ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5k23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506916.1| PREDICTED Oryza sativa (japonica cultivar-group... 170 4e-39
2ref|XM_468698.1| Oryza sativa (japonica cultivar-group), mRNA 170 4e-39
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 170 4e-39
4gb|AC120538.4| Oryza sativa chromosome 3 BAC OSJNBb0059G13 genom... 170 4e-39
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 170 4e-39
6dbj|AK103024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 4e-39
7dbj|AK073878.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 4e-39
8ref|XM_479082.1| Oryza sativa (japonica cultivar-group), mRNA 157 6e-35
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 157 6e-35
10dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic D... 157 6e-35
11dbj|AK070405.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 6e-35
12dbj|AK059691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 6e-35
13gb|AY104623.1| Zea mays PCO143240 mRNA sequence 155 2e-34
14gb|AY107256.1| Zea mays PCO118908 mRNA sequence 131 3e-27
15emb|BX470231.8| Zebrafish DNA sequence from clone CH211-63H10 in... 42 2.4
16gb|AY178865.1| Rattus norvegicus retinol dehydrogenase 10 mRNA, ... 40 9.3
17gb|AC166289.4| Mus musculus chromosome 7, clone RP24-132A16, com... 40 9.3
18ref|NM_189245.1| Oryza sativa (japonica cultivar-group), predic... 40 9.3
19gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 9.3
20gb|BC019796.1| Mus musculus retinol dehydrogenase 10 (all-trans)... 40 9.3
21gb|AC101762.7| Mus musculus chromosome 7, clone RP24-315G8, comp... 40 9.3
22gb|BC038334.1| Mus musculus retinol dehydrogenase 10 (all-trans)... 40 9.3
23gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 9.3
24emb|AL355344.20| Human DNA sequence from clone RP11-710A11 on ch... 40 9.3
25dbj|AK149656.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 9.3
26gb|BC052546.1| Mus musculus retinol dehydrogenase 10 (all-trans)... 40 9.3
27dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
29gb|AC158314.5| Mus musculus chromosome 7, clone RP23-145E21, com... 40 9.3
30ref|NM_181478.2| Rattus norvegicus retinol dehydrogenase 10 (all... 40 9.3
31gb|AC024267.18| Homo sapiens chromosome 17, clone RP11-20B24, co... 40 9.3
32dbj|AP004767.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
33dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
34dbj|AK103881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.3
35dbj|AK069696.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.3
36emb|AL929455.8| Mouse DNA sequence from clone RP23-463J10 on chr... 40 9.3
37ref|NM_133832.2| Mus musculus retinol dehydrogenase 10 (all-tran... 40 9.3
38gb|AC162442.19| Mus musculus chromosome 1, clone RP24-178O17, co... 40 9.3
39gb|AF456767.1| Mus musculus retinol dehydrogenase 10 mRNA, compl... 40 9.3 
>ref|XM_506916.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0059G13.23
            mRNA
          Length = 2926

 Score =  170 bits (86), Expect = 4e-39
 Identities = 167/194 (86%)
 Strand = Plus / Minus

                                                                        
Query: 486  atgtttgatgccgagtttattacagggagggtgaaggtgatcctctcgggtggaggctgt 545
            ||||| |||||||||||||| || || |||||||||||||||||||| ||||| |||   
Sbjct: 2547 atgttcgatgccgagtttatcacgggaagggtgaaggtgatcctctccggtggcggcacc 2488

                                                                        
Query: 546  ggggagtccgtgatgtaggtgacccagtcgtctttcagttcgagggcttggtggttgggg 605
            || ||||| ||||||||||||||||||||||| || || || || ||  | |||||||||
Sbjct: 2487 ggagagtcggtgatgtaggtgacccagtcgtccttgagctcaagtgcaggatggttgggg 2428

                                                                        
Query: 606  aacaatgaggccacatgcccgtcggagcccatgccaaggaggatgagatcaaacttgggg 665
            ||||||||||| ||||| || || ||||| |||| ||||||||| |||||||||||||||
Sbjct: 2427 aacaatgaggctacatgaccatcagagccgatgctaaggaggatcagatcaaacttgggg 2368

                          
Query: 666  cagtcggtgctctc 679
            |||||| |||||||
Sbjct: 2367 cagtcgttgctctc 2354



