>TO401_ARATH (Q9LHE5) Mitochondrial import receptor subunit TOM40 homolog 1|
           (Translocase of outer membrane 40 kDa subunit homolog 1)
          Length = 308

 Score =  105 bits (262), Expect = 7e-23
 Identities = 52/71 (73%), Positives = 60/71 (84%)
 Frame = -2

Query: 512 FMYXPQCXRDVTSSVGYDYILRQCRXRGKIDSNGVVAAYLEXRLNMGVNFLLSAEIDHPK 333
           FMY     RDVT+SVGYDY+LRQ R RGKIDSNGV +A LE RL+MG+NFLLSAE+DH K
Sbjct: 238 FMYN-YFSRDVTASVGYDYMLRQARVRGKIDSNGVASALLEERLSMGLNFLLSAELDHKK 296

Query: 332 KNYKFGFGMTV 300
           K+YKFGFG+TV
Sbjct: 297 KDYKFGFGLTV 307

>TO402_ARATH (Q9SX55) Putative mitochondrial import receptor subunit TOM40|
           homolog 2 (Translocase of outer membrane 40 kDa subunit
           homolog 2)
          Length = 310

 Score = 95.5 bits (236), Expect = 7e-20
 Identities = 45/61 (73%), Positives = 53/61 (86%)
 Frame = -2

Query: 488 RDVTSSVGYDYILRQCRXRGKIDSNGVVAAYLEXRLNMGVNFLLSAEIDHPKKNYKFGFG 309
           RDVT+SVGYD I RQ R RGK+DSNGVVAAYLE +L +G+ FLLSAE+DH KK+YKFGFG
Sbjct: 247 RDVTASVGYDLITRQSRLRGKVDSNGVVAAYLEEQLPIGLRFLLSAEVDHVKKDYKFGFG 306

Query: 308 M 306
           +
Sbjct: 307 V 307

>TOM40_SCHPO (O13656) Probable mitochondrial import receptor subunit tom40|
           (Translocase of outer membrane 40 kDa subunit)
          Length = 344

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 25/59 (42%), Positives = 35/59 (59%)
 Frame = -2

Query: 476 SSVGYDYILRQCRXRGKIDSNGVVAAYLEXRLNMGVNFLLSAEIDHPKKNYKFGFGMTV 300
           +SVG  Y   Q   RG++DS G V  YLE RL   +    S+E+DHP +N K G G+++
Sbjct: 265 TSVGVKYEFAQSIYRGQVDSKGRVGVYLERRLAPAITLAFSSELDHPNRNAKVGLGLSL 323

>TOM40_YEAST (P23644) Mitochondrial import receptor subunit TOM40 (Mitochondrial|
           import-site-protein ISP42) (Translocase of outer
           membrane 40 kDa subunit)
          Length = 387

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 23/58 (39%), Positives = 35/58 (60%)
 Frame = -2

Query: 479 TSSVGYDYILRQCRXRGKIDSNGVVAAYLEXRLNMGVNFLLSAEIDHPKKNYKFGFGM 306
           ++++G  Y  RQ   RG +DSNG VA +LE ++   ++ L   EIDH K + K G G+
Sbjct: 300 STTIGAKYEYRQSVYRGTLDSNGKVACFLERKVLPTLSVLFCGEIDHFKNDTKIGCGL 357

>TOM40_XENLA (Q7ZTM6) Probable mitochondrial import receptor subunit TOM40|
           homolog (Translocase of outer membrane 40 kDa subunit
           homolog)
          Length = 336

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
 Frame = -2

Query: 488 RDVTSSVGYDYILRQCRX--RGKIDSNGVVAAYLEXRLN-MGVNFLLSAEIDHPKKNYKF 318
           +D + S+GY   L +     +G IDSN +V A LE +L  + +   + A ++H K  ++ 
Sbjct: 270 QDTSVSLGYQLDLPKANLLFKGSIDSNWIVGATLEKKLPPLPLTLAMGAFLNHKKNKFQC 329

Query: 317 GFGMTV 300
           GFG+T+
Sbjct: 330 GFGLTI 335

>TOM40_XENTR (Q6P825) Probable mitochondrial import receptor subunit TOM40|
           homolog (Translocase of outer membrane 40 kDa subunit
           homolog)
          Length = 336

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
 Frame = -2

Query: 488 RDVTSSVGYDYILRQCRX--RGKIDSNGVVAAYLEXRLN-MGVNFLLSAEIDHPKKNYKF 318
           +D + S GY   L +     +G +DSN +V A LE +L  + +   + A ++H K  ++ 
Sbjct: 270 QDTSVSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLAMGAFLNHKKNKFQC 329

Query: 317 GFGMTV 300
           GFG+T+
Sbjct: 330 GFGLTI 335

>MYO5B_RAT (P70569) Myosin-5B (Myosin Vb) (Myosin heavy chain myr 6)|
          Length = 1846

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = +2

Query: 266 LTVIAVSISTLLQSFQNQTCSSSLDGQSLQIEES*HPCSVSXPSMQQRHHLSQFCPLXGT 445
           LT++ V  S  +  F+       L    +Q E     CS+S     Q  HLS FC L G 
Sbjct: 312 LTLLGVRESHQISIFKIIASILHLGSVEIQAERDGDSCSIS----PQDEHLSNFCRLLGI 367

