ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5k16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467632.1| Oryza sativa (japonica cultivar-group), mRNA 272 1e-69
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
3dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
4dbj|AK102091.1| Oryza sativa (japonica cultivar-group) cDNA clon... 272 1e-69
5emb|AL358552.19| Human DNA sequence from clone RP11-10O5 on chro... 46 0.13
6gb|AC022746.10| Homo sapiens chromosome 10, clone RP11-567F2, co... 46 0.13
7gb|AC013280.6| Homo sapiens BAC clone RP11-519F14 from 2, comple... 46 0.13
8gb|AC115742.13| Mus musculus chromosome 7, clone RP23-477E13, co... 42 2.1
9gb|AC159534.11| Medicago truncatula clone mth2-81a23, complete s... 42 2.1
10gb|AC149127.6| Medicago truncatula clone mth2-108o17, complete s... 42 2.1
11gb|AF321827.1|AF321827 Danio rerio beta-3-galactosyltransferase ... 42 2.1
12ref|NM_201294.1| Danio rerio UDP-GlcNAc:betaGal beta-1,3-N-acety... 42 2.1
13gb|AC110551.9| Mus musculus chromosome 7, clone RP23-245P16, com... 42 2.1
14ref|XM_523315.1| PREDICTED: Pan troglodytes similar to ATP-bindi... 40 8.2
15gb|AC135957.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
16gb|AC034254.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 8.2
17ref|XM_645350.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 8.2
18emb|AL590542.4| Human DNA sequence from clone RP11-135F12 on chr... 40 8.2
19emb|AL583860.7| Human DNA sequence from clone RP11-16P8 on chrom... 40 8.2
20emb|AL391422.17| Human DNA sequence from clone RP11-420L9 on chr... 40 8.2
21emb|AL353684.8| Human DNA sequence from clone RP11-275A14 on chr... 40 8.2
22emb|AL158159.14| Human DNA sequence from clone RP11-498N2 on chr... 40 8.2
23emb|AL157786.13| Human DNA sequence from clone RP11-324O2 on chr... 40 8.2
24emb|AL138682.13| Human DNA sequence from clone RP11-138D23 on ch... 40 8.2
25emb|AL049552.20|HSJ388E23 Human DNA sequence from clone RP3-388E... 40 8.2
26emb|AL929301.6| Zebrafish DNA sequence from clone BUSM1-SL7 Cont... 40 8.2
27emb|BX901922.9| Zebrafish DNA sequence from clone DKEY-33C12 in ... 40 8.2
28emb|CR931735.1| Medicago truncatula chromosome 5 clone mth2-37f4... 40 8.2
29emb|CR376858.7| Zebrafish DNA sequence from clone CH211-87A2 in ... 40 8.2
30gb|AC008759.9| Homo sapiens chromosome 19 clone CTD-3116E22, com... 40 8.2
31gb|AC008752.6| Homo sapiens chromosome 19 clone CTD-2623N2, comp... 40 8.2
32gb|AC092940.6| Homo sapiens 3 BAC RP11-128L14 (Roswell Park Canc... 40 8.2
33gb|AC012598.16| Homo sapiens 3 BAC RP11-237K10 (Roswell Park Can... 40 8.2
34gb|AC025479.8| Homo sapiens chromosome 8, clone RP11-358J8, comp... 40 8.2
35gb|AC009927.10| Homo sapiens chromosome 8, clone RP11-114M5, com... 40 8.2
36gb|AC069542.7| Homo sapiens chromosome 10 clone RP11-390B4, comp... 40 8.2
37gb|AC090376.6| Homo sapiens chromosome 18, clone RP11-846C15, co... 40 8.2
38gb|AC016245.8| Homo sapiens chromosome 17, clone RP11-28G8, comp... 40 8.2
39gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, c... 40 8.2
40gb|AC112031.4| Rattus norvegicus BAC CH230-99K18 (Children's Ho... 40 8.2
41gb|AC018626.8| Homo sapiens chromosome 18, clone RP11-678P20, co... 40 8.2
42gb|AC012238.7| Homo sapiens, clone RP11-16F4, complete sequence 40 8.2
43emb|BX548044.10| Zebrafish DNA sequence from clone DKEY-10B15 in... 40 8.2
44emb|BX784038.11| Zebrafish DNA sequence from clone CH211-217K23 ... 40 8.2
45gb|AC162178.2| Mus musculus BAC clone RP23-410H21 from chromosom... 40 8.2
46gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, co... 40 8.2
47dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
48gb|AC016993.4|AC016993 Homo sapiens clone RP11-18J9, complete se... 40 8.2
49gb|AC078931.9|AC078931 Mus musculus BAC RP23-419E4 (Roswell Par... 40 8.2
50gb|AC079142.15| Homo sapiens X BAC RP11-657D19 (Roswell Park Can... 40 8.2
51emb|BX470223.14| Zebrafish DNA sequence from clone DKEY-45P9 in ... 40 8.2
52dbj|AK218666.1| Mus musculus cDNA, clone:Y2G0145O13, strand:plus... 40 8.2
53emb|AL136501.4|CNS01DW8 Human chromosome 14 DNA sequence BAC R-8... 40 8.2
54dbj|AP000828.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.2
55gb|AC121101.8| Mus musculus chromosome 8, clone RP24-511A8, comp... 40 8.2
56dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.2
57emb|CR847940.9| Zebrafish DNA sequence from clone CH211-250O24 i... 40 8.2
58emb|AL929156.10| Mouse DNA sequence from clone RP23-475H18 on ch... 40 8.2
59gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome 40 8.2
60emb|AL954671.8| Zebrafish DNA sequence from clone DKEY-180B4 in ... 40 8.2
61gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
62emb|CR376825.16| Zebrafish DNA sequence from clone CH211-136O20 ... 40 8.2
63emb|CT030713.5| Mouse DNA sequence from clone RP24-94C21 on chro... 40 8.2
64emb|AL929534.12| Mouse DNA sequence from clone RP23-275L13 on ch... 40 8.2
65gb|AC171203.1| Mus musculus BAC clone RP24-260O23 from chromosom... 40 8.2 
>ref|XM_467632.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2338

