ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5k24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009232.1| Triticum aestivum clone wle1n.pk0102.g9:fis, full... 230 2e-57
2gb|AY110303.1| Zea mays CL26208_1 mRNA sequence 115 7e-23
3gb|AY107376.1| Zea mays PCO134646 mRNA sequence 109 4e-21
4gb|BT016439.1| Zea mays clone Contig272 mRNA sequence 96 7e-17
5gb|AY109400.1| Zea mays CL1052_1 mRNA sequence 96 7e-17
6ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA 94 3e-16
7gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome... 94 3e-16
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 94 3e-16
9gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genom... 94 3e-16
10gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complet... 94 3e-16
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
12dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
13dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
14dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
15dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
16ref|NM_193731.1| Oryza sativa (japonica cultivar-group), predic... 46 0.055
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.055
18dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.055
19dbj|AP003435.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.055
20dbj|AK069177.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.055
21dbj|AK060988.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.055
22gb|AY110888.1| Zea mays CL3094_1 mRNA sequence 44 0.22
23gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 42 0.86
24ref|XM_588423.2| PREDICTED: Bos taurus similar to cytosolic beta... 40 3.4
25emb|AL603757.5| Human DNA sequence from clone RP11-519O9 on chro... 40 3.4
26emb|AL034429.1|HS894K16 Human DNA sequence from clone RP5-894K16... 40 3.4
27gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 3.4
28gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 3.4
29dbj|AK158326.1| Mus musculus adult inner ear cDNA, RIKEN full-le... 40 3.4
30dbj|AK158280.1| Mus musculus adult inner ear cDNA, RIKEN full-le... 40 3.4
31gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 3.4
32gb|AF253508.1|AF253508 Sorghum bicolor cyanogenic beta-glucosida... 40 3.4
33gb|U33817.1|SBU33817 Sorghum bicolor dhurrinase mRNA, nuclear ge... 40 3.4 
>gb|BT009232.1| Triticum aestivum clone wle1n.pk0102.g9:fis, full insert mRNA
           sequence
          Length = 1023

 Score =  230 bits (116), Expect = 2e-57
 Identities = 137/144 (95%)
 Strand = Plus / Minus

                                                                       
Query: 120 tcagtgtcgcagaaggtctctgaaccagtaggccgacgccttggggtgccgatccaggtt 179
           ||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 883 tcagtgttgcagaaggtctctgaaccagtaggccgacgccttggggtgccggtacaggtt 824

                                                                       
Query: 180 ggggctgttgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactc 239
           ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 823 ggggctgttgaagtcgacgtagacgatgccgaacttggaggagtagccggagatccactc 764

                                   
Query: 240 aaagttgtctaggagagaccacgc 263
            |||||||| ||||||||||||||
Sbjct: 763 gaagttgtcgaggagagaccacgc 740
to top
>gb|AY110303.1| Zea mays CL26208_1 mRNA sequence
          Length = 592

 Score =  115 bits (58), Expect = 7e-23
 Identities = 109/126 (86%)
 Strand = Plus / Plus

                                                                       
Query: 135 gtctctgaaccagtaggccgacgccttggggtgccgatccaggttggggctgttgaagtc 194
           |||||||||||||||||| |||||||||||||| || || || |||||  || |||||||
Sbjct: 165 gtctctgaaccagtaggctgacgccttggggtgtcgttcgagcttgggcgtgctgaagtc 224

                                                                       
Query: 195 gacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgtctaggag 254
           |||||||||||| || |||||||||| ||| || |||  |||||| |||||||| |||||
Sbjct: 225 gacgtagacgattccaaacttggacgtgtaacctgactgccactcgaagttgtcgaggag 284

                 
Query: 255 agacca 260
           ||||||
Sbjct: 285 agacca 290
to top
>gb|AY107376.1| Zea mays PCO134646 mRNA sequence
          Length = 845

