>BP26_BRUSU (P0A3U9) 26 kDa periplasmic immunogenic protein precursor (28 kDa|
           outer membrane protein) (28 kDa cytosoluble protein)
           (CP28)
          Length = 250

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
 Frame = -2

Query: 588 NISDIYFIGGFGTVAWVDVKQYETIQPDKIAVDGG-------EQSLKELNAIF-SKPLRE 433
           + S I  +G F   A+    Q  T QP +IAV G        + ++  L+ +  +K  RE
Sbjct: 12  SFSTIMLVGAFSLPAFAQENQMTT-QPARIAVTGEGMMTASPDMAILNLSVLRQAKTARE 70

Query: 432 FMSAEGEVDDAALISVDSKGIDIRVRQGAQFNIQ 331
            M+A  E     L ++   GI+ R  Q    NIQ
Sbjct: 71  AMTANNEAMTKVLDAMKKAGIEDRDLQTGGINIQ 104

>BP26_BRUME (P0A3U8) 26 kDa periplasmic immunogenic protein precursor (28 kDa|
           outer membrane protein) (28 kDa cytosoluble protein)
           (CP28)
          Length = 250

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
 Frame = -2

Query: 588 NISDIYFIGGFGTVAWVDVKQYETIQPDKIAVDGG-------EQSLKELNAIF-SKPLRE 433
           + S I  +G F   A+    Q  T QP +IAV G        + ++  L+ +  +K  RE
Sbjct: 12  SFSTIMLVGAFSLPAFAQENQMTT-QPARIAVTGEGMMTASPDMAILNLSVLRQAKTARE 70

Query: 432 FMSAEGEVDDAALISVDSKGIDIRVRQGAQFNIQ 331
            M+A  E     L ++   GI+ R  Q    NIQ
Sbjct: 71  AMTANNEAMTKVLDAMKKAGIEDRDLQTGGINIQ 104

>DNLI_METKA (Q8TWN3) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 559

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = -2

Query: 504 KIAVDGGEQSLKELNAIFSKPLREFMSAEGEVDDAALISVDSKG-IDIRVRQGAQFNIQR 328
           K+A+  GE+ L+E++    +P++  ++        AL  V  KG ++I++  GA+  +  
Sbjct: 202 KVAMTKGEEGLREIDLRPMRPIKPMLAQAARNVKEALAEVGGKGAVEIKL-DGARVQVHS 260

Query: 327 LAFDVPYKVETLEEAKRALHKIIK 256
              +V      +E+   AL  I++
Sbjct: 261 DGEEVRVYTRRIEDVTHALPDIVE 284

>CARA_PSESM (Q87WP3) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 378

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 55  DTSKWVHTIWGLAXXSFSLLKRNHLILHLCTLNYMILRYFCR-LTKRACR 201
           DT +W H++W L   S   +  + L  H+   +Y +     R L +R CR
Sbjct: 166 DTYEWRHSVWNLQTDSHPEIAASELPYHVVAYDYGVKVNILRMLVERGCR 215

>RPOC_THEMA (P36252) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1690

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -2

Query: 537 DVKQYETIQPDKIAVDGGEQSLKELNAIFSKPLREFMSAEGEVDDAALISVDSKGIDIRV 358
           + + Y  I P+KI  D G Q++K+L         E + AE E +   L S  SK I +R 
Sbjct: 447 EYEAYLQIYPEKIVADAGAQAIKKL---LQNLDLEALQAEIEAELKKLPSSSSKAIKLRR 503

Query: 357 R 355
           R
Sbjct: 504 R 504

>SYF2_MAGGR (Q521C0) Pre-mRNA-splicing factor SYF2|
          Length = 340

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 23/87 (26%), Positives = 36/87 (41%)
 Frame = -2

Query: 537 DVKQYETIQPDKIAVDGGEQSLKELNAIFSKPLREFMSAEGEVDDAALISVDSKGIDIRV 358
           D   +   +PDK A+D     +K+   + +K  +  M+  GE DD   I+  +K      
Sbjct: 260 DSTDFAKNKPDKEAIDRLVNDMKKAEDVAAKKRKARMAKNGEDDDVTYINDKNK------ 313

Query: 357 RQGAQFNIQRLAFDVPYKVETLEEAKR 277
               QFN +   F   Y  E  E  +R
Sbjct: 314 ----QFNQKLARFYNKYTAEIRESFER 336

>ANGL1_HUMAN (O95841) Angiopoietin-related protein 1 precursor|
           (Angiopoietin-like 1) (Angiopoietin-3) (ANG-3)
          Length = 491

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 702 DVYPLPAEQQEWAHKQYVAKHQQWASQQWGNFYYYRMQNISDIYFIGGFG-TVAWVDVKQ 526
           D Y L  E ++W+ K+  A++  +  +    FY  R+       + G  G ++ W + KQ
Sbjct: 363 DNYKLLIELEDWSDKKVYAEYSSFRLEPESEFYRLRLGT-----YQGNAGDSMMWHNGKQ 417

Query: 525 YETIQPDK 502
           + T+  DK
Sbjct: 418 FTTLDRDK 425

>P25A_BOVIN (Q27957) Tubulin polymerization-promoting protein (TPPP) (25 kDa|
           brain-specific protein) (p25-alpha)
          Length = 218

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
 Frame = -2

Query: 453 FSKPLREFMSAEGE---VDDAALISVDSKGIDIRVRQGAQFN--IQRLAFDVPYKVETLE 289
           +SK  R+    +G    V D  ++    KG   R     QF   ++ LA    +K ++ E
Sbjct: 75  WSKLCRDCQVIDGRSVTVTDVDIVFSKIKGKSCRTITFEQFKEALEELA-KKRFKDKSAE 133

Query: 288 EAKRALHKIIKTSSK*SEGRTRPALGFTSPT-SPLCESTKITKDH 157
           EA R +HK+I+  +    G T+     +SPT S L +++K T  H
Sbjct: 134 EAVREVHKLIEGKAPIISGVTK---AISSPTVSRLTDTSKFTGSH 175

>EF3_CANGA (O93796) Elongation factor 3 (EF-3)|
          Length = 1045

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
 Frame = -3

Query: 701 MSTLCQLNNR------NGLISNTLQNINNGRL--NSGEIFTTTGCRISVTYILLEALA 552
           +S  C L++R      NG   +TL N+  G L   SGE++T   CRI+  YI   A A
Sbjct: 687 ISFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIA--YIKQHAFA 742


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,471,414
Number of Sequences: 219361
Number of extensions: 2052919
Number of successful extensions: 5762
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5752
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7536258401
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)