 Score =  272 bits (137), Expect = 1e-69
 Identities = 250/288 (86%)
 Strand = Plus / Minus

                                                                        
Query: 310  ttagagcacctgcaacttactgagatgctccaggagagaggtcgccttgcgcttggctct 369
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2077 ttagagcacctgcaacttactgagatgctccaggagagaggttgccttgcgcttggctct 2018

                                                                        
Query: 370  gtccgagccggtcttggacagctccgttaatggtatttgagcacccagcctccctatgca 429
            ||| | |||||||||||||||||| |||| ||||||||||||||||| ||||||||| ||
Sbjct: 2017 gtctgtgccggtcttggacagctcagttagtggtatttgagcacccaacctccctataca 1958

                                                                        
Query: 430  agcgagattctgggcgtccttcttgcagagtgcaagtaaaatagccgcggcattctcctt 489
            |||||| ||||  || ||||||||||| || ||||| || || || || |||||||||||
Sbjct: 1957 agcgaggttctcagcatccttcttgcaaagggcaagcaagatggctgcagcattctcctt 1898

                                                                        
Query: 490  gttacgggcctggcttgatcttaacaaatcgatcaagaaggggatggtgtgagccttggc 549
            |||||||||||| ||||| || ||||| || ||||| ||||| || |  |||||||| ||
Sbjct: 1897 gttacgggcctgacttgacctcaacaagtctatcaaaaagggtatagcatgagccttcgc 1838

                                                            
Query: 550  tatggctgttttgcactcgtggtgactcacgangaccgacaagattgt 597
            ||||||  |||| ||||| ||||| ||||| |  || |||||||||||
Sbjct: 1837 tatggcaattttacactcatggtggctcacaagaactgacaagattgt 1790



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 223  ttcacacgcaataacagatgagtttacaacttctcgtatgtata 266
            ||||||| | |||| ||||||| ||||| ||| |||||||||||
Sbjct: 2173 ttcacactctataagagatgaggttacagcttttcgtatgtata 2130
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  272 bits (137), Expect = 1e-69
 Identities = 250/288 (86%)
 Strand = Plus / Minus

                                                                            
Query: 310      ttagagcacctgcaacttactgagatgctccaggagagaggtcgccttgcgcttggctct 369
                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 30540647 ttagagcacctgcaacttactgagatgctccaggagagaggttgccttgcgcttggctct 30540588

                                                                            
Query: 370      gtccgagccggtcttggacagctccgttaatggtatttgagcacccagcctccctatgca 429
                ||| | |||||||||||||||||| |||| ||||||||||||||||| ||||||||| ||
Sbjct: 30540587 gtctgtgccggtcttggacagctcagttagtggtatttgagcacccaacctccctataca 30540528

