ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5k17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK104417.1| Oryza sativa (japonica cultivar-group) cDNA clon... 325 9e-86
2dbj|AK070814.1| Oryza sativa (japonica cultivar-group) cDNA clon... 325 9e-86
3ref|XM_470956.1| Oryza sativa (japonica cultivar-group), predic... 315 8e-83
4gb|AY109846.1| Zea mays CL5362_2 mRNA sequence 153 7e-34
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
6emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4,... 149 1e-32
7emb|AL392003.11| Human DNA sequence from clone RP11-331H2 on chr... 44 0.48
8gb|AC134503.2| Homo sapiens 3 BAC RP11-657G5 (Roswell Park Cance... 42 1.9
9emb|AL355605.10| Human DNA sequence from clone RP11-456P14 on ch... 42 1.9
10gb|AC093829.2| Homo sapiens BAC clone RP11-401E5 from 4, complet... 42 1.9
11gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Ca... 42 1.9
12gb|AC102775.6| Mus musculus chromosome 8, clone RP23-115C10, com... 40 7.5
13gb|BC103916.1| Homo sapiens tetratricopeptide repeat domain 6, m... 40 7.5
14gb|BC103915.1| Homo sapiens tetratricopeptide repeat domain 6, m... 40 7.5
15gb|BC103914.1| Homo sapiens tetratricopeptide repeat domain 6, m... 40 7.5
16gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold 40 7.5
17ref|NM_001007795.1| Homo sapiens tetratricopeptide repeat domain... 40 7.5
18gb|AC009055.10| Homo sapiens chromosome 16 clone RP11-256I9, com... 40 7.5
19gb|AC113123.8| Mus musculus chromosome 8, clone RP23-349O15, com... 40 7.5
20emb|AL357312.8| Human DNA sequence from clone RP11-390F10 on chr... 40 7.5
21emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 40 7.5
22gb|AC171242.2| Gallus gallus BAC clone CH261-59O7 from chromosom... 40 7.5
23gb|AC025577.15| Homo sapiens 12 BAC RP11-13C3 (Roswell Park Canc... 40 7.5
24gb|AC146881.3| Otolemur garnettii clone CH256-571D18, complete s... 40 7.5
25gb|AC154637.2| Mus musculus BAC clone RP23-303N14 from chromosom... 40 7.5
26gb|AC171011.2| Gallus gallus BAC clone CH261-112C5 from chromoso... 40 7.5
27emb|AL136296.3|CNS01DW0 Human chromosome 14 DNA sequence BAC R-5... 40 7.5
28emb|BX161415.1|CNSLT1I83 human full-length cDNA clone CS0DD003YF... 40 7.5
29gb|AC170155.2| Phakopsora pachyrhizi clone JGIAFNA-1989A17, comp... 40 7.5
30emb|CT485787.6| Mouse DNA sequence from clone RP23-412N8 on chro... 40 7.5 
>dbj|AK104417.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-A03, full
           insert sequence
          Length = 1035

 Score =  325 bits (164), Expect = 9e-86
 Identities = 299/344 (86%)
 Strand = Plus / Minus

                                                                       
Query: 147 attatctacattttattgttcttcaccatctcttccacgtcgagctctaccgccaaaacc 206
           |||||||||| |||||| |||||| ||||||||||||| || |||||||| |||| ||| 
Sbjct: 883 attatctacactttattattcttcgccatctcttccacatcaagctctactgccagaact 824

                                                                       
Query: 207 ggtgaatcctggaacatggctacacggctgttgtccactggaccatgatcgacggcagtt 266
           ||||||||||||  |||||| |  |||||||| |||||||| ||||| ||||| || |||
Sbjct: 823 ggtgaatcctggttcatggccattcggctgttctccactgggccatggtcgacagccgtt 764

                                                                       
Query: 267 cttaaagagtatatgactctgccaacaatatcagtcatagggacaggcccaaataagcgg 326
           |||||||||||||| ||||||||||  ||||||||||||||||| || ||||| ||||||
Sbjct: 763 cttaaagagtatatcactctgccaaggatatcagtcatagggactggtccaaacaagcgg 704

                                                                       
Query: 327 ctgtccctagcgtcctttgcctttagttcttggttatctgccatgacccagcattcgtcc 386
           || |||||||| ||||||| |||||||  |||||| |||||||  ||||||||||  |||
Sbjct: 703 ctatccctagcttcctttggctttagtgattggttgtctgccagaacccagcattgatcc 644

