ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6a04 |
|---|---|
| Clone Library Name | barley_pub |
>OGG1_DROME (Q9V3I8) N-glycosylase/DNA lyase (dOgg1) [Includes: 8-oxoguanine| DNA glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) (AP lyase)] Length = 343 Score = 53.9 bits (128), Expect = 4e-07 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Frame = -3 Query: 623 QAIPVDTHVWKVATKYMLPELAG-KSLTPKLSIVVADAFVTRFGEYAGWAQNVLFIGQL 450 +++PVD H++++A Y LP L G K++T K+ V+ F G+YAGWAQ +LF L Sbjct: 264 ESVPVDIHIYRIAQNYYLPHLTGQKNVTKKIYEEVSKHFQKLHGKYAGWAQAILFSADL 322
>OGG1_RAT (O70249) N-glycosylase/DNA lyase [Includes: 8-oxoguanine DNA| glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) (AP lyase)] Length = 345 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Frame = -3 Query: 635 LDKNQAIPVDTHVWKVATK---YMLPELAGKSLTPKLSIVVADAFVTRFGEYAGWAQNVL 465 LDK QA+PVD HVW++A + + K +P + + + F +G YAGWAQ VL Sbjct: 259 LDKPQAVPVDIHVWQIAHRDYGWQPKTSQTKGPSPLANKELGNFFRNLWGPYAGWAQAVL 318 Query: 464 FIGQLPAKKL 435 F L + L Sbjct: 319 FSADLRQQNL 328
>OGG1_MOUSE (O08760) N-glycosylase/DNA lyase [Includes: 8-oxoguanine DNA| glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) (AP lyase)] Length = 345 Score = 47.8 bits (112), Expect = 3e-05 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Frame = -3 Query: 635 LDKNQAIPVDTHVWKVATK---YMLPELAGKSLTPKLSIVVADAFVTRFGEYAGWAQNVL 465 LDK QA+PVD HVW++A + + K +P + + + F +G YAGWAQ VL Sbjct: 259 LDKPQAVPVDVHVWQIAHRDYGWHPKTSQAKGPSPLANKELGNFFRNLWGPYAGWAQAVL 318 Query: 464 FIGQL 450 F L Sbjct: 319 FSADL 323
>OGG1_HUMAN (O15527) N-glycosylase/DNA lyase [Includes: 8-oxoguanine DNA| glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) (AP lyase)] Length = 345 Score = 47.8 bits (112), Expect = 3e-05 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%) Frame = -3 Query: 635 LDKNQAIPVDTHVWKVATK---YMLPELAGKSLTPKLSIVVADAFVTRFGEYAGWAQNVL 465 LDK QA+PVD H+W +A + + K +P+ + + + F + +G YAGWAQ VL Sbjct: 259 LDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVL 318 Query: 464 FIGQL 450 F L Sbjct: 319 FSADL 323
>YBT1_YEAST (P32386) ATP-dependent bile acid permease| Length = 1661 Score = 36.6 bits (83), Expect = 0.064 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 3/74 (4%) Frame = +1 Query: 331 FSLLSMLSYVCISTIFVPRFLLVGFVVSLVTSAATSF-LAGSWPIKR--TFCAQPAYSPN 501 +SL+ LS V + T P+FL V VVS++ F +AGS +KR + P Y Sbjct: 1185 YSLIECLSTVILITFITPQFLSVAIVVSILYYFVGYFYMAGSRELKRFESISRSPIYQHF 1244 Query: 502 LVTNASATTMLSFG 543 T TT+ +FG Sbjct: 1245 SETLVGVTTIRAFG 1258
>OGG1_YEAST (P53397) N-glycosylase/DNA lyase [Includes: 8-oxoguanine DNA| glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) (AP lyase)] Length = 376 Score = 33.5 bits (75), Expect = 0.54 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 17/69 (24%) Frame = -3 Query: 617 IPVDTHVWKVA-----------------TKYMLPELAGKSLTPKLSIVVADAFVTRFGEY 489 +PVD HV ++A TKY ++ K + +L + F ++G Y Sbjct: 257 VPVDVHVSRIAKRDYQISANKNHLKELRTKYNALPISRKKINLELDHIRLMLF-KKWGSY 315 Query: 488 AGWAQNVLF 462 AGWAQ VLF Sbjct: 316 AGWAQGVLF 324
>TSGA_BUCBP (Q89A60) Protein tsgA homolog| Length = 388 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Frame = +3 Query: 249 AGNISQHFLSTGFWVIHALNI-AQTFFDIFLTIHALLCLYFNH-----LCPTFPLGRFRG 410 AG +S F+S+ W+ + +N+ Q F LTI A L L F+H F LG G Sbjct: 55 AGILSSIFISS--WITNIINLKTQLIFGFILTIIATLILIFSHNLTYFSISMFMLGIISG 112 Query: 411 VTGNFG 428 +T + G Sbjct: 113 ITMSIG 118
