ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5l11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY110545.1| Zea mays CL31325_1 mRNA sequence Length = 950 Score = 77.8 bits (39), Expect = 4e-11 Identities = 118/145 (81%) Strand = Plus / Plus Query: 314 cgtgcttcttccttgcgttttgtagaacagaatctgcaatcagatgtanagggcggcaac 373 |||||||||||| | ||||||| || |||||||||||| || || | | | || |||||| Sbjct: 419 cgtgcttcttccctccgttttgcagcacagaatctgcagtccgacgcagacggtggcaac 478 Query: 374 acttgatttacgataagccttgttgctggcgcaccatccttctttaaagatgcatgaaac 433 || ||||||| || |||||| ||| | ||||||||||||||||| || | |||||| Sbjct: 479 acctgatttatgacgagccttcttgtgtgtgcaccatccttctttaatgactcgtgaaac 538 Query: 434 cttgatgactcagnaatcgccatca 458 ||||||||||||| || ||||||| Sbjct: 539 cttgatgactcagtaactgccatca 563
>ref|XM_467761.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1221 Score = 48.1 bits (24), Expect = 0.031 Identities = 38/43 (88%) Strand = Plus / Minus Query: 452 gccatcaccgtangaatcgtcacaatgataaattcagttgatt 494 |||||||| || |||| |||||||| |||||||||||||||| Sbjct: 956 gccatcactgttggaatagtcacaattataaattcagttgatt 914
>dbj|AK099676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070D05, full insert sequence Length = 1220 Score = 48.1 bits (24), Expect = 0.031 Identities = 38/43 (88%) Strand = Plus / Minus Query: 452 gccatcaccgtangaatcgtcacaatgataaattcagttgatt 494 |||||||| || |||| |||||||| |||||||||||||||| Sbjct: 531 gccatcactgttggaatagtcacaattataaattcagttgatt 489
>gb|AC144928.17| Medicago truncatula clone mth2-8a18, complete sequence Length = 138948 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 242 acatcaacaagtggtgcttggat 264 ||||||||||||||||||||||| Sbjct: 68423 acatcaacaagtggtgcttggat 68401
>gb|AC133709.11| Medicago truncatula clone mth2-7b3, complete sequence Length = 138950 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 242 acatcaacaagtggtgcttggat 264 ||||||||||||||||||||||| Sbjct: 70526 acatcaacaagtggtgcttggat 70548
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 465 gaatcgtcacaatgataaattcagttgatt 494 |||| |||||||| |||||||||||||||| Sbjct: 31272031 gaatagtcacaattataaattcagttgatt 31272060
>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1734_E02 Length = 168566 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 465 gaatcgtcacaatgataaattcagttgatt 494 |||| |||||||| |||||||||||||||| Sbjct: 151874 gaatagtcacaattataaattcagttgatt 151903
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1118_G04 Length = 134464 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 465 gaatcgtcacaatgataaattcagttgatt 494 |||| |||||||| |||||||||||||||| Sbjct: 41899 gaatagtcacaattataaattcagttgatt 41928
>emb|AL135789.18| Human DNA sequence from clone RP11-412H14 on chromosome 9q32-33.3 Contains the 5' end of one variant of the AKAP2 (PALM2) gene for A kinase (PRKA) anchor protein 2 (paralemmin 2) and a CpG island, complete sequence Length = 133394 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 522 tggcaattctgcttcctgagc 542 ||||||||||||||||||||| Sbjct: 16613 tggcaattctgcttcctgagc 16593
>emb|BX548059.13| Zebrafish DNA sequence from clone DKEYP-80D11 in linkage group 12, complete sequence Length = 205581 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 atctgagggcaggggcgcctc 233 ||||||||||||||||||||| Sbjct: 98561 atctgagggcaggggcgcctc 98541
>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 Length = 1457619 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 489 ttgattgtggatcttgcataa 509 ||||||||||||||||||||| Sbjct: 1441183 ttgattgtggatcttgcataa 1441203
>ref|NM_125466.3| Arabidopsis thaliana ATP binding AT5G60730 mRNA, complete cds Length = 1419 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 417 ttaaagatgcatgaaaccttgatgactc 444 ||||||||||||| |||||||| ||||| Sbjct: 1049 ttaaagatgcatgtaaccttgaagactc 1022
>ref|XM_515290.1| PREDICTED: Pan troglodytes similar to development- and differentiation-enhancing factor 2; PYK2 C terminus-associated protein (LOC459014), mRNA Length = 2094 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 cgcgtgcttcttccttgcgt 331 |||||||||||||||||||| Sbjct: 1710 cgcgtgcttcttccttgcgt 1691
