ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5l17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477660.1| Oryza sativa (japonica cultivar-group), mRNA 462 e-127
2ref|XM_477661.1| Oryza sativa (japonica cultivar-group), mRNA 462 e-127
3dbj|AK101812.1| Oryza sativa (japonica cultivar-group) cDNA clon... 462 e-127
4dbj|AK064087.1| Oryza sativa (japonica cultivar-group) cDNA clon... 462 e-127
5gb|AY103908.1| Zea mays PCO140340 mRNA sequence 188 2e-44
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
7dbj|AP005462.5| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
8dbj|AP005438.5| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 115 2e-22
10gb|AC093180.12| Oryza sativa chromosome 3 BAC OJ1004_D04 genomic... 115 2e-22
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
12gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete seq... 50 0.010
13dbj|AP004515.1| Lotus japonicus genomic DNA, chromosome 4, clone... 48 0.039
14dbj|AK115107.1| Ciona intestinalis cDNA, clone:cieg032g09, full ... 46 0.15
15dbj|AK113468.1| Ciona intestinalis cDNA, clone:ciad059h07, full ... 46 0.15
16gb|AC144807.23| Medicago truncatula clone mth2-9j13, complete se... 44 0.61
17ref|NM_105400.2| Arabidopsis thaliana DNA primase AT1G67320 mRNA... 42 2.4
18gb|BT015505.1| Arabidopsis thaliana At1g67320 mRNA sequence 42 2.4
19gb|BC076270.1| Danio rerio zgc:92796, mRNA (cDNA clone MGC:92796... 42 2.4
20ref|NM_001002538.1| Danio rerio zgc:92796 (zgc:92796), mRNA 42 2.4
21emb|BX816847.1|CNS0AEGZ Arabidopsis thaliana Full-length cDNA Co... 42 2.4
22emb|BX814254.1|CNS0AEHX Arabidopsis thaliana Full-length cDNA Co... 42 2.4
23emb|BX813496.1|CNS0AEHS Arabidopsis thaliana Full-length cDNA Co... 42 2.4
24gb|BT003155.1| Arabidopsis thaliana At1g67320 mRNA, complete cds 42 2.4
25gb|AY084736.1| Arabidopsis thaliana clone 116252 mRNA, complete ... 42 2.4
26gb|AC002130.2|AC002130 Genomic sequence for Arabidopsis thaliana... 42 2.4
27emb|AL611945.21| Mouse DNA sequence from clone RP23-48A7 on chro... 42 2.4
28gb|AY659265.1| Synthetic construct Peudomonas aeruginosa clone F... 40 9.5
29emb|AL121980.14|HS1007G16 Human DNA sequence from clone RP5-1007... 40 9.5
30emb|AJ313422.1|PST313422 Pseudomonas stutzeri dctBDPMQ region, s... 40 9.5
31gb|AC158510.2| Mus musculus BAC clone RP24-236E11 from chromosom... 40 9.5
32gb|AC009231.4| Homo sapiens BAC clone RP11-350I24 from 2, comple... 40 9.5
33gb|AE004929.1| Pseudomonas aeruginosa PAO1, section 490 of 529 o... 40 9.5
34gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 9.5
35emb|AL845293.5| Mouse DNA sequence from clone RP23-328P7 on chro... 40 9.5 
>ref|XM_477660.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1942

 Score =  462 bits (233), Expect = e-127
 Identities = 338/373 (90%)
 Strand = Plus / Minus

                                                                        
Query: 320  ctctgtactgtttggttcttggcttgcaagactttctggctttcgctgaaatactgatta 379
            ||||| |||| ||| ||||| |||| |||||||||||||||||| |||||||||||||||
Sbjct: 1467 ctctgcactgcttgattctttgctttcaagactttctggctttcactgaaatactgatta 1408

