ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5l05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190983.1| Oryza sativa (japonica cultivar-group), predic... 103 6e-19
2dbj|AK111939.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 6e-19
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
4dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
5gb|AY104310.1| Zea mays PCO130346 mRNA sequence 60 8e-06
6gb|U10079.1|ZMU10079 Zea mays B73 cyclin IaZm mRNA, partial cds 60 8e-06
7gb|AC136452.4| Mus musculus BAC clone RP24-274L23 from chromosom... 44 0.48
8gb|AC173998.3| Mus musculus BAC clone RP24-446E18 from chromosom... 44 0.48
9dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.48
11emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.48
12gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 42 1.9
13gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 42 1.9
14gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 42 1.9
15gb|AC133574.15| Mus musculus strain C57BL/6J clone rp23-35b9, co... 42 1.9
16dbj|AK109955.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
17emb|AL135928.6| Human DNA sequence from clone RP4-534P7 on chrom... 42 1.9
18gb|BC108424.1| Mus musculus cDNA clone IMAGE:6850499, containing... 40 7.4
19gb|AC123656.9| Mus musculus chromosome 15, clone RP23-188M21, co... 40 7.4
20gb|BC059879.1| Mus musculus expressed sequence BM948371, mRNA (c... 40 7.4
21gb|BC080282.1| Mus musculus expressed sequence BM948371, mRNA (c... 40 7.4
22gb|AC089994.2| Felis catus clone RP86-181L4, complete sequence 40 7.4
23ref|XM_981450.1| PREDICTED: Mus musculus expressed sequence BM94... 40 7.4
24ref|XM_914385.2| PREDICTED: Mus musculus expressed sequence BM94... 40 7.4
25ref|XM_354696.5| PREDICTED: Mus musculus expressed sequence BM94... 40 7.4
26gb|AC078855.13| Homo sapiens 3 BAC RP11-558M24 (Roswell Park Can... 40 7.4
27gb|AC073230.8| Homo sapiens BAC clone RP11-682N22 from 7, comple... 40 7.4
28emb|AL607043.12| Human DNA sequence from clone RP11-309P22 on ch... 40 7.4
29emb|AL512304.10| Human DNA sequence from clone RP11-460D17 on ch... 40 7.4
30ref|XM_503942.1| Yarrowia lipolytica CLIB122, YALI0E14443g predi... 40 7.4
31emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransgl... 40 7.4
32emb|AL596086.9| Mouse DNA sequence from clone RP23-168C20 on chr... 40 7.4
33gb|AC016042.8| Homo sapiens chromosome 10 clone RP11-87P3, compl... 40 7.4
34gb|AC156984.9| Mus musculus chromosome 5, clone RP23-418H8, comp... 40 7.4
35dbj|AK158915.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 40 7.4
36ref|XM_626567.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 7.4
37dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
38gb|AC097457.2| Homo sapiens BAC clone RP11-3J1 from 4, complete ... 40 7.4
39gb|AC018366.39| Mus musculus strain 129/SvJ chromosome 5 clone m... 40 7.4
40dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.4
41dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
42dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
43dbj|AK072342.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
44dbj|AK067815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
45emb|CT485616.11| Mouse DNA sequence from clone RP23-14H16 on chr... 40 7.4
46gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome 40 7.4
47gb|AC147262.4| Mus musculus BAC clone RP24-211P15 from 3, comple... 40 7.4
48gb|AC140111.3| Mus musculus BAC clone RP23-16F4 from 12, complet... 40 7.4
49emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 40 7.4
50gb|AC079445.28| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 7.4 
>ref|NM_190983.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1350

 Score =  103 bits (52), Expect = 6e-19
 Identities = 228/287 (79%)
 Strand = Plus / Minus

                                                                        
Query: 220  actcctccgagcttctcgctggagtacttcttgtagacgaccttcagcttgctgtcaggc 279
            |||||||| |||| ||| ||||| ||||||||||| || ||| |||||||||| ||||| 
Sbjct: 1313 actcctccaagctgctcactggaatacttcttgtacacaaccctcagcttgctctcaggg 1254

                                                                        
Query: 280  gcggtcgagtgcgaggccaccaggatcttggcggcatccatcagctgcgcttcagtgaag 339
            || || ||||||||||  || || | ||| || |  ||||  ||||| |  || || || 
Sbjct: 1253 gcagtagagtgcgaggtaacaagaagctttgcagagtccaatagctgtgactcggtaaat 1194