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 338  cgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcagg 394
            ||||||||||| |||||| |||| ||| |||||||||||||| ||||| || |||||
Sbjct: 2692 cgccttgtccaaaaaccaaaccaacttaccgtccgttggctgaaccattcttgcagg 2636
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>ref|XM_468698.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1349

 Score =  170 bits (86), Expect = 4e-39
 Identities = 167/194 (86%)
 Strand = Plus / Minus

                                                                       
Query: 486 atgtttgatgccgagtttattacagggagggtgaaggtgatcctctcgggtggaggctgt 545
           ||||| |||||||||||||| || || |||||||||||||||||||| ||||| |||   
Sbjct: 867 atgttcgatgccgagtttatcacgggaagggtgaaggtgatcctctccggtggcggcacc 808

                                                                       
Query: 546 ggggagtccgtgatgtaggtgacccagtcgtctttcagttcgagggcttggtggttgggg 605
           || ||||| ||||||||||||||||||||||| || || || || ||  | |||||||||
Sbjct: 807 ggagagtcggtgatgtaggtgacccagtcgtccttgagctcaagtgcaggatggttgggg 748

                                                                       
Query: 606 aacaatgaggccacatgcccgtcggagcccatgccaaggaggatgagatcaaacttgggg 665
           ||||||||||| ||||| || || ||||| |||| ||||||||| |||||||||||||||
Sbjct: 747 aacaatgaggctacatgaccatcagagccgatgctaaggaggatcagatcaaacttgggg 688

                         
Query: 666 cagtcggtgctctc 679
           |||||| |||||||
Sbjct: 687 cagtcgttgctctc 674



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 338  cgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcagg 394
            ||||||||||| |||||| |||| ||| |||||||||||||| ||||| || |||||
Sbjct: 1012 cgccttgtccaaaaaccaaaccaacttaccgtccgttggctgaaccattcttgcagg 956
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  170 bits (86), Expect = 4e-39
 Identities = 167/194 (86%)
 Strand = Plus / Plus

                                                                            
Query: 486      atgtttgatgccgagtttattacagggagggtgaaggtgatcctctcgggtggaggctgt 545
                ||||| |||||||||||||| || || |||||||||||||||||||| ||||| |||   
Sbjct: 17100817 atgttcgatgccgagtttatcacgggaagggtgaaggtgatcctctccggtggcggcacc 17100876

                                                                            
Query: 546      ggggagtccgtgatgtaggtgacccagtcgtctttcagttcgagggcttggtggttgggg 605
                || ||||| ||||||||||||||||||||||| || || || || ||  | |||||||||
Sbjct: 17100877 ggagagtcggtgatgtaggtgacccagtcgtccttgagctcaagtgcaggatggttgggg 17100936

                                                                            
Query: 606      aacaatgaggccacatgcccgtcggagcccatgccaaggaggatgagatcaaacttgggg 665
                ||||||||||| ||||| || || ||||| |||| ||||||||| |||||||||||||||
Sbjct: 17100937 aacaatgaggctacatgaccatcagagccgatgctaaggaggatcagatcaaacttgggg 17100996

                              
Query: 666      cagtcggtgctctc 679
                |||||| |||||||
Sbjct: 17100997 cagtcgttgctctc 17101010



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                         
Query: 338      cgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcagg 394
                ||||||||||| |||||| |||| ||| |||||||||||||| ||||| || |||||
Sbjct: 17100672 cgccttgtccaaaaaccaaaccaacttaccgtccgttggctgaaccattcttgcagg 17100728
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>gb|AC120538.4| Oryza sativa chromosome 3 BAC OSJNBb0059G13 genomic sequence, complete
              sequence
          Length = 157662

 Score =  170 bits (86), Expect = 4e-39
 Identities = 167/194 (86%)
 Strand = Plus / Plus

                                                                          
Query: 486    atgtttgatgccgagtttattacagggagggtgaaggtgatcctctcgggtggaggctgt 545
              ||||| |||||||||||||| || || |||||||||||||||||||| ||||| |||   
Sbjct: 131563 atgttcgatgccgagtttatcacgggaagggtgaaggtgatcctctccggtggcggcacc 131622

