 336 LSSYDEYYSEVRSGRLQWSPVHKSEKFWRENASKFNDKQFEVVKILIKLLESSHDPLILC 395 Query: 455 VACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 VA +D+ ++++++P G+ VV + K VM+L+ ++ VR ++LL VQ+L + Sbjct: 396 VASHDIGEYVRHYPRGKTVVEQYQGKAAVMRLLTAEDPNVRYHALLAVQKLMV 448
>VATH1_CAEEL (Q20666) Probable vacuolar ATP synthase subunit H 1 (EC 3.6.3.14)| (V-ATPase H subunit 1) (Vacuolar proton pump H subunit 1) (Vacuolar proton pump subunit SFD 1) Length = 451 Score = 94.7 bits (234), Expect = 2e-19 Identities = 43/120 (35%), Positives = 76/120 (63%) Frame = -3 Query: 656 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTS 477 LK+ ++ L+SFD+Y+ ++ G L WSP HK FW EN +N ++L++L+ +++ S Sbjct: 322 LKKVVQVLTSFDEYENELRQGSLHWSPAHKCEVFWNENAHRLNDNRQELLKLLVAMLEKS 381 Query: 476 TDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 297 D L VA +D+ +F++Y+P G+L V L K+ +M+L+ + VR ++LL Q+L + Sbjct: 382 NDPLVLCVAAHDIGEFVRYYPRGKLKVEQLGGKEAMMRLLTVKDPNVRYHALLAAQKLMI 441
>VATH_YEAST (P41807) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 54 kDa subunit) Length = 478 Score = 60.8 bits (146), Expect = 3e-09 Identities = 33/127 (25%), Positives = 65/127 (51%), Gaps = 9/127 (7%) Frame = -3 Query: 656 LKENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTV---- 489 L+ + L+SFD+Y ++ L WSP H D FW +NI F++++++I R L+ + Sbjct: 346 LENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 405 Query: 488 -----IDTSTDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNS 324 ++ + + VA D++ ++ P V+ K +M+L+NH ++ V+ + Sbjct: 406 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEA 465 Query: 323 LLCVQRL 303 L Q + Sbjct: 466 LKATQAI 472
>CYB52_SCHPO (Q9USM6) Probable cytochrome b5 2| Length = 129 Score = 30.8 bits (68), Expect = 3.7 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -3 Query: 446 YDLSQFLQYHPSGRLVVADLKAKD 375 YD+S+FL HP G V+ DL +D Sbjct: 29 YDISKFLDAHPGGEEVLVDLAGRD 52
>MIP1_SCHPO (P87141) WD-repeat protein mip1| Length = 1313 Score = 30.0 bits (66), Expect = 6.3 Identities = 20/95 (21%), Positives = 45/95 (47%) Frame = -3 Query: 515 QILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEV 336 QIL ++ +S + A+ + LS F + P G+L + + + +N ++ + Sbjct: 578 QILNPNSSIFPSSNISEHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSPDSLL 637 Query: 335 RKNSLLCVQRLFLGAKYASFLQV*DHKVLYLYEVL 231 R+ + LC+ +L+ A + D+ + L E++ Sbjct: 638 RQWACLCISQLWENYSEAKWSGTRDNAHVKLAEII 672
>UVRB_PROMT (Q46IE1) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 678 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = +1 Query: 214 MGFGGSNTSYKYKTLWSYTCRKLAYLAPRKSL----CTQSREFFLTSALSWFMSF 366 +G G+ ++ L + T R LA K+L C + REFF +A+ +F+S+ Sbjct: 37 LGATGTGKTFTIANLIAQTGRPALVLAHNKTLAAQLCNELREFFPDNAVEYFISY 91
>MAGG1_MOUSE (Q9CPR8) Melanoma-associated antigen G1 (MAGE-G1 antigen)| (Necdin-like protein 2) Length = 279 Score = 29.6 bits (65), Expect = 8.3 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +3 Query: 513 LEIIFLKVSDILSPEIWVFVHWRPIKMAKKHLLF 614 L +IF+K + I E+W F+ + KKHL+F Sbjct: 157 LGLIFMKGNTITETEVWDFLRRLGVYPTKKHLIF 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,114,004 Number of Sequences: 219361 Number of extensions: 1686679 Number of successful extensions: 4456 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4321 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4455 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