                                                                        
Query: 380  ggatgattgattccggtatcacatgagacaccgtgagttgcctcaaaagtcattgtgcaa 439
            |||||||||||||| ||||||||||||||||| ||   ||||||||||||||| ||||||
Sbjct: 1407 ggatgattgattccagtatcacatgagacaccatgttctgcctcaaaagtcatcgtgcaa 1348

                                                                        
Query: 440  gctagctggtaatgcctgttcttcactttatccagtatcccttccaaagcatttccactg 499
            ||||||||||| |||||||||||||||||||||| |||| |||| || | ||  ||||||
Sbjct: 1347 gctagctggtagtgcctgttcttcactttatccattatctcttctaatggatgaccactg 1288

                                                                        
Query: 500  acacccatattgttgagagctgctctcaagttctcttcaccaaaatgtcgataagggcaa 559
            |  ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1287 attcccattttattgagagctgctctcaagttgtcttcaccaaaatgtcgataagggcaa 1228

                                                                        
Query: 560  ccatggtgatcaccaacaccaggtgtcgcagagatgatcttttgacatgaatatggagtg 619
            |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 1227 ccatggtgatcaccaacaccaggtgttgcagagataatcttttgacatgaatacggagtg 1168

                                                                        
Query: 620  taatccgttcgttttccttcttttccataattgtgtctgataccatatgcatattccttg 679
            ||||| |||||||||||||| ||||||||||| || |||||||  || ||||||||||||
Sbjct: 1167 taatctgttcgttttccttcctttccataattatgcctgatactgtaggcatattccttg 1108

                         
Query: 680  tcaaatcgctcag 692
            |||||||||||||
Sbjct: 1107 tcaaatcgctcag 1095
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>ref|XM_477661.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1372

 Score =  462 bits (233), Expect = e-127
 Identities = 338/373 (90%)
 Strand = Plus / Minus

                                                                        
Query: 320  ctctgtactgtttggttcttggcttgcaagactttctggctttcgctgaaatactgatta 379
            ||||| |||| ||| ||||| |||| |||||||||||||||||| |||||||||||||||
Sbjct: 1097 ctctgcactgcttgattctttgctttcaagactttctggctttcactgaaatactgatta 1038

                                                                        
Query: 380  ggatgattgattccggtatcacatgagacaccgtgagttgcctcaaaagtcattgtgcaa 439
            |||||||||||||| ||||||||||||||||| ||   ||||||||||||||| ||||||
Sbjct: 1037 ggatgattgattccagtatcacatgagacaccatgttctgcctcaaaagtcatcgtgcaa 978

                                                                        
Query: 440  gctagctggtaatgcctgttcttcactttatccagtatcccttccaaagcatttccactg 499
            ||||||||||| |||||||||||||||||||||| |||| |||| || | ||  ||||||
Sbjct: 977  gctagctggtagtgcctgttcttcactttatccattatctcttctaatggatgaccactg 918

                                                                        
Query: 500  acacccatattgttgagagctgctctcaagttctcttcaccaaaatgtcgataagggcaa 559
            |  ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 917  attcccattttattgagagctgctctcaagttgtcttcaccaaaatgtcgataagggcaa 858

                                                                        
Query: 560  ccatggtgatcaccaacaccaggtgtcgcagagatgatcttttgacatgaatatggagtg 619
            |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 857  ccatggtgatcaccaacaccaggtgttgcagagataatcttttgacatgaatacggagtg 798

                                                                        
Query: 620  taatccgttcgttttccttcttttccataattgtgtctgataccatatgcatattccttg 679
            ||||| |||||||||||||| ||||||||||| || |||||||  || ||||||||||||
Sbjct: 797  taatctgttcgttttccttcctttccataattatgcctgatactgtaggcatattccttg 738

                         
Query: 680  tcaaatcgctcag 692
            |||||||||||||
Sbjct: 737  tcaaatcgctcag 725
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>dbj|AK101812.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066O22, full
            insert sequence
          Length = 1942

 Score =  462 bits (233), Expect = e-127
 Identities = 338/373 (90%)
 Strand = Plus / Minus