                                                                            
Query: 430      agcgagattctgggcgtccttcttgcagagtgcaagtaaaatagccgcggcattctcctt 489
                |||||| ||||  || ||||||||||| || ||||| || || || || |||||||||||
Sbjct: 30540527 agcgaggttctcagcatccttcttgcaaagggcaagcaagatggctgcagcattctcctt 30540468

                                                                            
Query: 490      gttacgggcctggcttgatcttaacaaatcgatcaagaaggggatggtgtgagccttggc 549
                |||||||||||| ||||| || ||||| || ||||| ||||| || |  |||||||| ||
Sbjct: 30540467 gttacgggcctgacttgacctcaacaagtctatcaaaaagggtatagcatgagccttcgc 30540408

                                                                
Query: 550      tatggctgttttgcactcgtggtgactcacgangaccgacaagattgt 597
                ||||||  |||| ||||| ||||| ||||| |  || |||||||||||
Sbjct: 30540407 tatggcaattttacactcatggtggctcacaagaactgacaagattgt 30540360



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                            
Query: 223      ttcacacgcaataacagatgagtttacaacttctcgtatgtata 266
                ||||||| | |||| ||||||| ||||| ||| |||||||||||
Sbjct: 30540743 ttcacactctataagagatgaggttacagcttttcgtatgtata 30540700
to top
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0643A10
          Length = 187931

 Score =  272 bits (137), Expect = 1e-69
 Identities = 250/288 (86%)
 Strand = Plus / Minus

                                                                         
Query: 310   ttagagcacctgcaacttactgagatgctccaggagagaggtcgccttgcgcttggctct 369
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 52655 ttagagcacctgcaacttactgagatgctccaggagagaggttgccttgcgcttggctct 52596

                                                                         
Query: 370   gtccgagccggtcttggacagctccgttaatggtatttgagcacccagcctccctatgca 429
             ||| | |||||||||||||||||| |||| ||||||||||||||||| ||||||||| ||
Sbjct: 52595 gtctgtgccggtcttggacagctcagttagtggtatttgagcacccaacctccctataca 52536

                                                                         
Query: 430   agcgagattctgggcgtccttcttgcagagtgcaagtaaaatagccgcggcattctcctt 489
             |||||| ||||  || ||||||||||| || ||||| || || || || |||||||||||
Sbjct: 52535 agcgaggttctcagcatccttcttgcaaagggcaagcaagatggctgcagcattctcctt 52476

                                                                         
Query: 490   gttacgggcctggcttgatcttaacaaatcgatcaagaaggggatggtgtgagccttggc 549
             |||||||||||| ||||| || ||||| || ||||| ||||| || |  |||||||| ||
Sbjct: 52475 gttacgggcctgacttgacctcaacaagtctatcaaaaagggtatagcatgagccttcgc 52416

                                                             
Query: 550   tatggctgttttgcactcgtggtgactcacgangaccgacaagattgt 597
             ||||||  |||| ||||| ||||| ||||| |  || |||||||||||
Sbjct: 52415 tatggcaattttacactcatggtggctcacaagaactgacaagattgt 52368



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 223   ttcacacgcaataacagatgagtttacaacttctcgtatgtata 266
             ||||||| | |||| ||||||| ||||| ||| |||||||||||
Sbjct: 52751 ttcacactctataagagatgaggttacagcttttcgtatgtata 52708
to top
>dbj|AK102091.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082P22, full
            insert sequence
          Length = 2339

 Score =  272 bits (137), Expect = 1e-69
 Identities = 250/288 (86%)
 Strand = Plus / Minus

                                                                        
Query: 310  ttagagcacctgcaacttactgagatgctccaggagagaggtcgccttgcgcttggctct 369
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2077 ttagagcacctgcaacttactgagatgctccaggagagaggttgccttgcgcttggctct 2018

                                                                        
Query: 370  gtccgagccggtcttggacagctccgttaatggtatttgagcacccagcctccctatgca 429
            ||| | |||||||||||||||||| |||| ||||||||||||||||| ||||||||| ||
Sbjct: 2017 gtctgtgccggtcttggacagctcagttagtggtatttgagcacccaacctccctataca 1958

                                                                        
Query: 430  agcgagattctgggcgtccttcttgcagagtgcaagtaaaatagccgcggcattctcctt 489
            |||||| ||||  || ||||||||||| || ||||| || || || || |||||||||||
Sbjct: 1957 agcgaggttctcagcatccttcttgcaaagggcaagcaagatggctgcagcattctcctt 1898