 Score =  109 bits (55), Expect = 4e-21
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                       
Query: 189 gaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagttgtc 248
           |||||||||||||||||||||||||||||||| |||||| |||| |||||| ||||||||
Sbjct: 437 gaagtcgacgtagacgatgccgaacttggacgtgtagcccgacagccactcgaagttgtc 496

                          
Query: 249 taggagagaccacgc 263
            ||||||||||||||
Sbjct: 497 caggagagaccacgc 511



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 135 gtctctgaaccagtaggccgacgccttggggt 166
           ||||||||||||||| |||||  |||||||||
Sbjct: 389 gtctctgaaccagtacgccgagtccttggggt 420
to top
>gb|BT016439.1| Zea mays clone Contig272 mRNA sequence
          Length = 1566

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 69/76 (90%)
 Strand = Plus / Minus

                                                                        
Query: 185  tgttgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagt 244
            |||||||||| ||||||||||||||||||||||||||||| || | || |||||| ||||
Sbjct: 1301 tgttgaagtccacgtagacgatgccgaacttggacgagtaccctgccagccactcgaagt 1242

                            
Query: 245  tgtctaggagagacca 260
            |||| |||||||||||
Sbjct: 1241 tgtcgaggagagacca 1226
to top
>gb|AY109400.1| Zea mays CL1052_1 mRNA sequence
          Length = 2031

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 69/76 (90%)
 Strand = Plus / Minus

                                                                        
Query: 185  tgttgaagtcgacgtagacgatgccgaacttggacgagtagccggacatccactcaaagt 244
            |||||||||| ||||||||||||||||||||||||||||| || | || |||||| ||||
Sbjct: 1298 tgttgaagtccacgtagacgatgccgaacttggacgagtaccctgccagccactcgaagt 1239

                            
Query: 245  tgtctaggagagacca 260
            |||| |||||||||||
Sbjct: 1238 tgtcgaggagagacca 1223
to top
>ref|XM_469436.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1849

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 103/122 (84%), Gaps = 6/122 (4%)
 Strand = Plus / Minus

                                                                        
Query: 139  ctgaaccagtaggccgacgccttggggtgccgatccaggttggggctgttgaagtcgacg 198
            ||||||||||||||||||||||||||||| || || ||  |      |||||||||||||
Sbjct: 1588 ctgaaccagtaggccgacgccttggggtggcgctcgagcgt------gttgaagtcgacg 1535

                                                                        
Query: 199  tagacgatgccgaacttggacgagtagccggacatccactcaaagttgtctaggagagac 258
            |||||||| || |||||||||| ||| || |||| |||||| |||||||| |||||||||
Sbjct: 1534 tagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagac 1475

              
Query: 259  ca 260
            ||
Sbjct: 1474 ca 1473
to top
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08
             map R2847, complete sequence
          Length = 100918

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 103/122 (84%), Gaps = 6/122 (4%)
 Strand = Plus / Plus

                                                                         
Query: 139   ctgaaccagtaggccgacgccttggggtgccgatccaggttggggctgttgaagtcgacg 198
             ||||||||||||||||||||||||||||| || || ||  |      |||||||||||||
Sbjct: 81470 ctgaaccagtaggccgacgccttggggtggcgctcgagcgt------gttgaagtcgacg 81523

                                                                         
Query: 199   tagacgatgccgaacttggacgagtagccggacatccactcaaagttgtctaggagagac 258
             |||||||| || |||||||||| ||| || |||| |||||| |||||||| |||||||||
Sbjct: 81524 tagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagac 81583

               
Query: 259   ca 260
             ||
Sbjct: 81584 ca 81585
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 103/122 (84%), Gaps = 6/122 (4%)
 Strand = Plus / Plus

                                                                            
Query: 139      ctgaaccagtaggccgacgccttggggtgccgatccaggttggggctgttgaagtcgacg 198
                ||||||||||||||||||||||||||||| || || ||  |      |||||||||||||
Sbjct: 27945742 ctgaaccagtaggccgacgccttggggtggcgctcgagcgt------gttgaagtcgacg 27945795