>FUT11_ARATH (Q9LJK1) Glycoprotein 3-alpha-L-fucosyltransferase A (EC 2.4.1.214)| (Core alpha-(1,3)-fucosyltransferase) (Fuc-T C3) (FucTA) (FucT1) (AtFUT11) Length = 501 Score = 31.2 bits (69), Expect = 2.7 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = +1 Query: 184 IIH*LTKTKKNLPTSS--EDCLEWLETYPSTSFQRDF 288 + H TK+ +L S E C EWLE S ++ RDF Sbjct: 71 LTHFFTKSSSDLKVGSGIEKCQEWLERVDSVTYSRDF 107
>Y420_METJA (Q57863) Hypothetical protein MJ0420| Length = 380 Score = 30.8 bits (68), Expect = 3.5 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 2/103 (1%) Frame = +1 Query: 313 LRHSLTFSLLSMLSYVCISTIFVPRFLLVGFVVSLVTSAATSFLAGSWPIKRTFCAQPA- 489 + HSL S+ +L + I+ +FV + FV L + +FL I + A P Sbjct: 94 ITHSLFLSIAYLLFILIIAELFVKFYKKKIFVDILFSIGIIAFLL----IVLIYGAIPLF 149 Query: 490 -YSPNLVTNASATTMLSFGVRLLPASSGNIYFVATFQTCVSTG 615 Y + N+ ++S G + +YF+ F V G Sbjct: 150 NYEVRMTINSEPLRLISMGALIYAGIENKVYFIIAFMILVLLG 192
>RNFG_BUCBP (Q89AW6) Electron transport complex protein rnfG| Length = 216 Score = 30.4 bits (67), Expect = 4.6 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 9/66 (13%) Frame = +3 Query: 459 NKKNILCPTSILAKSGYKC---------VGDNNAQFWSQALAS*LGQHILCSNLPDMCVN 611 NK+ I C +L G+ + N Q+ Q + + HI+ SNL D + Sbjct: 6 NKRKIFCSALVLGSFGFLAASFVSIIYVITKNKIQYQEQRYKNIIFNHIVPSNLHDNDIQ 65 Query: 612 RNSLIL 629 R+ LIL Sbjct: 66 RSCLIL 71
>FRP1_SCHPO (Q04800) Ferric reductase transmembrane component (EC 1.16.1.7)| (Ferric-chelate reductase) Length = 564 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = +3 Query: 180 VNNSLINKDKKEPSNEFRGLP*MAGN-ISQHFLSTGFWVIHALNIAQT----FFDIFLTI 344 V + LI P F GLP AGN + + S +W IH IA F ++F+ + Sbjct: 277 VEDDLIYMKGPRPKKSFFGLPWGAGNHMYINIPSLSYWQIHPFTIASVPSDDFIELFVAV 336 Query: 345 HA 350 A Sbjct: 337 RA 338
>ADRB3_HUMAN (P13945) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3| adrenoreceptor) Length = 408 Score = 29.6 bits (65), Expect = 7.9 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Frame = +1 Query: 364 ISTIFVPRFLLVGFVVSL--VTSAATSFLAGSWPIKRTFCAQPAYSPNLVTNASATTMLS 537 ++ +FV V+ L V AAT L G WP+ T C L AS T+ + Sbjct: 71 MTNVFVTSLAAADLVMGLLVVPPAATLALTGHWPLGATGCELWTSVDVLCVTASIETLCA 130 Query: 538 FGV-RLLPASSGNIYFVATFQTCVSTGI 618 V R L ++ Y + C T + Sbjct: 131 LAVDRYLAVTNPLRYGALVTKRCARTAV 158
>SPEE_COREF (Q8FMF7) Probable spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 519 Score = 29.6 bits (65), Expect = 7.9 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = -3 Query: 617 IPVDTHVWKVATKYMLPELAGKSLTPKLSIVVADAFV-TRFGEYAGWAQNVLFI 459 + +D V +VA +LP+ G P+++++ DAF R G G + +F+ Sbjct: 325 VELDPEVIEVANTILLPDNGGAMQDPRVTVITDDAFTWLRAGGDGGQRYDAIFV 378
>RBD2_SCHPO (O74926) Rhomboid protein 2 (EC 3.4.21.-)| Length = 248 Score = 29.6 bits (65), Expect = 7.9 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +1 Query: 355 YVCISTIFVPRFLLVGFVVSLVTSAATSFLAGSWPIK 465 Y+ ++TI VP+ +G V T F+ GS P+K Sbjct: 163 YLIMTTILVPKASFIGHASGAVMGYCTPFMLGSIPLK 199 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,059,278 Number of Sequences: 219361 Number of extensions: 2048546 Number of successful extensions: 5517 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5381 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5510 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
