| Clone Name | rbags6a14 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X68654.1|HVCW21 H.vulgare Cw-21 mRNA Length = 705 Score = 101 bits (51), Expect = 3e-19 Identities = 57/60 (95%) Strand = Plus / Minus Query: 39 atatatatcccacatgaagataatatgagagcatttattcatatatangnangtatgtgt 98 ||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| Sbjct: 520 atatatatcccacatgaagataatatgagagcatttattcatatatatgtatgtatgtgt 461
>emb|Z66529.1|HVGLTP4X9 H.vulgare Ltp4.2 gene Length = 1567 Score = 63.9 bits (32), Expect = 8e-08 Identities = 51/57 (89%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 42 tatatcccacatgaagataatatgagagcatttattcatatatangnangtatgtgt 98 ||||||||||||||||||||||| | ||||||||||||||||| | | |||||||| Sbjct: 1121 tatatcccacatgaagataatat-tgtgcatttattcatatatatgtatgtatgtgt 1066
>gb|U63993.1|HVU63993 Hordeum vulgare lipid transfer protein (blt4.9) gene, complete cds Length = 3238 Score = 63.9 bits (32), Expect = 8e-08 Identities = 51/57 (89%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 42 tatatcccacatgaagataatatgagagcatttattcatatatangnangtatgtgt 98 ||||||||||||||||||||||| | ||||||||||||||||| | | |||||||| Sbjct: 2517 tatatcccacatgaagataatat-tgtgcatttattcatatatatgtatgtatgtgt 2462
>emb|AJ784903.1| Triticum turgidum subsp. durum partial mRNA for type 1 non-specific lipid transfer protein precursor (ltp9.2 gene) Length = 604 Score = 60.0 bits (30), Expect = 1e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 56 agataatatgagagcatttattcatatata 85 |||||||||||||||||||||||||||||| Sbjct: 442 agataatatgagagcatttattcatatata 413
>emb|AJ852556.1| Triticum aestivum ltp9.2d gene for type 1 non specific lipid transfer protein precursor Length = 2087 Score = 60.0 bits (30), Expect = 1e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 56 agataatatgagagcatttattcatatata 85 |||||||||||||||||||||||||||||| Sbjct: 1738 agataatatgagagcatttattcatatata 1709
>emb|Z66528.1|HVGLTP4X3 H.vulgare ltp4.3 gene Length = 1862 Score = 54.0 bits (27), Expect = 7e-05 Identities = 39/42 (92%), Gaps = 2/42 (4%) Strand = Plus / Minus Query: 46 tcccacatgaagataatat--gagagcatttattcatatata 85 ||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 1514 tcccacatggagataatatatgagagcatttattcatatata 1473
>emb|Z37115.1|HVLTPPB H.vulgare (clone pKG285) mRNA for lipid transfer protein precursor Length = 691 Score = 54.0 bits (27), Expect = 7e-05 Identities = 39/42 (92%), Gaps = 2/42 (4%) Strand = Plus / Minus Query: 46 tcccacatgaagataatat--gagagcatttattcatatata 85 ||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 512 tcccacatggagataatatatgagagcatttattcatatata 471
>emb|AJ852555.1| Triticum aestivum ltp9.2c gene for type 1 non specific lipid transfer protein precursor Length = 2122 Score = 52.0 bits (26), Expect = 3e-04 Identities = 26/26 (100%) Strand = Plus / Minus Query: 56 agataatatgagagcatttattcata 81 |||||||||||||||||||||||||| Sbjct: 1750 agataatatgagagcatttattcata 1725
>emb|AJ784901.1| Triticum aestivum mRNA for type 1 non-specific lipid transfer protein precursor (ltp9.2 gene) Length = 708 Score = 50.1 bits (25), Expect = 0.001 Identities = 25/25 (100%) Strand = Plus / Minus Query: 61 atatgagagcatttattcatatata 85 ||||||||||||||||||||||||| Sbjct: 540 atatgagagcatttattcatatata 516
>gb|AY566607.1| Triticum aestivum lipid transfer protein (LPT1) gene, complete cds Length = 3448 Score = 42.1 bits (21), Expect = 0.28 Identities = 33/37 (89%) Strand = Plus / Minus Query: 49 cacatgaagataatatgagagcatttattcatatata 85 |||||| |||| |||| ||||||||||||||| |||| Sbjct: 3339 cacatggagatcatatcagagcatttattcatgtata 3303
>gb|AF334185.1|AF334185 Triticum aestivum lipid transfer protein precursor (LTP2) mRNA, complete cds Length = 730 Score = 42.1 bits (21), Expect = 0.28 Identities = 33/37 (89%) Strand = Plus / Minus Query: 49 cacatgaagataatatgagagcatttattcatatata 85 |||||| |||| |||| ||||||||||||||| |||| Sbjct: 548 cacatggagatcatatcagagcatttattcatgtata 512
>gb|AF302788.1|AF302788 Triticum aestivum lipid transfer protein precursor (LTP1) mRNA, complete cds Length = 737 Score = 42.1 bits (21), Expect = 0.28 Identities = 33/37 (89%) Strand = Plus / Minus Query: 49 cacatgaagataatatgagagcatttattcatatata 85 |||||| |||| |||| ||||||||||||||| |||| Sbjct: 543 cacatggagatcatatcagagcatttattcatgtata 507
>emb|AJ852557.1| Triticum aestivum ltp9.5b gene for type 1 non specific lipid transfer protein precursor Length = 496 Score = 42.1 bits (21), Expect = 0.28 Identities = 33/37 (89%) Strand = Plus / Minus Query: 49 cacatgaagataatatgagagcatttattcatatata 85 |||||| |||| |||| ||||||||||||||| |||| Sbjct: 489 cacatggagatcatatcagagcatttattcatgtata 453
>gb|U18127.1|HVU18127 Hordeum vulgare phospholipid transfer protein precursor gene, complete cds Length = 573 Score = 42.1 bits (21), Expect = 0.28 Identities = 24/25 (96%) Strand = Plus / Minus Query: 61 atatgagagcatttattcatatata 85 |||||||| |||||||||||||||| Sbjct: 564 atatgagatcatttattcatatata 540
>gb|AC151778.1| Ornithorhynchus anatinus chromosome UNK clone OABb-238A1, complete sequence Length = 168798 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tgagagcatttattcatat 82 ||||||||||||||||||| Sbjct: 8610 tgagagcatttattcatat 8628
>gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, complete sequence Length = 212061 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 taatatgagagcatttatt 77 ||||||||||||||||||| Sbjct: 157545 taatatgagagcatttatt 157527
>gb|AC147836.2| Xenopus tropicalis clone CH216-26D18, complete sequence Length = 157688 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 taatatgagagcatttatt 77 ||||||||||||||||||| Sbjct: 140781 taatatgagagcatttatt 140763
>gb|AC022166.7| Homo sapiens chromosome 16 clone RP11-525K10, complete sequence Length = 163998 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 tatatatcccacatgaaga 58 ||||||||||||||||||| Sbjct: 13667 tatatatcccacatgaaga 13685
>emb|BX649250.6| Zebrafish DNA sequence from clone DKEY-53B2 in linkage group 20, complete sequence Length = 165729 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 gagagcatttattcatata 83 ||||||||||||||||||| Sbjct: 79657 gagagcatttattcatata 79639 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 591,272 Number of Sequences: 3902068 Number of extensions: 591272 Number of successful extensions: 41895 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41870 Number of HSP's gapped (non-prelim): 23 length of query: 99 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 78 effective length of database: 17,151,101,840 effective search space: 1337785943520 effective search space used: 1337785943520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)