>gb|BT020179.1| Arabidopsis thaliana At5g60730 mRNA, complete cds Length = 1176 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 417 ttaaagatgcatgaaaccttgatgactc 444 ||||||||||||| |||||||| ||||| Sbjct: 946 ttaaagatgcatgtaaccttgaagactc 919
>gb|BT015736.1| Arabidopsis thaliana At5g60730 mRNA, complete cds Length = 1358 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 417 ttaaagatgcatgaaaccttgatgactc 444 ||||||||||||| |||||||| ||||| Sbjct: 1028 ttaaagatgcatgtaaccttgaagactc 1001
>gb|AC109239.8| Mus musculus chromosome 3, clone RP23-191N23, complete sequence Length = 187162 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 tcactgaagaatctgagggc 222 |||||||||||||||||||| Sbjct: 143100 tcactgaagaatctgagggc 143119
>gb|AC149297.1| Populus trichocarpa clone Pop1-015H07, complete sequence Length = 131790 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gttttgtagaacagaatctg 349 |||||||||||||||||||| Sbjct: 70960 gttttgtagaacagaatctg 70941
>emb|AL953901.15| Zebrafish DNA sequence from clone CH211-207G22 in linkage group 3, complete sequence Length = 196773 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 tagaacagaatctgcaatca 355 |||||||||||||||||||| Sbjct: 112687 tagaacagaatctgcaatca 112668
>emb|CR450718.10| Zebrafish DNA sequence from clone CH211-246I5 in linkage group 3, complete sequence Length = 151291 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 tagaacagaatctgcaatca 355 |||||||||||||||||||| Sbjct: 147778 tagaacagaatctgcaatca 147759
>gb|AC125348.3| Mus musculus BAC clone RP23-377H20 from chromosome 7, complete sequence Length = 188610 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 tttgtagaacagaatctgca 351 |||||||||||||||||||| Sbjct: 76607 tttgtagaacagaatctgca 76626
>emb|AL691514.5| Human DNA sequence from clone RP11-105M16 on chromosome 10, complete sequence Length = 154348 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tcaacaagtggtgcttggat 264 |||||||||||||||||||| Sbjct: 89177 tcaacaagtggtgcttggat 89158
>emb|AL445193.6| Human DNA sequence from clone RP11-393I23 on chromosome 1 Contains a novel gene, a pseudogene similar to part of WAP four-disulfide core domain 3 (WFDC3), a ribosomal protein S26 (RPS26) pseudogene and a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1) pseudogene, complete sequence Length = 68702 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 taacctccacatcaacaagt 253 |||||||||||||||||||| Sbjct: 47372 taacctccacatcaacaagt 47391
>emb|AL357336.11| Human DNA sequence from clone RP11-373N18 on chromosome 10 Contains a novel gene, the 3' end of a novel gene and a CpZG island, complete sequence Length = 54727 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 416 tttaaagatgcatgaaaccttgat 439 |||||| ||||||||||||||||| Sbjct: 29130 tttaaaaatgcatgaaaccttgat 29153
>emb|AL031073.1|HS142F18 Human DNA sequence from clone RP1-142F18 on chromosome Xq26.3-27.2 Contains the MAGEE1 gene for melanoma antigen, family E 1, a melanoma antigen, family E 1(MAGEE1) pseudogene, and a CpG island, complete sequence Length = 141672 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 479 ataaattcagttgattgtggatct 502 ||||||||||||||||||| |||| Sbjct: 140300 ataaattcagttgattgtgtatct 140323
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 aacagaatctgcaatcagat 358 |||||||||||||||||||| Sbjct: 1265915 aacagaatctgcaatcagat 1265896
>gb|BC063308.1| Homo sapiens development and differentiation enhancing factor 2, mRNA (cDNA clone MGC:71731 IMAGE:30345039), complete cds Length = 5544 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 cgcgtgcttcttccttgcgt 331 |||||||||||||||||||| Sbjct: 1916 cgcgtgcttcttccttgcgt 1897
>gb|AC159255.3| Mus musculus BAC clone RP24-89C11 from chromosome 3, complete sequence Length = 216011 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tcactgaagaatctgagggc 222 |||||||||||||||||||| Sbjct: 207889 tcactgaagaatctgagggc 207870
