ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-r... 66 2e-08
2gb|AC005598.6|AC005598 Homo sapiens chromosome 4 clone C0024K08 ... 38 4.9
3gb|AC127242.3| Mus musculus BAC clone RP24-404P19 from 12, compl... 38 4.9
4gb|AC134601.4| Mus musculus BAC clone RP23-242M10 from 12, compl... 38 4.9

>gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-related protein
           (wrsi5-1) mRNA, complete cds
          Length = 608

 Score = 65.9 bits (33), Expect = 2e-08
 Identities = 76/90 (84%), Gaps = 2/90 (2%)
 Strand = Plus / Minus

                                                                       
Query: 15  tacatattgttggccgtatgacgcggcccacacacaagcatagcaacacgatgactgctc 74
           |||||||||||||||||||  | || |||||| | ||||||||   | | ||||||||||
Sbjct: 477 tacatattgttggccgtatagcacgacccacagagaagcatagg--cgccatgactgctc 420

                                         
Query: 75  atctcatctgngctttattctangcggcac 104
           |||||||||| |||||||| || |||||||
Sbjct: 419 atctcatctgagctttattttaggcggcac 390



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>gb|AC005598.6|AC005598 Homo sapiens chromosome 4 clone C0024K08 map 4p16, complete sequence
          Length = 166743

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    cggcccacacacaagcata 56
             |||||||||||||||||||
Sbjct: 40264 cggcccacacacaagcata 40246



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>gb|AC127242.3| Mus musculus BAC clone RP24-404P19 from 12, complete sequence
          Length = 171990

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 44     acacacaagcatagcaaca 62
              |||||||||||||||||||
Sbjct: 122060 acacacaagcatagcaaca 122078



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>gb|AC134601.4| Mus musculus BAC clone RP23-242M10 from 12, complete sequence
          Length = 171767

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 44     acacacaagcatagcaaca 62
              |||||||||||||||||||
Sbjct: 123981 acacacaagcatagcaaca 123963


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 494,509
Number of Sequences: 3902068
Number of extensions: 494509
Number of successful extensions: 27322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27316
Number of HSP's gapped (non-prelim): 6
length of query: 108
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 87
effective length of database: 17,151,101,840
effective search space: 1492145860080
effective search space used: 1492145860080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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