                                                                       
Query: 387 ttgtcaagtacaaagggctcatccttctcatcagtagagaccatctcatagccttgcacg 446
           |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||  | |
Sbjct: 643 ttgtcaagtacaaacggctcatccttctcatcattagagaccatctcataaccttctagg 584

                                                       
Query: 447 gcagccagtcgccggacaattaaatcatcggatttctctgggtc 490
           ||||||| ||| || || ||||||||||| ||||||||||||||
Sbjct: 583 gcagccaatcgtcgaacgattaaatcatcagatttctctgggtc 540
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>dbj|AK070814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072A16, full
           insert sequence
          Length = 1035

 Score =  325 bits (164), Expect = 9e-86
 Identities = 299/344 (86%)
 Strand = Plus / Minus

                                                                       
Query: 147 attatctacattttattgttcttcaccatctcttccacgtcgagctctaccgccaaaacc 206
           |||||||||| |||||| |||||| ||||||||||||| || |||||||| |||| ||| 
Sbjct: 883 attatctacactttattattcttcgccatctcttccacatcaagctctactgccagaact 824

                                                                       
Query: 207 ggtgaatcctggaacatggctacacggctgttgtccactggaccatgatcgacggcagtt 266
           ||||||||||||  |||||| |  |||||||| |||||||| ||||| ||||| || |||
Sbjct: 823 ggtgaatcctggttcatggccattcggctgttctccactgggccatggtcgacagccgtt 764

                                                                       
Query: 267 cttaaagagtatatgactctgccaacaatatcagtcatagggacaggcccaaataagcgg 326
           |||||||||||||| ||||||||||  ||||||||||||||||| || ||||| ||||||
Sbjct: 763 cttaaagagtatatcactctgccaaggatatcagtcatagggactggtccaaacaagcgg 704

                                                                       
Query: 327 ctgtccctagcgtcctttgcctttagttcttggttatctgccatgacccagcattcgtcc 386
           || |||||||| ||||||| |||||||  |||||| |||||||  ||||||||||  |||
Sbjct: 703 ctatccctagcttcctttggctttagtgattggttgtctgccagaacccagcattgatcc 644

                                                                       
Query: 387 ttgtcaagtacaaagggctcatccttctcatcagtagagaccatctcatagccttgcacg 446
           |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||  | |
Sbjct: 643 ttgtcaagtacaaacggctcatccttctcatcattagagaccatctcataaccttctagg 584

                                                       
Query: 447 gcagccagtcgccggacaattaaatcatcggatttctctgggtc 490
           ||||||| ||| || || ||||||||||| ||||||||||||||
Sbjct: 583 gcagccaatcgtcgaacgattaaatcatcagatttctctgggtc 540
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>ref|XM_470956.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 621

 Score =  315 bits (159), Expect = 8e-83
 Identities = 294/339 (86%)
 Strand = Plus / Minus

                                                                       
Query: 152 ctacattttattgttcttcaccatctcttccacgtcgagctctaccgccaaaaccggtga 211
           ||||| |||||| |||||| ||||||||||||| || |||||||| |||| ||| |||||
Sbjct: 621 ctacactttattattcttcgccatctcttccacatcaagctctactgccagaactggtga 562

                                                                       
Query: 212 atcctggaacatggctacacggctgttgtccactggaccatgatcgacggcagttcttaa 271
           |||||||  |||||| |  |||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 561 atcctggttcatggccattcggctgttctccactgggccatggtcgacagccgttcttaa 502

                                                                       
Query: 272 agagtatatgactctgccaacaatatcagtcatagggacaggcccaaataagcggctgtc 331
           ||||||||| ||||||||||  ||||||||||||||||| || ||||| |||||||| ||
Sbjct: 501 agagtatatcactctgccaaggatatcagtcatagggactggtccaaacaagcggctatc 442

                                                                       
Query: 332 cctagcgtcctttgcctttagttcttggttatctgccatgacccagcattcgtccttgtc 391
           |||||| ||||||| |||||||  |||||| |||||||  ||||||||||  ||||||||
Sbjct: 441 cctagcttcctttggctttagtgattggttgtctgccagaacccagcattgatccttgtc 382

                                                                       
Query: 392 aagtacaaagggctcatccttctcatcagtagagaccatctcatagccttgcacggcagc 451
           ||||||||| |||||||||||||||||| |||||||||||||||| ||||  | ||||||
Sbjct: 381 aagtacaaacggctcatccttctcatcattagagaccatctcataaccttctagggcagc 322