                                                                          
Query: 546    ggggagtccgtgatgtaggtgacccagtcgtctttcagttcgagggcttggtggttgggg 605
              || ||||| ||||||||||||||||||||||| || || || || ||  | |||||||||
Sbjct: 131623 ggagagtcggtgatgtaggtgacccagtcgtccttgagctcaagtgcaggatggttgggg 131682

                                                                          
Query: 606    aacaatgaggccacatgcccgtcggagcccatgccaaggaggatgagatcaaacttgggg 665
              ||||||||||| ||||| || || ||||| |||| ||||||||| |||||||||||||||
Sbjct: 131683 aacaatgaggctacatgaccatcagagccgatgctaaggaggatcagatcaaacttgggg 131742

                            
Query: 666    cagtcggtgctctc 679
              |||||| |||||||
Sbjct: 131743 cagtcgttgctctc 131756



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                       
Query: 338    cgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcagg 394
              ||||||||||| |||||| |||| ||| |||||||||||||| ||||| || |||||
Sbjct: 131418 cgccttgtccaaaaaccaaaccaacttaccgtccgttggctgaaccattcttgcagg 131474
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  170 bits (86), Expect = 4e-39
 Identities = 167/194 (86%)
 Strand = Plus / Plus

                                                                            
Query: 486      atgtttgatgccgagtttattacagggagggtgaaggtgatcctctcgggtggaggctgt 545
                ||||| |||||||||||||| || || |||||||||||||||||||| ||||| |||   
Sbjct: 17094386 atgttcgatgccgagtttatcacgggaagggtgaaggtgatcctctccggtggcggcacc 17094445

                                                                            
Query: 546      ggggagtccgtgatgtaggtgacccagtcgtctttcagttcgagggcttggtggttgggg 605
                || ||||| ||||||||||||||||||||||| || || || || ||  | |||||||||
Sbjct: 17094446 ggagagtcggtgatgtaggtgacccagtcgtccttgagctcaagtgcaggatggttgggg 17094505

                                                                            
Query: 606      aacaatgaggccacatgcccgtcggagcccatgccaaggaggatgagatcaaacttgggg 665
                ||||||||||| ||||| || || ||||| |||| ||||||||| |||||||||||||||
Sbjct: 17094506 aacaatgaggctacatgaccatcagagccgatgctaaggaggatcagatcaaacttgggg 17094565

                              
Query: 666      cagtcggtgctctc 679
                |||||| |||||||
Sbjct: 17094566 cagtcgttgctctc 17094579



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                         
Query: 338      cgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcagg 394
                ||||||||||| |||||| |||| ||| |||||||||||||| ||||| || |||||
Sbjct: 17094241 cgccttgtccaaaaaccaaaccaacttaccgtccgttggctgaaccattcttgcagg 17094297
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>dbj|AK103024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117B06, full
           insert sequence
          Length = 1349

 Score =  170 bits (86), Expect = 4e-39
 Identities = 167/194 (86%)
 Strand = Plus / Minus

                                                                       
Query: 486 atgtttgatgccgagtttattacagggagggtgaaggtgatcctctcgggtggaggctgt 545
           ||||| |||||||||||||| || || |||||||||||||||||||| ||||| |||   
Sbjct: 867 atgttcgatgccgagtttatcacgggaagggtgaaggtgatcctctccggtggcggcacc 808

                                                                       
Query: 546 ggggagtccgtgatgtaggtgacccagtcgtctttcagttcgagggcttggtggttgggg 605
           || ||||| ||||||||||||||||||||||| || || || || ||  | |||||||||
Sbjct: 807 ggagagtcggtgatgtaggtgacccagtcgtccttgagctcaagtgcaggatggttgggg 748

                                                                       
Query: 606 aacaatgaggccacatgcccgtcggagcccatgccaaggaggatgagatcaaacttgggg 665
           ||||||||||| ||||| || || ||||| |||| ||||||||| |||||||||||||||
Sbjct: 747 aacaatgaggctacatgaccatcagagccgatgctaaggaggatcagatcaaacttgggg 688

                         
Query: 666 cagtcggtgctctc 679
           |||||| |||||||
Sbjct: 687 cagtcgttgctctc 674