                                                                        
Query: 340  ccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcctggcg 399
            |||||||||||| | || ||||| ||||| || ||| |||| || |||||||||||||| 
Sbjct: 1193 ccagtgtggtgcttgagagtgtcagtccatagagggctcttcttcagggtgagcctggct 1134

                                                                        
Query: 400  gcgtagacagcagcggcggcgaccatggacggcttggactgcaccagcccgtactgcang 459
            || |||||||||| ||| || ||| |||| |||  |||   |||||||||||||||||  
Sbjct: 1133 gcatagacagcagaggcagcaaccttggaaggcagggatgccaccagcccgtactgcatc 1074

                                                           
Query: 460  agcgccagctccgcgaagaagaagacggtgttctccatctccttgtc 506
            || ||||  || |||||||||||| |  ||| |||||||||||||||
Sbjct: 1073 agtgccaattcagcgaagaagaaggccatgtgctccatctccttgtc 1027
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>dbj|AK111939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G01, full
           insert sequence
          Length = 1251

 Score =  103 bits (52), Expect = 6e-19
 Identities = 228/287 (79%)
 Strand = Plus / Minus

                                                                       
Query: 220 actcctccgagcttctcgctggagtacttcttgtagacgaccttcagcttgctgtcaggc 279
           |||||||| |||| ||| ||||| ||||||||||| || ||| |||||||||| ||||| 
Sbjct: 951 actcctccaagctgctcactggaatacttcttgtacacaaccctcagcttgctctcaggg 892

                                                                       
Query: 280 gcggtcgagtgcgaggccaccaggatcttggcggcatccatcagctgcgcttcagtgaag 339
           || || ||||||||||  || || | ||| || |  ||||  ||||| |  || || || 
Sbjct: 891 gcagtagagtgcgaggtaacaagaagctttgcagagtccaatagctgtgactcggtaaat 832

                                                                       
Query: 340 ccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcctggcg 399
           |||||||||||| | || ||||| ||||| || ||| |||| || |||||||||||||| 
Sbjct: 831 ccagtgtggtgcttgagagtgtcagtccatagagggctcttcttcagggtgagcctggct 772

                                                                       
Query: 400 gcgtagacagcagcggcggcgaccatggacggcttggactgcaccagcccgtactgcang 459
           || |||||||||| ||| || ||| |||| |||  |||   |||||||||||||||||  
Sbjct: 771 gcatagacagcagaggcagcaaccttggaaggcagggatgccaccagcccgtactgcatc 712

                                                          
Query: 460 agcgccagctccgcgaagaagaagacggtgttctccatctccttgtc 506
           || ||||  || |||||||||||| |  ||| |||||||||||||||
Sbjct: 711 agtgccaattcagcgaagaagaaggccatgtgctccatctccttgtc 665
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 117/144 (81%)
 Strand = Plus / Plus

                                                                            
Query: 340      ccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcctggcg 399
                |||||||||||| | || ||||| ||||| || ||| |||| || |||||||||||||| 
Sbjct: 34143233 ccagtgtggtgcttgagagtgtcagtccatagagggctcttcttcagggtgagcctggct 34143292

                                                                            
Query: 400      gcgtagacagcagcggcggcgaccatggacggcttggactgcaccagcccgtactgcang 459
                || |||||||||| ||| || ||| |||| |||  |||   |||||||||||||||||  
Sbjct: 34143293 gcatagacagcagaggcagcaaccttggaaggcagggatgccaccagcccgtactgcatc 34143352

                                        
Query: 460      agcgccagctccgcgaagaagaag 483
                || ||||  || ||||||||||||
Sbjct: 34143353 agtgccaattcagcgaagaagaag 34143376



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                            
Query: 220      actcctccgagcttctcgctggagtacttcttgtagacgaccttcagcttgctgtcaggc 279
                |||||||| |||| ||| ||||| ||||||||||| || ||| |||||||||| ||||| 
Sbjct: 34143016 actcctccaagctgctcactggaatacttcttgtacacaaccctcagcttgctctcaggg 34143075

                                
Query: 280      gcggtcgagtgcgagg 295
                || || ||||||||||
Sbjct: 34143076 gcagtagagtgcgagg 34143091
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>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0034E02
          Length = 165497

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 117/144 (81%)
 Strand = Plus / Plus