                                                                        
Query: 320  ctctgtactgtttggttcttggcttgcaagactttctggctttcgctgaaatactgatta 379
            ||||| |||| ||| ||||| |||| |||||||||||||||||| |||||||||||||||
Sbjct: 1467 ctctgcactgcttgattctttgctttcaagactttctggctttcactgaaatactgatta 1408

                                                                        
Query: 380  ggatgattgattccggtatcacatgagacaccgtgagttgcctcaaaagtcattgtgcaa 439
            |||||||||||||| ||||||||||||||||| ||   ||||||||||||||| ||||||
Sbjct: 1407 ggatgattgattccagtatcacatgagacaccatgttctgcctcaaaagtcatcgtgcaa 1348

                                                                        
Query: 440  gctagctggtaatgcctgttcttcactttatccagtatcccttccaaagcatttccactg 499
            ||||||||||| |||||||||||||||||||||| |||| |||| || | ||  ||||||
Sbjct: 1347 gctagctggtagtgcctgttcttcactttatccattatctcttctaatggatgaccactg 1288

                                                                        
Query: 500  acacccatattgttgagagctgctctcaagttctcttcaccaaaatgtcgataagggcaa 559
            |  ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1287 attcccattttattgagagctgctctcaagttgtcttcaccaaaatgtcgataagggcaa 1228

                                                                        
Query: 560  ccatggtgatcaccaacaccaggtgtcgcagagatgatcttttgacatgaatatggagtg 619
            |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 1227 ccatggtgatcaccaacaccaggtgttgcagagataatcttttgacatgaatacggagtg 1168

                                                                        
Query: 620  taatccgttcgttttccttcttttccataattgtgtctgataccatatgcatattccttg 679
            ||||| |||||||||||||| ||||||||||| || |||||||  || ||||||||||||
Sbjct: 1167 taatctgttcgttttccttcctttccataattatgcctgatactgtaggcatattccttg 1108

                         
Query: 680  tcaaatcgctcag 692
            |||||||||||||
Sbjct: 1107 tcaaatcgctcag 1095
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>dbj|AK064087.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-C02, full
            insert sequence
          Length = 1372

 Score =  462 bits (233), Expect = e-127
 Identities = 338/373 (90%)
 Strand = Plus / Minus

                                                                        
Query: 320  ctctgtactgtttggttcttggcttgcaagactttctggctttcgctgaaatactgatta 379
            ||||| |||| ||| ||||| |||| |||||||||||||||||| |||||||||||||||
Sbjct: 1097 ctctgcactgcttgattctttgctttcaagactttctggctttcactgaaatactgatta 1038

                                                                        
Query: 380  ggatgattgattccggtatcacatgagacaccgtgagttgcctcaaaagtcattgtgcaa 439
            |||||||||||||| ||||||||||||||||| ||   ||||||||||||||| ||||||
Sbjct: 1037 ggatgattgattccagtatcacatgagacaccatgttctgcctcaaaagtcatcgtgcaa 978

                                                                        
Query: 440  gctagctggtaatgcctgttcttcactttatccagtatcccttccaaagcatttccactg 499
            ||||||||||| |||||||||||||||||||||| |||| |||| || | ||  ||||||
Sbjct: 977  gctagctggtagtgcctgttcttcactttatccattatctcttctaatggatgaccactg 918

                                                                        
Query: 500  acacccatattgttgagagctgctctcaagttctcttcaccaaaatgtcgataagggcaa 559
            |  ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 917  attcccattttattgagagctgctctcaagttgtcttcaccaaaatgtcgataagggcaa 858

                                                                        
Query: 560  ccatggtgatcaccaacaccaggtgtcgcagagatgatcttttgacatgaatatggagtg 619
            |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 857  ccatggtgatcaccaacaccaggtgttgcagagataatcttttgacatgaatacggagtg 798