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 338  cgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcagg 394
            ||||||||||| |||||| |||| ||| |||||||||||||| ||||| || |||||
Sbjct: 1012 cgccttgtccaaaaaccaaaccaacttaccgtccgttggctgaaccattcttgcagg 956
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>dbj|AK073878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072G18, full
            insert sequence
          Length = 2924

 Score =  170 bits (86), Expect = 4e-39
 Identities = 167/194 (86%)
 Strand = Plus / Minus

                                                                        
Query: 486  atgtttgatgccgagtttattacagggagggtgaaggtgatcctctcgggtggaggctgt 545
            ||||| |||||||||||||| || || |||||||||||||||||||| ||||| |||   
Sbjct: 2545 atgttcgatgccgagtttatcacgggaagggtgaaggtgatcctctccggtggcggcacc 2486

                                                                        
Query: 546  ggggagtccgtgatgtaggtgacccagtcgtctttcagttcgagggcttggtggttgggg 605
            || ||||| ||||||||||||||||||||||| || || || || ||  | |||||||||
Sbjct: 2485 ggagagtcggtgatgtaggtgacccagtcgtccttgagctcaagtgcaggatggttgggg 2426

                                                                        
Query: 606  aacaatgaggccacatgcccgtcggagcccatgccaaggaggatgagatcaaacttgggg 665
            ||||||||||| ||||| || || ||||| |||| ||||||||| |||||||||||||||
Sbjct: 2425 aacaatgaggctacatgaccatcagagccgatgctaaggaggatcagatcaaacttgggg 2366

                          
Query: 666  cagtcggtgctctc 679
            |||||| |||||||
Sbjct: 2365 cagtcgttgctctc 2352



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 338  cgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcagg 394
            ||||||||||| |||||| |||| ||| |||||||||||||| ||||| || |||||
Sbjct: 2690 cgccttgtccaaaaaccaaaccaacttaccgtccgttggctgaaccattcttgcagg 2634
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>ref|XM_479082.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1350

 Score =  157 bits (79), Expect = 6e-35
 Identities = 163/191 (85%)
 Strand = Plus / Minus

                                                                       
Query: 486 atgtttgatgccgagtttattacagggagggtgaaggtgatcctctcgggtggaggctgt 545
           ||||| || ||||||||||| |||||||| ||||||||||||| ||| ||||||||||| 
Sbjct: 836 atgttcgaagccgagtttatcacagggagagtgaaggtgatccgctcaggtggaggctgg 777

                                                                       
Query: 546 ggggagtccgtgatgtaggtgacccagtcgtctttcagttcgagggcttggtggttgggg 605
           || ||||| ||||||||||||| |||||| |||||||| || |||| | | |||||||||
Sbjct: 776 ggagagtcggtgatgtaggtgatccagtcatctttcagctcaagggatggatggttgggg 717

                                                                       
Query: 606 aacaatgaggccacatgcccgtcggagcccatgccaaggaggatgagatcaaacttgggg 665
           |||||||| |||||||| || || || |||||||  || ||||| ||||| |||||||||
Sbjct: 716 aacaatgaagccacatgtccatcagaacccatgctgagcaggattagatcgaacttgggg 657

                      
Query: 666 cagtcggtgct 676
           || ||| ||||
Sbjct: 656 caatcgttgct 646



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                       
Query: 341 cttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcaggcaggga 400
           |||||||| ||||||||||||||| ||||| |||||||| ||||| || || ||||| ||
Sbjct: 981 cttgtccaaaaaccacaccagcttgccgtctgttggctgaaccattcttgctggcagcga 922

                          
Query: 401 tgtgagggcgtctgg 415
           || | |||| |||||
Sbjct: 921 tgagggggcttctgg 907
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  157 bits (79), Expect = 6e-35
 Identities = 163/191 (85%)
 Strand = Plus / Minus

                                                                            
Query: 486      atgtttgatgccgagtttattacagggagggtgaaggtgatcctctcgggtggaggctgt 545
                ||||| || ||||||||||| |||||||| ||||||||||||| ||| ||||||||||| 
Sbjct: 24687950 atgttcgaagccgagtttatcacagggagagtgaaggtgatccgctcaggtggaggctgg 24687891