                                                                          
Query: 340    ccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcctggcg 399
              |||||||||||| | || ||||| ||||| || ||| |||| || |||||||||||||| 
Sbjct: 139711 ccagtgtggtgcttgagagtgtcagtccatagagggctcttcttcagggtgagcctggct 139770

                                                                          
Query: 400    gcgtagacagcagcggcggcgaccatggacggcttggactgcaccagcccgtactgcang 459
              || |||||||||| ||| || ||| |||| |||  |||   |||||||||||||||||  
Sbjct: 139771 gcatagacagcagaggcagcaaccttggaaggcagggatgccaccagcccgtactgcatc 139830

                                      
Query: 460    agcgccagctccgcgaagaagaag 483
              || ||||  || ||||||||||||
Sbjct: 139831 agtgccaattcagcgaagaagaag 139854



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                          
Query: 220    actcctccgagcttctcgctggagtacttcttgtagacgaccttcagcttgctgtcaggc 279
              |||||||| |||| ||| ||||| ||||||||||| || ||| |||||||||| ||||| 
Sbjct: 139494 actcctccaagctgctcactggaatacttcttgtacacaaccctcagcttgctctcaggg 139553

                              
Query: 280    gcggtcgagtgcgagg 295
              || || ||||||||||
Sbjct: 139554 gcagtagagtgcgagg 139569
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>gb|AY104310.1| Zea mays PCO130346 mRNA sequence
          Length = 1970

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 335  tgaagccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcc 394
            ||||||| ||||||||| | |||||||||||||| || || | | | ||||| |||||||
Sbjct: 1461 tgaagcccgtgtggtgcttgagggtgtcggtccagaggggagccctcttgagagtgagcc 1402

                          
Query: 395  tggcggcgtagaca 408
            |||| |||||||||
Sbjct: 1401 tggctgcgtagaca 1388



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 72/84 (85%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                        
Query: 208  gggcgcagcgcgactcctccgagcttctcgctggagtacttcttgtagac-gaccttcag 266
            ||||| |||||||| ||||||| || ||| ||||| ||||||||||| || |||| ||||
Sbjct: 1594 gggcgaagcgcgacacctccgaactgctcactggaatacttcttgtatacagacc-tcag 1536

                                    
Query: 267  cttgctgtcaggcgcggtcgagtg 290
            |||||||||||  |||| ||||||
Sbjct: 1535 cttgctgtcagcggcggacgagtg 1512



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 448  ccgtactgcangagcgccagctccgcgaagaagaagacggtgttctccatctc 500
            ||||||||||  |||||||| || ||||||||||||||  | |||||||||||
Sbjct: 1348 ccgtactgcatcagcgccagttcagcgaagaagaagaccatattctccatctc 1296
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>gb|U10079.1|ZMU10079 Zea mays B73 cyclin IaZm mRNA, partial cds
          Length = 1497

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 335  tgaagccagtgtggtgcctcagggtgtcggtccacagcggggtcttgttgagggtgagcc 394
            ||||||| ||||||||| | |||||||||||||| || || | | | ||||| |||||||
Sbjct: 1077 tgaagcccgtgtggtgcttgagggtgtcggtccagaggggagccctcttgagagtgagcc 1018

                          
Query: 395  tggcggcgtagaca 408
            |||| |||||||||
Sbjct: 1017 tggctgcgtagaca 1004



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 448 ccgtactgcangagcgccagctccgcgaagaagaagacggtgttctccatctc 500
           ||||||||||  |||||||| || ||||||||||||||  | |||||||||||
Sbjct: 964 ccgtactgcatcagcgccagttcagcgaagaagaagaccatattctccatctc 912



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 234  ctcgctggagtacttcttgtagacgaccttcagcttgctgtcag 277
            ||||||||| ||||||||||| ||  || |||||||||||||||
Sbjct: 1187 ctcgctggaatacttcttgtatacagccctcagcttgctgtcag 1144
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>gb|AC136452.4| Mus musculus BAC clone RP24-274L23 from chromosome Y, complete sequence
          Length = 155057

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 490   ttctccatctccttgtcgttct 511
             ||||||||||||||||||||||
Sbjct: 53159 ttctccatctccttgtcgttct 53138
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>gb|AC173998.3| Mus musculus BAC clone RP24-446E18 from chromosome y, complete sequence
          Length = 142829