                                                  
Query: 452 cagtcgccggacaattaaatcatcggatttctctgggtc 490
           || ||| || || ||||||||||| ||||||||||||||
Sbjct: 321 caatcgtcgaacgattaaatcatcagatttctctgggtc 283
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>gb|AY109846.1| Zea mays CL5362_2 mRNA sequence
          Length = 1355

 Score =  153 bits (77), Expect = 7e-34
 Identities = 185/221 (83%)
 Strand = Plus / Plus

                                                                       
Query: 297 tcagtcatagggacaggcccaaataagcggctgtccctagcgtcctttgcctttagttct 356
           |||||||| |||||||| ||||| |||||||| || ||||| ||||||| ||| ||  ||
Sbjct: 495 tcagtcattgggacaggtccaaacaagcggctatctctagcttcctttggcttaaggact 554

                                                                       
Query: 357 tggttatctgccatgacccagcattcgtccttgtcaagtacaaagggctcatccttctca 416
            |||| ||||||| ||||||||||| ||| || || || ||||| |||||||||||||||
Sbjct: 555 aggttgtctgccaggacccagcattggtctttctcgagcacaaacggctcatccttctca 614

                                                                       
Query: 417 tcagtagagaccatctcatagccttgcacggcagccagtcgccggacaattaaatcatcg 476
           ||| ||||||||||||||||||||| || |||||||||||| || | ||  ||||   | 
Sbjct: 615 tcattagagaccatctcatagccttccagggcagccagtcgtcgaataacaaaattgcca 674

                                                    
Query: 477 gatttctctgggtccttcaacaagacgatgtccccaacaaa 517
           |||||||||||||| || |||||||| | |||||| |||||
Sbjct: 675 gatttctctgggtcttttaacaagacaacgtccccgacaaa 715
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score =  149 bits (75), Expect = 1e-32
 Identities = 132/151 (87%)
 Strand = Plus / Plus

                                                                          
Query: 340    cctttgcctttagttcttggttatctgccatgacccagcattcgtccttgtcaagtacaa 399
              |||||| |||||||  |||||| |||||||  ||||||||||  ||||||||||||||||
Sbjct: 173812 cctttggctttagtgattggttgtctgccagaacccagcattgatccttgtcaagtacaa 173871

                                                                          
Query: 400    agggctcatccttctcatcagtagagaccatctcatagccttgcacggcagccagtcgcc 459
              | |||||||||||||||||| |||||||||||||||| ||||  | |||||||| ||| |
Sbjct: 173872 acggctcatccttctcatcattagagaccatctcataaccttctagggcagccaatcgtc 173931

                                             
Query: 460    ggacaattaaatcatcggatttctctgggtc 490
              | || ||||||||||| ||||||||||||||
Sbjct: 173932 gaacgattaaatcatcagatttctctgggtc 173962



 Score =  113 bits (57), Expect = 6e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                          
Query: 234    ctgttgtccactggaccatgatcgacggcagttcttaaagagtatatgactctgccaaca 293
              ||||| |||||||| ||||| ||||| || ||||||||||||||||| ||||||||||  
Sbjct: 173398 ctgttctccactgggccatggtcgacagccgttcttaaagagtatatcactctgccaagg 173457

                                                               
Query: 294    atatcagtcatagggacaggcccaaataagcggctgtccctagcgtcct 342
              ||||||||||||||||| || ||||| |||||||| |||||||| ||||
Sbjct: 173458 atatcagtcatagggactggtccaaacaagcggctatccctagcttcct 173506



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                          
Query: 147    attatctacattttattgttcttcaccatctcttccacgtcgagctctaccgccaaaacc 206
              |||||||||| |||||| |||||| ||||||||||||| || |||||||| |||| ||| 
Sbjct: 173215 attatctacactttattattcttcgccatctcttccacatcaagctctactgccagaact 173274

                                               
Query: 207    ggtgaatcctggaacatggctacacggctgttg 239
              ||||||||||||  |||||| |  |||||||||
Sbjct: 173275 ggtgaatcctggttcatggccattcggctgttg 173307
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>emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0068L06,
              complete sequence
          Length = 145517

 Score =  149 bits (75), Expect = 1e-32
 Identities = 132/151 (87%)
 Strand = Plus / Plus

                                                                          
Query: 340    cctttgcctttagttcttggttatctgccatgacccagcattcgtccttgtcaagtacaa 399
              |||||| |||||||  |||||| |||||||  ||||||||||  ||||||||||||||||
Sbjct: 105099 cctttggctttagtgattggttgtctgccagaacccagcattgatccttgtcaagtacaa 105158