                                                                            
Query: 546      ggggagtccgtgatgtaggtgacccagtcgtctttcagttcgagggcttggtggttgggg 605
                || ||||| ||||||||||||| |||||| |||||||| || |||| | | |||||||||
Sbjct: 24687890 ggagagtcggtgatgtaggtgatccagtcatctttcagctcaagggatggatggttgggg 24687831

                                                                            
Query: 606      aacaatgaggccacatgcccgtcggagcccatgccaaggaggatgagatcaaacttgggg 665
                |||||||| |||||||| || || || |||||||  || ||||| ||||| |||||||||
Sbjct: 24687830 aacaatgaagccacatgtccatcagaacccatgctgagcaggattagatcgaacttgggg 24687771

                           
Query: 666      cagtcggtgct 676
                || ||| ||||
Sbjct: 24687770 caatcgttgct 24687760



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                            
Query: 341      cttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcaggcaggga 400
                |||||||| ||||||||||||||| ||||| |||||||| ||||| || || ||||| ||
Sbjct: 24688095 cttgtccaaaaaccacaccagcttgccgtctgttggctgaaccattcttgctggcagcga 24688036

                               
Query: 401      tgtgagggcgtctgg 415
                || | |||| |||||
Sbjct: 24688035 tgagggggcttctgg 24688021
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>dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0040H10
          Length = 132919

 Score =  157 bits (79), Expect = 6e-35
 Identities = 163/191 (85%)
 Strand = Plus / Minus

                                                                         
Query: 486   atgtttgatgccgagtttattacagggagggtgaaggtgatcctctcgggtggaggctgt 545
             ||||| || ||||||||||| |||||||| ||||||||||||| ||| ||||||||||| 
Sbjct: 43887 atgttcgaagccgagtttatcacagggagagtgaaggtgatccgctcaggtggaggctgg 43828

                                                                         
Query: 546   ggggagtccgtgatgtaggtgacccagtcgtctttcagttcgagggcttggtggttgggg 605
             || ||||| ||||||||||||| |||||| |||||||| || |||| | | |||||||||
Sbjct: 43827 ggagagtcggtgatgtaggtgatccagtcatctttcagctcaagggatggatggttgggg 43768

                                                                         
Query: 606   aacaatgaggccacatgcccgtcggagcccatgccaaggaggatgagatcaaacttgggg 665
             |||||||| |||||||| || || || |||||||  || ||||| ||||| |||||||||
Sbjct: 43767 aacaatgaagccacatgtccatcagaacccatgctgagcaggattagatcgaacttgggg 43708

                        
Query: 666   cagtcggtgct 676
             || ||| ||||
Sbjct: 43707 caatcgttgct 43697



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                         
Query: 341   cttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcaggcaggga 400
             |||||||| ||||||||||||||| ||||| |||||||| ||||| || || ||||| ||
Sbjct: 44032 cttgtccaaaaaccacaccagcttgccgtctgttggctgaaccattcttgctggcagcga 43973

                            
Query: 401   tgtgagggcgtctgg 415
             || | |||| |||||
Sbjct: 43972 tgagggggcttctgg 43958
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>dbj|AK070405.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052F08, full
           insert sequence
          Length = 1350

 Score =  157 bits (79), Expect = 6e-35
 Identities = 163/191 (85%)
 Strand = Plus / Minus

                                                                       
Query: 486 atgtttgatgccgagtttattacagggagggtgaaggtgatcctctcgggtggaggctgt 545
           ||||| || ||||||||||| |||||||| ||||||||||||| ||| ||||||||||| 
Sbjct: 836 atgttcgaagccgagtttatcacagggagagtgaaggtgatccgctcaggtggaggctgg 777

                                                                       
Query: 546 ggggagtccgtgatgtaggtgacccagtcgtctttcagttcgagggcttggtggttgggg 605
           || ||||| ||||||||||||| |||||| |||||||| || |||| | | |||||||||
Sbjct: 776 ggagagtcggtgatgtaggtgatccagtcatctttcagctcaagggatggatggttgggg 717

                                                                       
Query: 606 aacaatgaggccacatgcccgtcggagcccatgccaaggaggatgagatcaaacttgggg 665
           |||||||| |||||||| || || || |||||||  || ||||| ||||| |||||||||
Sbjct: 716 aacaatgaagccacatgtccatcagaacccatgctgagcaggattagatcgaacttgggg 657