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 490   ttctccatctccttgtcgttct 511
             ||||||||||||||||||||||
Sbjct: 50414 ttctccatctccttgtcgttct 50435
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 412      gcggcggcgaccatggacggct 433
                ||||||||||||||||||||||
Sbjct: 23462084 gcggcggcgaccatggacggct 23462063
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 412      gcggcggcgaccatggacggct 433
                ||||||||||||||||||||||
Sbjct: 23390275 gcggcggcgaccatggacggct 23390254
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>emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 162261

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 412   gcggcggcgaccatggacggct 433
             ||||||||||||||||||||||
Sbjct: 40075 gcggcggcgaccatggacggct 40096
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>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
              22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 149    gtcttgcaaaccaaaacaacaaaca 173
              |||||||||| ||||||||||||||
Sbjct: 109437 gtcttgcaaaacaaaacaacaaaca 109461
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>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 149   gtcttgcaaaccaaaacaacaaaca 173
             |||||||||| ||||||||||||||
Sbjct: 96027 gtcttgcaaaacaaaacaacaaaca 96051
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>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 149   gtcttgcaaaccaaaacaacaaaca 173
             |||||||||| ||||||||||||||
Sbjct: 97741 gtcttgcaaaacaaaacaacaaaca 97765
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>gb|AC133574.15| Mus musculus strain C57BL/6J clone rp23-35b9, complete sequence
          Length = 168432

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 149   gtcttgcaaaccaaaacaacaaaca 173
             |||||||||| ||||||||||||||
Sbjct: 27956 gtcttgcaaaacaaaacaacaaaca 27980
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>dbj|AK109955.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-A11, full
           insert sequence
          Length = 3826

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 407 cagcagcggcggcgaccatgg 427
           |||||||||||||||||||||
Sbjct: 74  cagcagcggcggcgaccatgg 54
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>emb|AL135928.6| Human DNA sequence from clone RP4-534P7 on chromosome 1 Contains the
            5' end of a gene for a beta
            1,3-N-acetylgalactosaminyltransferase-II (MGC39558)
            protein and a mitochondrial cytochrome b (MTCYB) pocessed
            pseudogene, complete sequence
          Length = 82939

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 90   tgcgaccaaacaaacaaacac 110
            |||||||||||||||||||||
Sbjct: 7726 tgcgaccaaacaaacaaacac 7746
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>gb|BC108424.1| Mus musculus cDNA clone IMAGE:6850499, containing frame-shift errors
          Length = 2627

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 529  gacgcggccttggcgaagcg 548
            ||||||||||||||||||||
Sbjct: 1058 gacgcggccttggcgaagcg 1039
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>gb|AC123656.9| Mus musculus chromosome 15, clone RP23-188M21, complete sequence
          Length = 200922

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 159   ccaaaacaacaaacagacgacaga 182
             ||||||||||||||||| ||||||
Sbjct: 82236 ccaaaacaacaaacagaagacaga 82213
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>gb|BC059879.1| Mus musculus expressed sequence BM948371, mRNA (cDNA clone
            IMAGE:6812166), with apparent retained intron
          Length = 2756

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 529  gacgcggccttggcgaagcg 548
            ||||||||||||||||||||
Sbjct: 1172 gacgcggccttggcgaagcg 1153
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>gb|BC080282.1| Mus musculus expressed sequence BM948371, mRNA (cDNA clone
           IMAGE:5690720), partial cds
          Length = 2537

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 529 gacgcggccttggcgaagcg 548
           ||||||||||||||||||||
Sbjct: 958 gacgcggccttggcgaagcg 939
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>gb|AC089994.2| Felis catus clone RP86-181L4, complete sequence
          Length = 142512

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   gaaatgtcagacaagccttc 133
             ||||||||||||||||||||
Sbjct: 86579 gaaatgtcagacaagccttc 86560
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>ref|XM_981450.1| PREDICTED: Mus musculus expressed sequence BM948371 (BM948371), mRNA
          Length = 3343

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 529  gacgcggccttggcgaagcg 548
            ||||||||||||||||||||
Sbjct: 1796 gacgcggccttggcgaagcg 1777
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>ref|XM_914385.2| PREDICTED: Mus musculus expressed sequence BM948371, transcript
            variant 3 (BM948371), mRNA
          Length = 3358

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 529  gacgcggccttggcgaagcg 548
            ||||||||||||||||||||
Sbjct: 1796 gacgcggccttggcgaagcg 1777
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>ref|XM_354696.5| PREDICTED: Mus musculus expressed sequence BM948371, transcript
            variant 1 (BM948371), mRNA
          Length = 3277