                                                                            
Query: 199      tagacgatgccgaacttggacgagtagccggacatccactcaaagttgtctaggagagac 258
                |||||||| || |||||||||| ||| || |||| |||||| |||||||| |||||||||
Sbjct: 27945796 tagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagac 27945855

                  
Query: 259      ca 260
                ||
Sbjct: 27945856 ca 27945857
to top
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
             sequence
          Length = 133889

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 103/122 (84%), Gaps = 6/122 (4%)
 Strand = Plus / Minus

                                                                         
Query: 139   ctgaaccagtaggccgacgccttggggtgccgatccaggttggggctgttgaagtcgacg 198
             ||||||||||||||||||||||||||||| || || ||  |      |||||||||||||
Sbjct: 79284 ctgaaccagtaggccgacgccttggggtggcgctcgagcgt------gttgaagtcgacg 79231

                                                                         
Query: 199   tagacgatgccgaacttggacgagtagccggacatccactcaaagttgtctaggagagac 258
             |||||||| || |||||||||| ||| || |||| |||||| |||||||| |||||||||
Sbjct: 79230 tagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagac 79171

               
Query: 259   ca 260
             ||
Sbjct: 79170 ca 79169
to top
>gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complete cds
          Length = 1909

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 103/122 (84%), Gaps = 6/122 (4%)
 Strand = Plus / Minus

                                                                        
Query: 139  ctgaaccagtaggccgacgccttggggtgccgatccaggttggggctgttgaagtcgacg 198
            ||||||||||||||||||||||||||||| || || ||  |      |||||||||||||
Sbjct: 1599 ctgaaccagtaggccgacgccttggggtggcgctcgagcgt------gttgaagtcgacg 1546

                                                                        
Query: 199  tagacgatgccgaacttggacgagtagccggacatccactcaaagttgtctaggagagac 258
            |||||||| || |||||||||| ||| || |||| |||||| |||||||| |||||||||
Sbjct: 1545 tagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagac 1486

              
Query: 259  ca 260
            ||
Sbjct: 1485 ca 1484
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 103/122 (84%), Gaps = 6/122 (4%)
 Strand = Plus / Plus

                                                                            
Query: 139      ctgaaccagtaggccgacgccttggggtgccgatccaggttggggctgttgaagtcgacg 198
                ||||||||||||||||||||||||||||| || || ||  |      |||||||||||||
Sbjct: 28037066 ctgaaccagtaggccgacgccttggggtggcgctcgagcgt------gttgaagtcgacg 28037119

                                                                            
Query: 199      tagacgatgccgaacttggacgagtagccggacatccactcaaagttgtctaggagagac 258
                |||||||| || |||||||||| ||| || |||| |||||| |||||||| |||||||||
Sbjct: 28037120 tagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagac 28037179

                  
Query: 259      ca 260
                ||
Sbjct: 28037180 ca 28037181
to top
>dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H02, full
            insert sequence
          Length = 1846

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 103/122 (84%), Gaps = 6/122 (4%)
 Strand = Plus / Minus

                                                                        
Query: 139  ctgaaccagtaggccgacgccttggggtgccgatccaggttggggctgttgaagtcgacg 198
            ||||||||||||||||||||||||||||| || || ||  |      |||||||||||||
Sbjct: 1591 ctgaaccagtaggccgacgccttggggtggcgctcgagcgt------gttgaagtcgacg 1538

                                                                        
Query: 199  tagacgatgccgaacttggacgagtagccggacatccactcaaagttgtctaggagagac 258
            |||||||| || |||||||||| ||| || |||| |||||| |||||||| |||||||||
Sbjct: 1537 tagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagac 1478

              
Query: 259  ca 260
            ||
Sbjct: 1477 ca 1476
to top
>dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C01, full
            insert sequence
          Length = 1857