                                                                        
Query: 620  taatccgttcgttttccttcttttccataattgtgtctgataccatatgcatattccttg 679
            ||||| |||||||||||||| ||||||||||| || |||||||  || ||||||||||||
Sbjct: 797  taatctgttcgttttccttcctttccataattatgcctgatactgtaggcatattccttg 738

                         
Query: 680  tcaaatcgctcag 692
            |||||||||||||
Sbjct: 737  tcaaatcgctcag 725
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>gb|AY103908.1| Zea mays PCO140340 mRNA sequence
          Length = 631

 Score =  188 bits (95), Expect = 2e-44
 Identities = 191/223 (85%)
 Strand = Plus / Minus

                                                                       
Query: 328 tgtttggttcttggcttgcaagactttctggctttcgctgaaatactgattaggatgatt 387
           ||||||||| |||||| |||  |||||||||||||| |||||||| ||||| ||||| ||
Sbjct: 242 tgtttggtttttggctcgcagaactttctggctttcactgaaatattgatttggatggtt 183

                                                                       
Query: 388 gattccggtatcacatgagacaccgtgagttgcctcaaaagtcattgtgcaagctagctg 447
           |||||| | |||||| ||||||||||| || |||||||| || | ||||||||||| |||
Sbjct: 182 gattccagaatcacaggagacaccgtgtgtggcctcaaaggttaatgtgcaagctacctg 123

                                                                       
Query: 448 gtaatgcctgttcttcactttatccagtatcccttccaaagcatttccactgacacccat 507
           |||||||||||||||||||||||||| || | ||||||| ||||  ||||  || |||||
Sbjct: 122 gtaatgcctgttcttcactttatccattacctcttccaatgcatgcccaccaacgcccat 63

                                                      
Query: 508 attgttgagagctgctctcaagttctcttcaccaaaatgtcga 550
            |||||||| ||||| | ||| || ||||||||||||||||||
Sbjct: 62  tttgttgagtgctgcccgcaaattttcttcaccaaaatgtcga 20
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  149 bits (75), Expect = 1e-32
 Identities = 84/87 (96%)
 Strand = Plus / Plus

                                                                            
Query: 539      ccaaaatgtcgataagggcaaccatggtgatcaccaacaccaggtgtcgcagagatgatc 598
                ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 12522933 ccaaaatgtcgataagggcaaccatggtgatcaccaacaccaggtgttgcagagataatc 12522992

                                           
Query: 599      ttttgacatgaatatggagtgtaatcc 625
                |||||||||||||| ||||||||||||
Sbjct: 12522993 ttttgacatgaatacggagtgtaatcc 12523019



 Score =  149 bits (75), Expect = 1e-32
 Identities = 99/107 (92%)
 Strand = Plus / Plus

                                                                            
Query: 341      gcttgcaagactttctggctttcgctgaaatactgattaggatgattgattccggtatca 400
                |||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 12522422 gctttcaagactttctggctttcactgaaatactgattaggatgattgattccagtatca 12522481

                                                               
Query: 401      catgagacaccgtgagttgcctcaaaagtcattgtgcaagctagctg 447
                ||||||||||| ||   ||||||||||||||| ||||||||||||||
Sbjct: 12522482 catgagacaccatgttctgcctcaaaagtcatcgtgcaagctagctg 12522528



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                            
Query: 626      gttcgttttccttcttttccataattgtgtctgataccatatgcatattccttgtcaaat 685
                |||||||||||||| ||||||||||| || |||||||  || ||||||||||||||||||
Sbjct: 12523096 gttcgttttccttcctttccataattatgcctgatactgtaggcatattccttgtcaaat 12523155

                       
Query: 686      cgctcag 692
                |||||||
Sbjct: 12523156 cgctcag 12523162



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 82/95 (86%)
 Strand = Plus / Plus

                                                                            
Query: 445      ctggtaatgcctgttcttcactttatccagtatcccttccaaagcatttccactgacacc 504
                |||||| |||||||||||||||||||||| |||| |||| || | ||  |||||||  ||
Sbjct: 12522609 ctggtagtgcctgttcttcactttatccattatctcttctaatggatgaccactgattcc 12522668