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 529  gacgcggccttggcgaagcg 548
            ||||||||||||||||||||
Sbjct: 1730 gacgcggccttggcgaagcg 1711
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>gb|AC078855.13| Homo sapiens 3 BAC RP11-558M24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 173849

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 148   agtcttgcaaaccaaaacaacaaa 171
             |||| |||||||||||||||||||
Sbjct: 36346 agtcctgcaaaccaaaacaacaaa 36323
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>gb|AC073230.8| Homo sapiens BAC clone RP11-682N22 from 7, complete sequence
          Length = 183523

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   caaaccaaaacaacaaacag 174
             ||||||||||||||||||||
Sbjct: 21720 caaaccaaaacaacaaacag 21739
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>emb|AL607043.12| Human DNA sequence from clone RP11-309P22 on chromosome 10 Contains a
             ribosomal protein S6 (RPS6) pseudogene, complete sequence
          Length = 169841

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 508   ttcttgtggtctgtggagga 527
             ||||||||||||||||||||
Sbjct: 69830 ttcttgtggtctgtggagga 69849
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>emb|AL512304.10| Human DNA sequence from clone RP11-460D17 on chromosome 10 Contains
             part of a novel gene (KIAA0534), complete sequence
          Length = 70637

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    tcagataatatgcctgactt 90
             ||||||||||||||||||||
Sbjct: 42276 tcagataatatgcctgactt 42257
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>ref|XM_503942.1| Yarrowia lipolytica CLIB122, YALI0E14443g predicted mRNA
          Length = 1329

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 462 cgccagctccgcgaagaagaagac 485
           ||||||| ||||||||||||||||
Sbjct: 237 cgccagcaccgcgaagaagaagac 214
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>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
          Length = 1110

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 agcagcggcggcgaccatgg 427
           ||||||||||||||||||||
Sbjct: 10  agcagcggcggcgaccatgg 29
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>emb|AL596086.9| Mouse DNA sequence from clone RP23-168C20 on chromosome 11 Contains the
             3' end of the Tex14 gene for testis expressed gene 14,
             complete sequence
          Length = 200501

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   caaaccaaaacaacaaacag 174
             ||||||||||||||||||||
Sbjct: 12824 caaaccaaaacaacaaacag 12805
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>gb|AC016042.8| Homo sapiens chromosome 10 clone RP11-87P3, complete sequence
          Length = 184689

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    tcagataatatgcctgactt 90
             ||||||||||||||||||||
Sbjct: 10900 tcagataatatgcctgactt 10919
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>gb|AC156984.9| Mus musculus chromosome 5, clone RP23-418H8, complete sequence
          Length = 171080

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   ccaagtcttgcaaaccaaaa 164
             ||||||||||||||||||||
Sbjct: 41589 ccaagtcttgcaaaccaaaa 41608
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>dbj|AK158915.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library,
            clone:K530006G07 product:Brain-enriched guanylate
            kinase-associated protein 1 homolog [Rattus norvegicus],
            full insert sequence
          Length = 2709

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 529  gacgcggccttggcgaagcg 548
            ||||||||||||||||||||
Sbjct: 1167 gacgcggccttggcgaagcg 1148
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>ref|XM_626567.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd2_3830),
            partial mRNA
          Length = 1806

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 43   caaatcctaataatagttta 62
            ||||||||||||||||||||
Sbjct: 1472 caaatcctaataatagttta 1491
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                           
Query: 441      caccagcccgtactgcangagcgccagctccgcgaagaagaag 483
                |||||||||||||||||  || ||||  || ||||||||||||
Sbjct: 34171451 caccagcccgtactgcatcagtgccaattcagcgaagaagaag 34171493



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                           
Query: 441      caccagcccgtactgcangagcgccagctccgcgaagaagaag 483
                |||||||||||||||||  || ||||  || ||||||||||||
Sbjct: 34141734 caccagcccgtactgcatcagtgccaattcagcgaagaagaag 34141776



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                           
Query: 441      caccagcccgtactgcangagcgccagctccgcgaagaagaag 483
                |||||||||||||||||  || ||||  || ||||||||||||
Sbjct: 34117182 caccagcccgtactgcatcagtgccaattcagcgaagaagaag 34117224
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>gb|AC097457.2| Homo sapiens BAC clone RP11-3J1 from 4, complete sequence
          Length = 120836