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 103/122 (84%), Gaps = 6/122 (4%)
 Strand = Plus / Minus

                                                                        
Query: 139  ctgaaccagtaggccgacgccttggggtgccgatccaggttggggctgttgaagtcgacg 198
            ||||||||||||||||||||||||||||| || || ||  |      |||||||||||||
Sbjct: 1590 ctgaaccagtaggccgacgccttggggtggcgctcgagcgt------gttgaagtcgacg 1537

                                                                        
Query: 199  tagacgatgccgaacttggacgagtagccggacatccactcaaagttgtctaggagagac 258
            |||||||| || |||||||||| ||| || |||| |||||| |||||||| |||||||||
Sbjct: 1536 tagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagac 1477

              
Query: 259  ca 260
            ||
Sbjct: 1476 ca 1475
to top
>dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021K07, full
            insert sequence
          Length = 1894

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 103/122 (84%), Gaps = 6/122 (4%)
 Strand = Plus / Minus

                                                                        
Query: 139  ctgaaccagtaggccgacgccttggggtgccgatccaggttggggctgttgaagtcgacg 198
            ||||||||||||||||||||||||||||| || || ||  |      |||||||||||||
Sbjct: 1594 ctgaaccagtaggccgacgccttggggtggcgctcgagcgt------gttgaagtcgacg 1541

                                                                        
Query: 199  tagacgatgccgaacttggacgagtagccggacatccactcaaagttgtctaggagagac 258
            |||||||| || |||||||||| ||| || |||| |||||| |||||||| |||||||||
Sbjct: 1540 tagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagac 1481

              
Query: 259  ca 260
            ||
Sbjct: 1480 ca 1479
to top
>dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G08, full
            insert sequence
          Length = 1302

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 103/122 (84%), Gaps = 6/122 (4%)
 Strand = Plus / Minus

                                                                        
Query: 139  ctgaaccagtaggccgacgccttggggtgccgatccaggttggggctgttgaagtcgacg 198
            ||||||||||||||||||||||||||||| || || ||  |      |||||||||||||
Sbjct: 1035 ctgaaccagtaggccgacgccttggggtggcgctcgagcgt------gttgaagtcgacg 982

                                                                        
Query: 199  tagacgatgccgaacttggacgagtagccggacatccactcaaagttgtctaggagagac 258
            |||||||| || |||||||||| ||| || |||| |||||| |||||||| |||||||||
Sbjct: 981  tagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagac 922

              
Query: 259  ca 260
            ||
Sbjct: 921  ca 920
to top
>ref|NM_193731.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1389

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 132  aaggtctctgaaccagtaggccgacgccttggggt 166
            |||||| ||||||||||||||||||  ||||||||
Sbjct: 1371 aaggtccctgaaccagtaggccgacatcttggggt 1337
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 132      aaggtctctgaaccagtaggccgacgccttggggt 166
                |||||| ||||||||||||||||||  ||||||||
Sbjct: 17760787 aaggtccctgaaccagtaggccgacatcttggggt 17760753
to top
>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0094H06
          Length = 147245

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 132    aaggtctctgaaccagtaggccgacgccttggggt 166
              |||||| ||||||||||||||||||  ||||||||
Sbjct: 142322 aaggtccctgaaccagtaggccgacatcttggggt 142288
to top
>dbj|AP003435.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0455H03
          Length = 175947

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 132  aaggtctctgaaccagtaggccgacgccttggggt 166
            |||||| ||||||||||||||||||  ||||||||
Sbjct: 7909 aaggtccctgaaccagtaggccgacatcttggggt 7875
to top
>dbj|AK069177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006J10, full
            insert sequence
          Length = 1833

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 132  aaggtctctgaaccagtaggccgacgccttggggt 166
            |||||| ||||||||||||||||||  ||||||||
Sbjct: 1692 aaggtccctgaaccagtaggccgacatcttggggt 1658
to top
>dbj|AK060988.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C08, full
           insert sequence
          Length = 1113