                                                   
Query: 505      catattgttgagagctgctctcaagttctcttcac 539
                ||| || |||||||||||||||||||| |||||||
Sbjct: 12522669 cattttattgagagctgctctcaagttgtcttcac 12522703
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>dbj|AP005462.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0613B07
          Length = 191756

 Score =  149 bits (75), Expect = 1e-32
 Identities = 84/87 (96%)
 Strand = Plus / Plus

                                                                          
Query: 539    ccaaaatgtcgataagggcaaccatggtgatcaccaacaccaggtgtcgcagagatgatc 598
              ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 167215 ccaaaatgtcgataagggcaaccatggtgatcaccaacaccaggtgttgcagagataatc 167274

                                         
Query: 599    ttttgacatgaatatggagtgtaatcc 625
              |||||||||||||| ||||||||||||
Sbjct: 167275 ttttgacatgaatacggagtgtaatcc 167301



 Score =  149 bits (75), Expect = 1e-32
 Identities = 99/107 (92%)
 Strand = Plus / Plus

                                                                          
Query: 341    gcttgcaagactttctggctttcgctgaaatactgattaggatgattgattccggtatca 400
              |||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 166704 gctttcaagactttctggctttcactgaaatactgattaggatgattgattccagtatca 166763

                                                             
Query: 401    catgagacaccgtgagttgcctcaaaagtcattgtgcaagctagctg 447
              ||||||||||| ||   ||||||||||||||| ||||||||||||||
Sbjct: 166764 catgagacaccatgttctgcctcaaaagtcatcgtgcaagctagctg 166810



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                          
Query: 626    gttcgttttccttcttttccataattgtgtctgataccatatgcatattccttgtcaaat 685
              |||||||||||||| ||||||||||| || |||||||  || ||||||||||||||||||
Sbjct: 167378 gttcgttttccttcctttccataattatgcctgatactgtaggcatattccttgtcaaat 167437

                     
Query: 686    cgctcag 692
              |||||||
Sbjct: 167438 cgctcag 167444



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 82/95 (86%)
 Strand = Plus / Plus

                                                                          
Query: 445    ctggtaatgcctgttcttcactttatccagtatcccttccaaagcatttccactgacacc 504
              |||||| |||||||||||||||||||||| |||| |||| || | ||  |||||||  ||
Sbjct: 166891 ctggtagtgcctgttcttcactttatccattatctcttctaatggatgaccactgattcc 166950

                                                 
Query: 505    catattgttgagagctgctctcaagttctcttcac 539
              ||| || |||||||||||||||||||| |||||||
Sbjct: 166951 cattttattgagagctgctctcaagttgtcttcac 166985
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>dbj|AP005438.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1723_B06
          Length = 136853

 Score =  149 bits (75), Expect = 1e-32
 Identities = 84/87 (96%)
 Strand = Plus / Plus

                                                                        
Query: 539  ccaaaatgtcgataagggcaaccatggtgatcaccaacaccaggtgtcgcagagatgatc 598
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 7626 ccaaaatgtcgataagggcaaccatggtgatcaccaacaccaggtgttgcagagataatc 7685

                                       
Query: 599  ttttgacatgaatatggagtgtaatcc 625
            |||||||||||||| ||||||||||||
Sbjct: 7686 ttttgacatgaatacggagtgtaatcc 7712



 Score =  149 bits (75), Expect = 1e-32
 Identities = 99/107 (92%)
 Strand = Plus / Plus

                                                                        
Query: 341  gcttgcaagactttctggctttcgctgaaatactgattaggatgattgattccggtatca 400
            |||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 7115 gctttcaagactttctggctttcactgaaatactgattaggatgattgattccagtatca 7174

                                                           
Query: 401  catgagacaccgtgagttgcctcaaaagtcattgtgcaagctagctg 447
            ||||||||||| ||   ||||||||||||||| ||||||||||||||
Sbjct: 7175 catgagacaccatgttctgcctcaaaagtcatcgtgcaagctagctg 7221