                                                                          
Query: 400    agggctcatccttctcatcagtagagaccatctcatagccttgcacggcagccagtcgcc 459
              | |||||||||||||||||| |||||||||||||||| ||||  | |||||||| ||| |
Sbjct: 105159 acggctcatccttctcatcattagagaccatctcataaccttctagggcagccaatcgtc 105218

                                             
Query: 460    ggacaattaaatcatcggatttctctgggtc 490
              | || ||||||||||| ||||||||||||||
Sbjct: 105219 gaacgattaaatcatcagatttctctgggtc 105249



 Score =  113 bits (57), Expect = 6e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                          
Query: 234    ctgttgtccactggaccatgatcgacggcagttcttaaagagtatatgactctgccaaca 293
              ||||| |||||||| ||||| ||||| || ||||||||||||||||| ||||||||||  
Sbjct: 104685 ctgttctccactgggccatggtcgacagccgttcttaaagagtatatcactctgccaagg 104744

                                                               
Query: 294    atatcagtcatagggacaggcccaaataagcggctgtccctagcgtcct 342
              ||||||||||||||||| || ||||| |||||||| |||||||| ||||
Sbjct: 104745 atatcagtcatagggactggtccaaacaagcggctatccctagcttcct 104793



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                          
Query: 147    attatctacattttattgttcttcaccatctcttccacgtcgagctctaccgccaaaacc 206
              |||||||||| |||||| |||||| ||||||||||||| || |||||||| |||| ||| 
Sbjct: 104502 attatctacactttattattcttcgccatctcttccacatcaagctctactgccagaact 104561

                                               
Query: 207    ggtgaatcctggaacatggctacacggctgttg 239
              ||||||||||||  |||||| |  |||||||||
Sbjct: 104562 ggtgaatcctggttcatggccattcggctgttg 104594
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>emb|AL392003.11| Human DNA sequence from clone RP11-331H2 on chromosome 1 Containt the
             3' end of the HSD17B7 gene for hydroxysteroid (17-beta)
             dehydrogenase 7, a novel protein (MGC48998) and a
             cytochrome c oxidase subunit VIIb (COX7B) pseudogene,
             complete sequence
          Length = 191872

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 4     atgccttatttcttatgatgaa 25
             ||||||||||||||||||||||
Sbjct: 35385 atgccttatttcttatgatgaa 35364
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>gb|AC134503.2| Homo sapiens 3 BAC RP11-657G5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 73801

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 148   ttatctacattttattgttct 168
             |||||||||||||||||||||
Sbjct: 14337 ttatctacattttattgttct 14317
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>emb|AL355605.10| Human DNA sequence from clone RP11-456P14 on chromosome 13, complete
             sequence
          Length = 55142

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 276   tatatgactctgccaacaata 296
             |||||||||||||||||||||
Sbjct: 11287 tatatgactctgccaacaata 11307
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>gb|AC093829.2| Homo sapiens BAC clone RP11-401E5 from 4, complete sequence
          Length = 169483

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 148    ttatctacattttattgttcttcac 172
              |||| ||||||||||||||||||||
Sbjct: 149198 ttatatacattttattgttcttcac 149174
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>gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160095

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 145    ccattatctacattttattgttctt 169
              |||||||||||||||| ||||||||
Sbjct: 137091 ccattatctacatttttttgttctt 137115
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>gb|AC102775.6| Mus musculus chromosome 8, clone RP23-115C10, complete sequence
          Length = 185846

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 146    cattatctacattttattgttctt 169
              |||||| |||||||||||||||||
Sbjct: 129821 cattatttacattttattgttctt 129798
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>gb|BC103916.1| Homo sapiens tetratricopeptide repeat domain 6, mRNA (cDNA clone
          MGC:119361 IMAGE:40006183), complete cds
          Length = 1972

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 13 ttcttatgatgaaatattat 32
          ||||||||||||||||||||
Sbjct: 57 ttcttatgatgaaatattat 76
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>gb|BC103915.1| Homo sapiens tetratricopeptide repeat domain 6, mRNA (cDNA clone
          MGC:119360 IMAGE:40006182), complete cds
          Length = 1972

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 13 ttcttatgatgaaatattat 32
          ||||||||||||||||||||
Sbjct: 57 ttcttatgatgaaatattat 76
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>gb|BC103914.1| Homo sapiens tetratricopeptide repeat domain 6, mRNA (cDNA clone
          MGC:119358 IMAGE:40006180), complete cds
          Length = 2201

