>CWC15_EMENI (Q5B020) Pre-mRNA-splicing factor cwc15|
          Length = 232

 Score = 76.6 bits (187), Expect = 1e-14
 Identities = 35/63 (55%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
 Frame = -1

Query: 339 ELMRGNPXINMNNSGSFNVKRRWDDDVVFKNQARG-ETXTPKRFIXDTIRSDFHRKFLHR 163
           ++ RGNP +N ++   FN+KRRWDDDVVFKNQARG E    K F+ D +RSDFH+KF+ +
Sbjct: 173 DIARGNPLLNPSD---FNIKRRWDDDVVFKNQARGTEDKRGKEFVNDLLRSDFHKKFMSK 229

Query: 162 YMK 154
           Y++
Sbjct: 230 YVR 232

>CWC15_SCHPO (P78794) Pre-mRNA-splicing factor cwc15 (Complexed with cdc5|
           protein 15) (Cell cycle control protein cwf15)
          Length = 265

 Score = 70.1 bits (170), Expect = 1e-12
 Identities = 32/62 (51%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
 Frame = -1

Query: 339 ELMRGNPXINMNNSGSFNVKRRWDDDVVFKNQARGETXTPK-RFIXDTIRSDFHRKFLHR 163
           E+  GN  +N  +SGSF VKRRWD+DVVF+N  +G   TP+  F+ D +RS+FH+KFL R
Sbjct: 203 EIAFGNELLNKASSGSFQVKRRWDEDVVFRNTHKGVDDTPRPGFVNDMLRSEFHKKFLAR 262

Query: 162 YM 157
           ++
Sbjct: 263 FV 264

>CWC15_YARLI (Q6C0E6) Pre-mRNA-splicing factor CWC15|
          Length = 215

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 25/58 (43%), Positives = 39/58 (67%)
 Frame = -1

Query: 327 GNPXINMNNSGSFNVKRRWDDDVVFKNQARGETXTPKRFIXDTIRSDFHRKFLHRYMK 154
           GNP +N        +KR+W++DVVF+NQ + +      ++ D IRSDFHRKF++RY++
Sbjct: 164 GNPLMN-----PVAIKRKWNEDVVFRNQTK-QARKEDSYVNDLIRSDFHRKFMNRYVR 215

>CWC15_DEBHA (Q6BP48) Pre-mRNA-splicing factor CWC15|
          Length = 226

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 315 INMNNSGSFNVKRRWDDDVVFKNQARGETXTPKRFIXDTIRSDFHRKFLHRYMK 154
           +  +   +F +K+ W D   FK Q        + F  DT+ S+FH+ FL +Y++
Sbjct: 173 VGASTEANFKIKKSWRDSTAFKKQNSQNKNDDETFTNDTLNSEFHQNFLTKYIR 226

>CWC15_CANAL (Q59PD3) Pre-mRNA-splicing factor CWC15|
          Length = 224

 Score = 35.4 bits (80), Expect = 0.035
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 324 NPXINMNNSGSFNVKRRWDDDVVFKNQARGETXTPKR--FIXDTIRSDFHRKFLHRYMK 154
           N  + +    S   K+ W     F N+++ E+   +   +  DT+ S  H+KF+ +Y++
Sbjct: 166 NNSLTLQTHDSSTKKKSWRSSTTFNNKSKKESTNDRNNNYTTDTLNSQHHQKFMSKYIR 224

>IAR1_ARATH (Q9M647) IAA-alanine resistance protein 1|
          Length = 338

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 136 KRTAASFHVPMQKLAVEITSDGVXDEPFRCLGLSTSLVLEY 258
           ++T+AS          EITSDG  D+P +    S+SLV  Y
Sbjct: 285 RKTSASDATDKSDSGTEITSDGKSDKPEQVETRSSSLVFGY 325

>YNX0_YEAST (P53861) Hypothetical 44.0 kDa protein in CSL4-URE2 intergenic|
           region
          Length = 379

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 297 GSFNVKRRWDDDVVFKNQARGETXTPKR 214
           G FN+ +R    V F  QA G++ +PK+
Sbjct: 211 GGFNIAKRHAQRVAFGGQAGGQSSSPKK 238

>ZN683_HUMAN (Q8IZ20) Zinc finger protein 683|
          Length = 509

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 235 RDXDTETVHXRHHQK*FPPQVSA*VHEMXLLYALCCMDSMHAG 107
           R   T+ +H + H +   PQ    VH    L +L C+   H G
Sbjct: 417 RSRFTQHIHLKLHHRLHAPQPCGLVHTQLPLASLACLAQWHQG 459

>CI084_HUMAN (Q5VXU9) Protein C9orf84|
          Length = 1444

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 223 CLGLSTSLVLEYNIIIPPSLDVE 291
           CL   +S ++EY  +IPPSL  E
Sbjct: 169 CLNEPSSFLIEYEFLIPPSLKPE 191

>CWC15_YEAST (Q03772) Pre-mRNA-splicing factor CWC15 (Complexed with CEF1|
           protein 15)
          Length = 175

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
 Frame = -1

Query: 333 MRGNPXINMNNSGSFNVKRRWDDDVVF-KNQARGETXTPKR--------FIXDTIRSDFH 181
           + GN  +   NS     +R W     F +++   ET   +         +I D  +S++H
Sbjct: 111 LEGNEQLKGGNSS----RRSWRKGTAFGRHKVTKETNIKEHATKKSASGYINDMTKSEYH 166

Query: 180 RKFLHRYMK 154
           ++FLH++++
Sbjct: 167 QEFLHKHVR 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,258,607
Number of Sequences: 219361
Number of extensions: 771854
Number of successful extensions: 1413
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)