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                        
Query: 626  gttcgttttccttcttttccataattgtgtctgataccatatgcatattccttgtcaaat 685
            |||||||||||||| ||||||||||| || |||||||  || ||||||||||||||||||
Sbjct: 7789 gttcgttttccttcctttccataattatgcctgatactgtaggcatattccttgtcaaat 7848

                   
Query: 686  cgctcag 692
            |||||||
Sbjct: 7849 cgctcag 7855



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 82/95 (86%)
 Strand = Plus / Plus

                                                                        
Query: 445  ctggtaatgcctgttcttcactttatccagtatcccttccaaagcatttccactgacacc 504
            |||||| |||||||||||||||||||||| |||| |||| || | ||  |||||||  ||
Sbjct: 7302 ctggtagtgcctgttcttcactttatccattatctcttctaatggatgaccactgattcc 7361

                                               
Query: 505  catattgttgagagctgctctcaagttctcttcac 539
            ||| || |||||||||||||||||||| |||||||
Sbjct: 7362 cattttattgagagctgctctcaagttgtcttcac 7396
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  115 bits (58), Expect = 2e-22
 Identities = 95/106 (89%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                            
Query: 341      gcttgcaagactttctggctttcgctgaaatactgattaggatgattgattccggtatca 400
                |||| ||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 18505166 gctttcaaaactttctgactttcactgaaatactgattaggatgattgattccagtatca 18505107

                                                              
Query: 401      catgagacaccgtgagttgcctcaaaagtcattgtgcaagctagct 446
                | ||||||||| || | |||||| |||||||| |||||||||||||
Sbjct: 18505106 c-tgagacaccatgtgctgcctcgaaagtcatcgtgcaagctagct 18505062
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>gb|AC093180.12| Oryza sativa chromosome 3 BAC OJ1004_D04 genomic sequence, complete
              sequence
          Length = 158170

 Score =  115 bits (58), Expect = 2e-22
 Identities = 95/106 (89%), Gaps = 1/106 (0%)
 Strand = Plus / Plus

                                                                          
Query: 341    gcttgcaagactttctggctttcgctgaaatactgattaggatgattgattccggtatca 400
              |||| ||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 132511 gctttcaaaactttctgactttcactgaaatactgattaggatgattgattccagtatca 132570

                                                            
Query: 401    catgagacaccgtgagttgcctcaaaagtcattgtgcaagctagct 446
              | ||||||||| || | |||||| |||||||| |||||||||||||
Sbjct: 132571 c-tgagacaccatgtgctgcctcgaaagtcatcgtgcaagctagct 132615
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  115 bits (58), Expect = 2e-22
 Identities = 95/106 (89%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                            
Query: 341      gcttgcaagactttctggctttcgctgaaatactgattaggatgattgattccggtatca 400
                |||| ||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 18499207 gctttcaaaactttctgactttcactgaaatactgattaggatgattgattccagtatca 18499148

                                                              
Query: 401      catgagacaccgtgagttgcctcaaaagtcattgtgcaagctagct 446
                | ||||||||| || | |||||| |||||||| |||||||||||||
Sbjct: 18499147 c-tgagacaccatgtgctgcctcgaaagtcatcgtgcaagctagct 18499103
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>gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete sequence
          Length = 117645

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 542   aaatgtcgataagggcaaccatggtgatcaccaacaccagg 582
             ||||||||||| ||||||||||| ||||| ||| |||||||
Sbjct: 72546 aaatgtcgataggggcaaccatgatgatctccagcaccagg 72586
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>dbj|AP004515.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT04F23, TM0044a,
             complete sequence
          Length = 65620

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 69/84 (82%)
 Strand = Plus / Minus