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   gcaaaccaaaacaacaaaca 173
             ||||||||||||||||||||
Sbjct: 19721 gcaaaccaaaacaacaaaca 19702
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>gb|AC018366.39| Mus musculus strain 129/SvJ chromosome 5 clone mgs1-458e5, complete
              sequence
          Length = 126143

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    ccaagtcttgcaaaccaaaa 164
              ||||||||||||||||||||
Sbjct: 119882 ccaagtcttgcaaaccaaaa 119863
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 400     gcgtagacagcagcggcggc 419
               ||||||||||||||||||||
Sbjct: 5215919 gcgtagacagcagcggcggc 5215938
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>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0032L17
          Length = 165808

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                        
Query: 441   caccagcccgtactgcangagcgccagctccgcgaagaagaag 483
             |||||||||||||||||  || ||||  || ||||||||||||
Sbjct: 98965 caccagcccgtactgcatcagtgccaattcagcgaagaagaag 99007



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                        
Query: 441   caccagcccgtactgcangagcgccagctccgcgaagaagaag 483
             |||||||||||||||||  || ||||  || ||||||||||||
Sbjct: 69248 caccagcccgtactgcatcagtgccaattcagcgaagaagaag 69290



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                        
Query: 441   caccagcccgtactgcangagcgccagctccgcgaagaagaag 483
             |||||||||||||||||  || ||||  || ||||||||||||
Sbjct: 44696 caccagcccgtactgcatcagtgccaattcagcgaagaagaag 44738
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>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0689B12
          Length = 154745

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                       
Query: 441  caccagcccgtactgcangagcgccagctccgcgaagaagaag 483
            |||||||||||||||||  || ||||  || ||||||||||||
Sbjct: 6724 caccagcccgtactgcatcagtgccaattcagcgaagaagaag 6766
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>dbj|AK072342.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052N08, full
            insert sequence
          Length = 3232

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                       
Query: 441  caccagcccgtactgcangagcgccagctccgcgaagaagaag 483
            |||||||||||||||||  || ||||  || ||||||||||||
Sbjct: 1051 caccagcccgtactgcatcagtgccaattcagcgaagaagaag 1009
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>dbj|AK067815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118P06, full
            insert sequence
          Length = 3020

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                       
Query: 441  caccagcccgtactgcangagcgccagctccgcgaagaagaag 483
            |||||||||||||||||  || ||||  || ||||||||||||
Sbjct: 1036 caccagcccgtactgcatcagtgccaattcagcgaagaagaag 994
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>emb|CT485616.11| Mouse DNA sequence from clone RP23-14H16 on chromosome 17, complete
             sequence
          Length = 163243

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   gcaaaccaaaacaacaaaca 173
             ||||||||||||||||||||
Sbjct: 43727 gcaaaccaaaacaacaaaca 43746
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>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome
          Length = 892758

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     gcaaatcctaataatagttt 61
              ||||||||||||||||||||
Sbjct: 822042 gcaaatcctaataatagttt 822023
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>gb|AC147262.4| Mus musculus BAC clone RP24-211P15 from 3, complete sequence
          Length = 168562

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   tgcaaaccaaaacaacaaac 172
             ||||||||||||||||||||
Sbjct: 21601 tgcaaaccaaaacaacaaac 21582
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>gb|AC140111.3| Mus musculus BAC clone RP23-16F4 from 12, complete sequence
          Length = 175729

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 529    gacgcggccttggcgaagcg 548
              ||||||||||||||||||||
Sbjct: 111836 gacgcggccttggcgaagcg 111855
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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 462     cgccagctccgcgaagaagaagac 485
               ||||||| ||||||||||||||||
Sbjct: 1730118 cgccagcaccgcgaagaagaagac 1730141
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>gb|AC079445.28| Mus musculus strain C57BL/6J chromosome 5 clone rp23-403l21, complete
              sequence
          Length = 189517

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    ccaagtcttgcaaaccaaaa 164
              ||||||||||||||||||||
Sbjct: 121329 ccaagtcttgcaaaccaaaa 121348


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,094,978
Number of Sequences: 3902068
Number of extensions: 7094978
Number of successful extensions: 539511
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 538869
Number of HSP's gapped (non-prelim): 637
length of query: 549
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 526
effective length of database: 17,143,297,704
effective search space: 9017374592304
effective search space used: 9017374592304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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