                      
Query: 666 cagtcggtgct 676
           || ||| ||||
Sbjct: 656 caatcgttgct 646



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                       
Query: 341 cttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcaggcaggga 400
           |||||||| ||||||||||||||| ||||| |||||||| ||||| || || ||||| ||
Sbjct: 981 cttgtccaaaaaccacaccagcttgccgtctgttggctgaaccattcttgctggcagcga 922

                          
Query: 401 tgtgagggcgtctgg 415
           || | |||| |||||
Sbjct: 921 tgagggggcttctgg 907
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>dbj|AK059691.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B03, full
           insert sequence
          Length = 950

 Score =  157 bits (79), Expect = 6e-35
 Identities = 163/191 (85%)
 Strand = Plus / Minus

                                                                       
Query: 486 atgtttgatgccgagtttattacagggagggtgaaggtgatcctctcgggtggaggctgt 545
           ||||| || ||||||||||| |||||||| ||||||||||||| ||| ||||||||||| 
Sbjct: 432 atgttcgaagccgagtttatcacagggagagtgaaggtgatccgctcaggtggaggctgg 373

                                                                       
Query: 546 ggggagtccgtgatgtaggtgacccagtcgtctttcagttcgagggcttggtggttgggg 605
           || ||||| ||||||||||||| |||||| |||||||| || |||| | | |||||||||
Sbjct: 372 ggagagtcggtgatgtaggtgatccagtcatctttcagctcaagggatggatggttgggg 313

                                                                       
Query: 606 aacaatgaggccacatgcccgtcggagcccatgccaaggaggatgagatcaaacttgggg 665
           |||||||| |||||||| || || || |||||||  || ||||| ||||| |||||||||
Sbjct: 312 aacaatgaagccacatgtccatcagaacccatgctgagcaggattagatcgaacttgggg 253

                      
Query: 666 cagtcggtgct 676
           || ||| ||||
Sbjct: 252 caatcgttgct 242



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                       
Query: 341 cttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcaggcaggga 400
           |||||||| ||||||||||||||| ||||| |||||||| ||||| || || ||||| ||
Sbjct: 577 cttgtccaaaaaccacaccagcttgccgtctgttggctgaaccattcttgctggcagcga 518

                          
Query: 401 tgtgagggcgtctgg 415
           || | |||| |||||
Sbjct: 517 tgagggggcttctgg 503
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>gb|AY104623.1| Zea mays PCO143240 mRNA sequence
          Length = 1360

 Score =  155 bits (78), Expect = 2e-34
 Identities = 159/186 (85%)
 Strand = Plus / Minus

                                                                       
Query: 486 atgtttgatgccgagtttattacagggagggtgaaggtgatcctctcgggtggaggctgt 545
           ||||| ||||| ||||| || || ||||| ||||||||||||||||| || |||||||| 
Sbjct: 840 atgttggatgctgagttgatcactgggagagtgaaggtgatcctctcaggaggaggctgc 781

                                                                       
Query: 546 ggggagtccgtgatgtaggtgacccagtcgtctttcagttcgagggcttggtggttgggg 605
           || ||||| ||||||||||||||||||||||||||||| || | |||  ||||||| |||
Sbjct: 780 ggagagtcggtgatgtaggtgacccagtcgtctttcagctccatggcagggtggttcggg 721

                                                                       
Query: 606 aacaatgaggccacatgcccgtcggagcccatgccaaggaggatgagatcaaacttgggg 665
           || |  |||||||||||||| ||||||||||||   || ||||||||||| |||||||| 
Sbjct: 720 aaaagcgaggccacatgcccatcggagcccatggtgagaaggatgagatcgaacttggga 661

                 
Query: 666 cagtcg 671
           ||||||
Sbjct: 660 cagtcg 655



 Score =  103 bits (52), Expect = 7e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                       
Query: 336 gccgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcaggc 395
           |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct: 989 gccgccttgtccagaaaccataccagcttcccgtccgttggctggaccattctagcaggc 930

                   
Query: 396 agggatgt 403
           || |||||
Sbjct: 929 agcgatgt 922
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>gb|AY107256.1| Zea mays PCO118908 mRNA sequence
          Length = 1212