>ref|NM_003887.1| Homo sapiens development and differentiation enhancing factor 2 (DDEF2), mRNA Length = 5711 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 cgcgtgcttcttccttgcgt 331 |||||||||||||||||||| Sbjct: 1963 cgcgtgcttcttccttgcgt 1944
>gb|AF372979.1| Mus musculus P locus fat-associated ATPase (Atp10a) gene, exons 2 through 21 and partial cds Length = 129459 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tttgtagaacagaatctgca 351 |||||||||||||||||||| Sbjct: 113454 tttgtagaacagaatctgca 113435
>emb|BX829849.1|CNS0A02V Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB40ZF06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1400 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 417 ttaaagatgcatgaaaccttgatgactc 444 ||||||||||||| |||||||| ||||| Sbjct: 1048 ttaaagatgcatgtaaccttgaagactc 1021
>gb|AC080162.7| Homo sapiens BAC clone RP11-400L8 from 2, complete sequence Length = 171653 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 cgcgtgcttcttccttgcgt 331 |||||||||||||||||||| Sbjct: 21882 cgcgtgcttcttccttgcgt 21863
>gb|AC084604.1|CBRG43O03 Caenorhabditis briggsae cosmid G43O03, complete sequence Length = 39067 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gtgcttcttccttgcgtttt 334 |||||||||||||||||||| Sbjct: 6298 gtgcttcttccttgcgtttt 6317
>emb|BX005087.5| Zebrafish DNA sequence from clone CH211-91A7 in linkage group 10, complete sequence Length = 88649 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 atgataaattcagttgattg 495 |||||||||||||||||||| Sbjct: 74810 atgataaattcagttgattg 74791
>gb|AC100956.9| Mus musculus chromosome 7, clone RP23-74B10, complete sequence Length = 245367 Score = 40.1 bits (20), Expect = 7.7 Identities = 25/27 (92%) Strand = Plus / Minus Query: 112 ttataatgaantactccctctgtcaca 138 |||||||||| | |||||||||||||| Sbjct: 29466 ttataatgaaatgctccctctgtcaca 29440
>dbj|BS000013.1| Pan troglodytes chromosome 22 clone:RP43-009O02, map 22, complete sequences Length = 180661 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 481 aaattcagttgattgtggatcttg 504 |||| ||||||||||||||||||| Sbjct: 140677 aaatgcagttgattgtggatcttg 140654
>emb|BX004989.8| Zebrafish DNA sequence from clone CH211-167M4 in linkage group 6, complete sequence Length = 172968 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 atgataaattcagttgattg 495 |||||||||||||||||||| Sbjct: 137052 atgataaattcagttgattg 137071
>dbj|AB005246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUP24 Length = 77999 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 417 ttaaagatgcatgaaaccttgatgactc 444 ||||||||||||| |||||||| ||||| Sbjct: 68197 ttaaagatgcatgtaaccttgaagactc 68170
>dbj|AB007860.1| Homo sapiens KIAA0400 mRNA, partial cds Length = 5711 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 cgcgtgcttcttccttgcgt 331 |||||||||||||||||||| Sbjct: 1963 cgcgtgcttcttccttgcgt 1944
>gb|AC020647.9|AC020647 Homo sapiens 12 BAC RP11-922O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147720 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 tcagttgattgtggatcttg 504 |||||||||||||||||||| Sbjct: 138803 tcagttgattgtggatcttg 138784
>emb|AL928989.9| Mouse DNA sequence from clone RP24-125C11 on chromosome 11, complete sequence Length = 121556 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 cagatctacagcctgaacag 29 |||||||||||||||||||| Sbjct: 41156 cagatctacagcctgaacag 41137
>gb|AC162461.6| Mus musculus chromosome 5, clone RP23-265I19, complete sequence Length = 233632 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 tagaacagaatctgcaatca 355 |||||||||||||||||||| Sbjct: 111137 tagaacagaatctgcaatca 111118 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,601,850 Number of Sequences: 3902068 Number of extensions: 3601850 Number of successful extensions: 59722 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59627 Number of HSP's gapped (non-prelim): 94 length of query: 564 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 541 effective length of database: 17,143,297,704 effective search space: 9274524057864 effective search space used: 9274524057864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