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 13 ttcttatgatgaaatattat 32
          ||||||||||||||||||||
Sbjct: 57 ttcttatgatgaaatattat 76
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>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    tattgttcttcaccatctct 179
              ||||||||||||||||||||
Sbjct: 483183 tattgttcttcaccatctct 483202
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>ref|NM_001007795.1| Homo sapiens tetratricopeptide repeat domain 6 (TTC6), mRNA
          Length = 1623

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 13 ttcttatgatgaaatattat 32
          ||||||||||||||||||||
Sbjct: 56 ttcttatgatgaaatattat 75
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>gb|AC009055.10| Homo sapiens chromosome 16 clone RP11-256I9, complete sequence
          Length = 170831

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    attatctacattttattgtt 166
              ||||||||||||||||||||
Sbjct: 149377 attatctacattttattgtt 149358
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>gb|AC113123.8| Mus musculus chromosome 8, clone RP23-349O15, complete sequence
          Length = 213829

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 146    cattatctacattttattgttctt 169
              |||||| |||||||||||||||||
Sbjct: 155283 cattatttacattttattgttctt 155306
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>emb|AL357312.8| Human DNA sequence from clone RP11-390F10 on chromosome Xq21.2-22.1
            Contains a eukaryotic translation elongation factor 1
            alpha 1 (EEF1A1) pseudogene and a high-mobility group box
            1 (HMGB1) pseudogene, complete sequence
          Length = 187469

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 9    ttatttcttatgatgaaata 28
            ||||||||||||||||||||
Sbjct: 5144 ttatttcttatgatgaaata 5163
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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 441     tgcacggcagccagtcgccg 460
               ||||||||||||||||||||
Sbjct: 3859530 tgcacggcagccagtcgccg 3859511
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>gb|AC171242.2| Gallus gallus BAC clone CH261-59O7 from chromosome ul, complete sequence
          Length = 191648

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    gtcctttgcctttagttctt 357
              ||||||||||||||||||||
Sbjct: 176529 gtcctttgcctttagttctt 176548
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>gb|AC025577.15| Homo sapiens 12 BAC RP11-13C3 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 154090

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 13   ttcttatgatgaaatattat 32
            ||||||||||||||||||||
Sbjct: 6989 ttcttatgatgaaatattat 7008
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>gb|AC146881.3| Otolemur garnettii clone CH256-571D18, complete sequence
          Length = 240447

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    tattgttcttcaccatctct 179
              ||||||||||||||||||||
Sbjct: 159906 tattgttcttcaccatctct 159925
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>gb|AC154637.2| Mus musculus BAC clone RP23-303N14 from chromosome 14, complete
             sequence
          Length = 198799

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   cagtcatagggacaggccca 317
             ||||||||||||||||||||
Sbjct: 97912 cagtcatagggacaggccca 97931
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>gb|AC171011.2| Gallus gallus BAC clone CH261-112C5 from chromosome ul, complete sequence
          Length = 230767

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    gtcctttgcctttagttctt 357
              ||||||||||||||||||||
Sbjct: 129308 gtcctttgcctttagttctt 129327
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>emb|AL136296.3|CNS01DW0 Human chromosome 14 DNA sequence BAC R-588D7 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 192404

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     ttcttatgatgaaatattat 32
              ||||||||||||||||||||
Sbjct: 176440 ttcttatgatgaaatattat 176459
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>emb|BX161415.1|CNSLT1I83 human full-length cDNA clone CS0DD003YF17 of Neuroblastoma of Homo
           sapiens (human)
          Length = 2253

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 13  ttcttatgatgaaatattat 32
           ||||||||||||||||||||
Sbjct: 283 ttcttatgatgaaatattat 302
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>gb|AC170155.2| Phakopsora pachyrhizi clone JGIAFNA-1989A17, complete sequence
          Length = 40775

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    ttatgatgaaatattattgg 35
             ||||||||||||||||||||
Sbjct: 24929 ttatgatgaaatattattgg 24948
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>emb|CT485787.6| Mouse DNA sequence from clone RP23-412N8 on chromosome 14, complete
              sequence
          Length = 210837

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    cagtcatagggacaggccca 317
              ||||||||||||||||||||
Sbjct: 169197 cagtcatagggacaggccca 169216


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,656,834
Number of Sequences: 3902068
Number of extensions: 4656834
Number of successful extensions: 80374
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80282
Number of HSP's gapped (non-prelim): 92
length of query: 554
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 531
effective length of database: 17,143,297,704
effective search space: 9103091080824
effective search space used: 9103091080824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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