 Score =  131 bits (66), Expect = 3e-27
 Identities = 117/134 (87%)
 Strand = Plus / Minus

                                                                       
Query: 495 gccgagtttattacagggagggtgaaggtgatcctctcgggtggaggctgtggggagtcc 554
           ||||||||||| || || ||||||||||||||||||||||| |||||||  |||||||| 
Sbjct: 786 gccgagtttatgacgggaagggtgaaggtgatcctctcgggcggaggctccggggagtcg 727

                                                                       
Query: 555 gtgatgtaggtgacccagtcgtctttcagttcgagggcttggtggttggggaacaatgag 614
           ||||||||||| ||||||||| ||||||| || || ||| |||||||||||||||  |||
Sbjct: 726 gtgatgtaggtcacccagtcgcctttcagctccagcgctgggtggttggggaacagcgag 667

                         
Query: 615 gccacatgcccgtc 628
           || || ||||||||
Sbjct: 666 gctacgtgcccgtc 653
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>emb|BX470231.8| Zebrafish DNA sequence from clone CH211-63H10 in linkage group 3,
              complete sequence
          Length = 180778

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     ttaggtcttaatgttctcatc 49
              |||||||||||||||||||||
Sbjct: 129029 ttaggtcttaatgttctcatc 129009
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>gb|AY178865.1| Rattus norvegicus retinol dehydrogenase 10 mRNA, complete cds
          Length = 1061

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 343 tgtccagaaaccacaccagc 362
           ||||||||||||||||||||
Sbjct: 469 tgtccagaaaccacaccagc 450
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>gb|AC166289.4| Mus musculus chromosome 7, clone RP24-132A16, complete sequence
          Length = 172931

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    gagagctaaccttcttccag 207
              ||||||||||||||||||||
Sbjct: 134268 gagagctaaccttcttccag 134287
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>ref|NM_189245.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 591

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 288 tgctgctgctcgtaggcgtcgtcc 311
           ||||||||||||||| ||||||||
Sbjct: 71  tgctgctgctcgtagtcgtcgtcc 48
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 308     gtccgacagcgcctcgagcg 327
               ||||||||||||||||||||
Sbjct: 2357197 gtccgacagcgcctcgagcg 2357178
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>gb|BC019796.1| Mus musculus retinol dehydrogenase 10 (all-trans), mRNA (cDNA clone
           MGC:30527 IMAGE:4923005), complete cds
          Length = 2310

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 343 tgtccagaaaccacaccagc 362
           ||||||||||||||||||||
Sbjct: 591 tgtccagaaaccacaccagc 572
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>gb|AC101762.7| Mus musculus chromosome 7, clone RP24-315G8, complete sequence
          Length = 185445

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    gagagctaaccttcttccag 207
              ||||||||||||||||||||
Sbjct: 139488 gagagctaaccttcttccag 139507
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>gb|BC038334.1| Mus musculus retinol dehydrogenase 10 (all-trans), mRNA (cDNA clone
           IMAGE:1395365)
          Length = 1400

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 343 tgtccagaaaccacaccagc 362
           ||||||||||||||||||||
Sbjct: 711 tgtccagaaaccacaccagc 730
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 304     cgtcgtccgacagcgcctcg 323
               ||||||||||||||||||||
Sbjct: 3594603 cgtcgtccgacagcgcctcg 3594584
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>emb|AL355344.20| Human DNA sequence from clone RP11-710A11 on chromosome 10 Contains
            the 3' end for a novel gene (KIAA1274), the PRF1 gene
            forperforin 1 (pore forming protein), the 5' end of the
            ADAMTS14 gene for a disintegrin-like and metalloprotease
            (reprolysin type) with thrombospondin type 1 motif 14,
            and one CpG island, complete sequence
          Length = 149490

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 380  gaccatcctggcaggcaggg 399
            ||||||||||||||||||||
Sbjct: 2826 gaccatcctggcaggcaggg 2807
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>dbj|AK149656.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:G530008C05 product:retinol
           dehydrogenase 10 (all-trans), full insert sequence
          Length = 2363

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 343 tgtccagaaaccacaccagc 362
           ||||||||||||||||||||
Sbjct: 663 tgtccagaaaccacaccagc 644
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>gb|BC052546.1| Mus musculus retinol dehydrogenase 10 (all-trans), mRNA (cDNA clone
           IMAGE:1429338)
          Length = 1413