Query: 446 V*GYNHNQHWKSH 484
              ++  +HW  H
Sbjct: 368 --EHSQMEHWLCH 378

>RS7_THICU (O50564) 30S ribosomal protein S7|
          Length = 156

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
 Frame = +1

Query: 1   QKPIFLNLRVKK---------APTAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQV 153
           ++P F NL V K           +  E+I+   F+ +Q K     + + S+A    +P V
Sbjct: 14  REPKFGNLDVAKFMNVVMLSGKKSIAESIVYGAFEAIQNKTGKDPIEIFSQALSNVKPMV 73

Query: 154 HRKSLSA*GANLQVP 198
             KS    GAN QVP
Sbjct: 74  EVKSRRVGGANYQVP 88

>RS7_MYCHJ (Q4AAQ5) 30S ribosomal protein S7|
          Length = 156

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 43  TAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 198
           T  +NI+ + F+LV++K+    + +  +A +   P    +S    G N QVP
Sbjct: 37  TTAQNILYSAFKLVEEKLQKDALEVFRQAVKNVTPLTEVRSRRIGGTNYQVP 88

>RS7_MYCH7 (Q4A8T6) 30S ribosomal protein S7|
          Length = 156

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 43  TAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 198
           T  +NI+ + F+LV++K+    + +  +A +   P    +S    G N QVP
Sbjct: 37  TTAQNILYSAFKLVEEKLQKDALEVFRQAVKNVTPLTEVRSRRIGGTNYQVP 88

>RS7_MYCH2 (Q601W7) 30S ribosomal protein S7|
          Length = 156

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 43  TAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 198
           T  +NI+ + F+LV++K+    + +  +A +   P    +S    G N QVP
Sbjct: 37  TTAQNILYSAFKLVEEKLQKDALEVFRQAVKNVTPLTEVRSRRIGGTNYQVP 88

>RS7_UREPA (Q9PPW6) 30S ribosomal protein S7|
          Length = 155

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 52  ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 198
           ++II + F++V+QK     + + +KA +   P +  K     G+N QVP
Sbjct: 39  QSIIYSAFEIVEQKTGKPALEVFNKAIDNVMPIIELKVRRVGGSNFQVP 87

>RS7_MYCGA (Q7NAV2) 30S ribosomal protein S7|
          Length = 155

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 52  ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 198
           + I+  +F L+ QK     + + +KA E   P++  K     GAN QVP
Sbjct: 39  QKILYGSFDLIAQKTQKDPLEIFNKAVENIMPRLELKVRRIAGANYQVP 87

>PRS8_SCHPO (P41836) 26S protease regulatory subunit 8 homolog (Protein let1)|
          Length = 403

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 49  KENIITTTFQLVQ---QKIMDAQMPMLSKAAEMRQPQVHRKSLSA 174
           K N++ +   +VQ   QKI DA++ +L K   +R+ +  R  L+A
Sbjct: 6   KTNVLQSNENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNA 50

>RS7_MYCS5 (Q4A702) 30S ribosomal protein S7|
          Length = 156

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 52  ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 198
           ++I+ + F LV++K     M + ++A E   PQ+  ++    G N QVP
Sbjct: 40  QDILYSAFDLVKEKTKKDPMQVFTQAVENITPQLEIRTRRIGGTNYQVP 88

>RS7_MESFL (Q6F0J3) 30S ribosomal protein S7|
          Length = 155

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 52  ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 198
           + II   F ++++K  +  + + +KA E  +P +  K     GAN QVP
Sbjct: 39  QTIIYDAFDIIKEKTGEEPIEIFNKAIENIKPHLELKVRRIGGANYQVP 87

>RS7_TREDE (Q73NV4) 30S ribosomal protein S7|
          Length = 156

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +1

Query: 31  KKAPTAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 198
           KK+ T K  I+  +F  +++K  +  + + SKA +  +P V  KS    GA  QVP
Sbjct: 35  KKSITTK--IMYDSFDKIKEKTGEEPLAVFSKALDNVKPVVEVKSRRVGGATYQVP 88

>RS7_MYCMS (Q8VMU1) 30S ribosomal protein S7|
          Length = 155

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 52  ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 198
           ++II   F ++++K     + + +KA E  +P +  K     GAN QVP
Sbjct: 39  QSIIYDAFNIIKEKTNKEPIEVFNKAIENIKPHLELKVRRIGGANYQVP 87

>RS7_TREPA (O83272) 30S ribosomal protein S7|
          Length = 156

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 58  IITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 198
           I+    + +QQ+  +  +P+ +KA E  +P V  KS    G+  QVP
Sbjct: 42  IMYDCLERIQQRTGEEPLPVFTKALENVKPAVEVKSRRVGGSTYQVP 88

>RS7_RALEJ (Q46WD9) 30S ribosomal protein S7|
          Length = 156

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 13  FLN-LRVKKAPTAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANL 189
           F+N L +    +  E I+   F  +++K   A + + S A    +P V  KS    GAN 
Sbjct: 26  FMNVLMLDGKKSVAERIVYGAFDQIEKKAGKAPIEVFSVAINNVKPVVEVKSRRVGGANY 85

Query: 190 QVP 198
           QVP
Sbjct: 86  QVP 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,392,451
Number of Sequences: 219361
Number of extensions: 1258195
Number of successful extensions: 2826
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2826
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)