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 132 aaggtctctgaaccagtaggccgacgccttggggt 166
           |||||| ||||||||||||||||||  ||||||||
Sbjct: 991 aaggtccctgaaccagtaggccgacatcttggggt 957
to top
>gb|AY110888.1| Zea mays CL3094_1 mRNA sequence
          Length = 588

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 188 tgaagtcgacgtagacgatgccgaac 213
           |||||||||||||||||| |||||||
Sbjct: 227 tgaagtcgacgtagacgaggccgaac 252
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 163     gggtgccgatccaggttgggg 183
               |||||||||||||||||||||
Sbjct: 1657226 gggtgccgatccaggttgggg 1657206
to top
>ref|XM_588423.2| PREDICTED: Bos taurus similar to cytosolic beta-glucosidase
            (LOC539625), partial mRNA
          Length = 2000

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 233  tccactcaaagttgtctaggagagacca 260
            ||||||||||||| || |||||||||||
Sbjct: 1218 tccactcaaagttatccaggagagacca 1191
to top
>emb|AL603757.5| Human DNA sequence from clone RP11-519O9 on chromosome 6, complete
             sequence
          Length = 110520

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     atctctgaagtctgaatatg 20
             ||||||||||||||||||||
Sbjct: 58279 atctctgaagtctgaatatg 58298
to top
>emb|AL034429.1|HS894K16 Human DNA sequence from clone RP5-894K16 on chromosome 20q113.11-13.13
             Contains the COX6CP2 gene for cytochrome c oxidase subunit
             VIc pseudogene 2, the 5' end of the PTPN1 gene for protein
             tyrosine phosphatase, non-receptor type 1 (EC 3.1.3.48)
             and a CpG island, complete sequence
          Length = 131607

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    aggttggttgattcagaggt 106
             ||||||||||||||||||||
Sbjct: 48025 aggttggttgattcagaggt 48044
to top
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     gccgatccaggttggggctg 186
               ||||||||||||||||||||
Sbjct: 2183816 gccgatccaggttggggctg 2183797
to top
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     gccgatccaggttggggctg 186
               ||||||||||||||||||||
Sbjct: 2491998 gccgatccaggttggggctg 2491979
to top
>dbj|AK158326.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
           library, clone:F930104A16 product:otoancorin, full
           insert sequence
          Length = 2620

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 gatccaggttggggctgttg 189
           ||||||||||||||||||||
Sbjct: 20  gatccaggttggggctgttg 39
to top
>dbj|AK158280.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
           library, clone:F930050D05 product:otoancorin, full
           insert sequence
          Length = 2643

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 gatccaggttggggctgttg 189
           ||||||||||||||||||||
Sbjct: 24  gatccaggttggggctgttg 43
to top
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 185     tgttgaagtcgacgtagacg 204
               ||||||||||||||||||||
Sbjct: 2019271 tgttgaagtcgacgtagacg 2019252
to top
>gb|AF253508.1|AF253508 Sorghum bicolor cyanogenic beta-glucosidase dhurrinase-2 mRNA,
            complete cds
          Length = 1935

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 193  tcgacgtagacgatgccgaa 212
            ||||||||||||||||||||
Sbjct: 1620 tcgacgtagacgatgccgaa 1601
to top
>gb|U33817.1|SBU33817 Sorghum bicolor dhurrinase mRNA, nuclear gene encoding chloroplast
            protein, complete cds
          Length = 1983

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 193  tcgacgtagacgatgccgaa 212
            ||||||||||||||||||||
Sbjct: 1647 tcgacgtagacgatgccgaa 1628


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,148,336
Number of Sequences: 3902068
Number of extensions: 1148336
Number of successful extensions: 18606
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18491
Number of HSP's gapped (non-prelim): 115
length of query: 263
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 241
effective length of database: 17,147,199,772
effective search space: 4132475145052
effective search space used: 4132475145052
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top