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 343 tgtccagaaaccacaccagc 362
           ||||||||||||||||||||
Sbjct: 715 tgtccagaaaccacaccagc 734
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                            
Query: 528      ctctcgggtggaggctgtggggagtccgtgatgtaggtgaccca 571
                ||||| ||||| |||| ||| || ||| ||||||||||||||||
Sbjct: 20424037 ctctcaggtggtggctttggagaatccttgatgtaggtgaccca 20424080
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 288      tgctgctgctcgtaggcgtcgtcc 311
                ||||||||||||||| ||||||||
Sbjct: 16500469 tgctgctgctcgtagtcgtcgtcc 16500492
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>gb|AC158314.5| Mus musculus chromosome 7, clone RP23-145E21, complete sequence
          Length = 185668

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    gagagctaaccttcttccag 207
              ||||||||||||||||||||
Sbjct: 168206 gagagctaaccttcttccag 168187
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>ref|NM_181478.2| Rattus norvegicus retinol dehydrogenase 10 (all-trans) (Rdh10),
           mRNA
          Length = 1061

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 343 tgtccagaaaccacaccagc 362
           ||||||||||||||||||||
Sbjct: 469 tgtccagaaaccacaccagc 450
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>gb|AC024267.18| Homo sapiens chromosome 17, clone RP11-20B24, complete sequence
          Length = 175020

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 524   gatcctctcgggtggaggctgtgg 547
             |||||||||| |||||||||||||
Sbjct: 80916 gatcctctcgagtggaggctgtgg 80939
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>dbj|AP004767.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1460_H08
          Length = 113514

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 288   tgctgctgctcgtaggcgtcgtcc 311
             ||||||||||||||| ||||||||
Sbjct: 21139 tgctgctgctcgtagtcgtcgtcc 21162
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>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1531_B07
          Length = 115245

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 528   ctctcgggtggaggctgtggggagtccgtgatgtaggtgaccca 571
             ||||| ||||| |||| ||| || ||| ||||||||||||||||
Sbjct: 52176 ctctcaggtggtggctttggagaatccttgatgtaggtgaccca 52219
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>dbj|AK103881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033149O18, full
           insert sequence
          Length = 900

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 288 tgctgctgctcgtaggcgtcgtcc 311
           ||||||||||||||| ||||||||
Sbjct: 172 tgctgctgctcgtagtcgtcgtcc 149
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>dbj|AK069696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028P13, full
           insert sequence
          Length = 1234

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 528 ctctcgggtggaggctgtggggagtccgtgatgtaggtgaccca 571
           ||||| ||||| |||| ||| || ||| ||||||||||||||||
Sbjct: 763 ctctcaggtggtggctttggagaatccttgatgtaggtgaccca 720
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>emb|AL929455.8| Mouse DNA sequence from clone RP23-463J10 on chromosome 2, complete
             sequence
          Length = 84387

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   tctccactctgttctgagtt 276
             ||||||||||||||||||||
Sbjct: 26396 tctccactctgttctgagtt 26377
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>ref|NM_133832.2| Mus musculus retinol dehydrogenase 10 (all-trans) (Rdh10), mRNA
          Length = 2310

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 343 tgtccagaaaccacaccagc 362
           ||||||||||||||||||||
Sbjct: 591 tgtccagaaaccacaccagc 572
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>gb|AC162442.19| Mus musculus chromosome 1, clone RP24-178O17, complete sequence
          Length = 201383

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   tgtccagaaaccacaccagc 362
             ||||||||||||||||||||
Sbjct: 86407 tgtccagaaaccacaccagc 86388
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>gb|AF456767.1| Mus musculus retinol dehydrogenase 10 mRNA, complete cds
          Length = 1364

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 343 tgtccagaaaccacaccagc 362
           ||||||||||||||||||||
Sbjct: 699 tgtccagaaaccacaccagc 680


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,825,412
Number of Sequences: 3902068
Number of extensions: 4825412
Number of successful extensions: 78117
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77867
Number of HSP's gapped (non-prelim): 243
length of query: 683
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 660
effective length of database: 17,143,297,704
effective search space: 11314576484640
effective search space used: 11314576484640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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