                                                                         
Query: 542   aaatgtcgataagggcaaccatggtgatcaccaacaccaggtgtcgcagagatgatcttt 601
             ||||||| ||| ||||||||||| ||||| ||| ||||||| || |  || || | ||||
Sbjct: 52505 aaatgtctataggggcaaccatgctgatctccagcaccaggagttgatgaaataaccttt 52446

                                     
Query: 602   tgacatgaatatggagtgtaatcc 625
             ||||| ||||| ||||| ||||||
Sbjct: 52445 tgacaagaatagggagtataatcc 52422
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>dbj|AK115107.1| Ciona intestinalis cDNA, clone:cieg032g09, full insert sequence
          Length = 1714

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 626  gttcgttttccttcttttccataattgtgtctgat 660
            |||| |||||||||||| ||||| |||||||||||
Sbjct: 1170 gttctttttccttctttaccatagttgtgtctgat 1136
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>dbj|AK113468.1| Ciona intestinalis cDNA, clone:ciad059h07, full insert sequence
          Length = 1727

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 626  gttcgttttccttcttttccataattgtgtctgat 660
            |||| |||||||||||| ||||| |||||||||||
Sbjct: 1178 gttctttttccttctttaccatagttgtgtctgat 1144
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>gb|AC144807.23| Medicago truncatula clone mth2-9j13, complete sequence
          Length = 115904

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 412   gtgagttgcctcaaaagtcatt 433
             ||||||||||||||||||||||
Sbjct: 34167 gtgagttgcctcaaaagtcatt 34188
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>ref|NM_105400.2| Arabidopsis thaliana DNA primase AT1G67320 mRNA, complete cds
          Length = 1484

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 542  aaatgtcgataagggcaaccatggtgatcaccaacaccagg 582
            ||||||||||||||||| || || ||||| ||| |||||||
Sbjct: 1130 aaatgtcgataagggcagccgtgatgatccccagcaccagg 1090
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>gb|BT015505.1| Arabidopsis thaliana At1g67320 mRNA sequence
          Length = 1362

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 542  aaatgtcgataagggcaaccatggtgatcaccaacaccagg 582
            ||||||||||||||||| || || ||||| ||| |||||||
Sbjct: 1136 aaatgtcgataagggcagccgtgatgatccccagcaccagg 1096
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>gb|BC076270.1| Danio rerio zgc:92796, mRNA (cDNA clone MGC:92796 IMAGE:7088681),
           complete cds
          Length = 1136

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 448 gtaatgcctgttcttcacttt 468
           |||||||||||||||||||||
Sbjct: 861 gtaatgcctgttcttcacttt 881
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>ref|NM_001002538.1| Danio rerio zgc:92796 (zgc:92796), mRNA
          Length = 1136

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 448 gtaatgcctgttcttcacttt 468
           |||||||||||||||||||||
Sbjct: 861 gtaatgcctgttcttcacttt 881
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>emb|BX816847.1|CNS0AEGZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH71ZA12 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1474

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 542  aaatgtcgataagggcaaccatggtgatcaccaacaccagg 582
            ||||||||||||||||| || || ||||| ||| |||||||
Sbjct: 1119 aaatgtcgataagggcagccgtgatgatccccagcaccagg 1079
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>emb|BX814254.1|CNS0AEHX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB64ZE12 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1491

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 542  aaatgtcgataagggcaaccatggtgatcaccaacaccagg 582
            ||||||||||||||||| || || ||||| ||| |||||||
Sbjct: 1135 aaatgtcgataagggcagccgtgatgatccccagcaccagg 1095
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>emb|BX813496.1|CNS0AEHS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB20ZE05 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1486

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 542  aaatgtcgataagggcaaccatggtgatcaccaacaccagg 582
            ||||||||||||||||| || || ||||| ||| |||||||
Sbjct: 1130 aaatgtcgataagggcagccgtgatgatccccagcaccagg 1090
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>gb|BT003155.1| Arabidopsis thaliana At1g67320 mRNA, complete cds
          Length = 1365

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 542  aaatgtcgataagggcaaccatggtgatcaccaacaccagg 582
            ||||||||||||||||| || || ||||| ||| |||||||
Sbjct: 1139 aaatgtcgataagggcagccgtgatgatccccagcaccagg 1099
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>gb|AY084736.1| Arabidopsis thaliana clone 116252 mRNA, complete sequence
          Length = 1479

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 542  aaatgtcgataagggcaaccatggtgatcaccaacaccagg 582
            ||||||||||||||||| || || ||||| ||| |||||||
Sbjct: 1158 aaatgtcgataagggcagccgtgatgatccccagcaccagg 1118
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>gb|AC002130.2|AC002130 Genomic sequence for Arabidopsis thaliana BAC F1N21 from chromosome I,
             complete sequence
          Length = 114738

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 542   aaatgtcgataagggcaaccatggtgatcaccaacaccagg 582
             ||||||||||||||||| || || ||||| ||| |||||||
Sbjct: 69105 aaatgtcgataagggcagccgtgatgatccccagcaccagg 69145
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>emb|AL611945.21| Mouse DNA sequence from clone RP23-48A7 on chromosome 4, complete
              sequence
          Length = 163383

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 638    tcttttccataattgtgtctg 658
              |||||||||||||||||||||
Sbjct: 119075 tcttttccataattgtgtctg 119095
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>gb|AY659265.1| Synthetic construct Peudomonas aeruginosa clone FLH041920.01F
           PA5167 gene, partial cds
          Length = 996

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 561 catggtgatcaccaacacca 580
           ||||||||||||||||||||
Sbjct: 708 catggtgatcaccaacacca 727
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>emb|AL121980.14|HS1007G16 Human DNA sequence from clone RP5-1007G16 on chromosome 1p34.2-35.3
             Contains part of the CSMD2 gene for CUB and Sushi multiple
             domains 2 and two novel transcripts, complete sequence
          Length = 130604

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 520   tgctctcaagttctcttcac 539
             ||||||||||||||||||||
Sbjct: 63670 tgctctcaagttctcttcac 63689
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>emb|AJ313422.1|PST313422 Pseudomonas stutzeri dctBDPMQ region, strain A15101
          Length = 9408

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 561  catggtgatcaccaacacca 580
            ||||||||||||||||||||
Sbjct: 6548 catggtgatcaccaacacca 6567
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>gb|AC158510.2| Mus musculus BAC clone RP24-236E11 from chromosome 9, complete sequence
          Length = 178963

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    agtttctcttctgttgctaa 107
             ||||||||||||||||||||
Sbjct: 83476 agtttctcttctgttgctaa 83495
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>gb|AC009231.4| Homo sapiens BAC clone RP11-350I24 from 2, complete sequence
          Length = 127396

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 504   ccatattgttgagagctgctctcaagtt 531
             |||| |||||||| ||||||||||||||
Sbjct: 27363 ccatcttgttgagggctgctctcaagtt 27390
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>gb|AE004929.1| Pseudomonas aeruginosa PAO1, section 490 of 529 of the complete
            genome
          Length = 10638

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 561  catggtgatcaccaacacca 580
            ||||||||||||||||||||
Sbjct: 7995 catggtgatcaccaacacca 8014
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 244     acaccgagctgctgagtttc 263
               ||||||||||||||||||||
Sbjct: 1090864 acaccgagctgctgagtttc 1090883
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>emb|AL845293.5| Mouse DNA sequence from clone RP23-328P7 on chromosome 2, complete
             sequence
          Length = 212001

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 630   gttttccttcttttccataattgt 653
             |||||||||| |||||||||||||
Sbjct: 58864 gttttccttcctttccataattgt 58841


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,439,021
Number of Sequences: 3902068
Number of extensions: 5439021
Number of successful extensions: 105558
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105393
Number of HSP's gapped (non-prelim): 162
length of query: 692
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 669
effective length of database: 17,143,297,704
effective search space: 11468866163976
effective search space used: 11468866163976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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