                                                                        
Query: 490  gttacgggcctggcttgatcttaacaaatcgatcaagaaggggatggtgtgagccttggc 549
            |||||||||||| ||||| || ||||| || ||||| ||||| || |  |||||||| ||
Sbjct: 1897 gttacgggcctgacttgacctcaacaagtctatcaaaaagggtatagcatgagccttcgc 1838

                                                            
Query: 550  tatggctgttttgcactcgtggtgactcacgangaccgacaagattgt 597
            ||||||  |||| ||||| ||||| ||||| |  || |||||||||||
Sbjct: 1837 tatggcaattttacactcatggtggctcacaagaactgacaagattgt 1790



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 223  ttcacacgcaataacagatgagtttacaacttctcgtatgtata 266
            ||||||| | |||| ||||||| ||||| ||| |||||||||||
Sbjct: 2173 ttcacactctataagagatgaggttacagcttttcgtatgtata 2130
to top
>emb|AL358552.19| Human DNA sequence from clone RP11-10O5 on chromosome 10, complete
             sequence
          Length = 164142

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 82    aaaactaaaaggcataaatgaaa 104
             |||||||||||||||||||||||
Sbjct: 42548 aaaactaaaaggcataaatgaaa 42526
to top
>gb|AC022746.10| Homo sapiens chromosome 10, clone RP11-567F2, complete sequence
          Length = 168998

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 82     aaaactaaaaggcataaatgaaa 104
              |||||||||||||||||||||||
Sbjct: 119325 aaaactaaaaggcataaatgaaa 119347
to top
>gb|AC013280.6| Homo sapiens BAC clone RP11-519F14 from 2, complete sequence
          Length = 175047

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 82    aaaactaaaaggcataaatgaaa 104
             |||||||||||||||||||||||
Sbjct: 14850 aaaactaaaaggcataaatgaaa 14872
to top
>gb|AC115742.13| Mus musculus chromosome 7, clone RP23-477E13, complete sequence
          Length = 186195

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 24     aaaacaaaaaagtcatgaata 44
              |||||||||||||||||||||
Sbjct: 145319 aaaacaaaaaagtcatgaata 145339
to top
>gb|AC159534.11| Medicago truncatula clone mth2-81a23, complete sequence
          Length = 120504

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 20     ctgcaaaacaaaaaagtcatg 40
              |||||||||||||||||||||
Sbjct: 106086 ctgcaaaacaaaaaagtcatg 106106
to top
>gb|AC149127.6| Medicago truncatula clone mth2-108o17, complete sequence
          Length = 92727

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    ctgcaaaacaaaaaagtcatg 40
             |||||||||||||||||||||
Sbjct: 12737 ctgcaaaacaaaaaagtcatg 12757
to top
>gb|AF321827.1|AF321827 Danio rerio beta-3-galactosyltransferase (ssp1) mRNA, complete cds
          Length = 2260

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 13   tgataggctgcaaaacaaaaa 33
            |||||||||||||||||||||
Sbjct: 1896 tgataggctgcaaaacaaaaa 1916
to top
>ref|NM_201294.1| Danio rerio UDP-GlcNAc:betaGal
            beta-1,3-N-acetylglucosaminyltransferase 7 (b3gnt7), mRNA
          Length = 2260

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 13   tgataggctgcaaaacaaaaa 33
            |||||||||||||||||||||
Sbjct: 1896 tgataggctgcaaaacaaaaa 1916
to top
>gb|AC110551.9| Mus musculus chromosome 7, clone RP23-245P16, complete sequence
          Length = 155691

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    aaaacaaaaaagtcatgaata 44
             |||||||||||||||||||||
Sbjct: 31921 aaaacaaaaaagtcatgaata 31941
to top
>ref|XM_523315.1| PREDICTED: Pan troglodytes similar to ATP-binding cassette
            transporter sub-family A member 15 (LOC467922), mRNA
          Length = 3201

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 168  agccatcaatgaacacatct 187
            ||||||||||||||||||||
Sbjct: 2164 agccatcaatgaacacatct 2145
to top
>gb|AC135957.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0037P02
              map E61794SA, complete sequence
          Length = 131645

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    caacagattcagattcagca 147
              ||||||||||||||||||||
Sbjct: 108764 caacagattcagattcagca 108745
to top
>gb|AC034254.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-257K10, complete
             sequence
          Length = 116022

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   acttactgagatgctccagg 343
             ||||||||||||||||||||
Sbjct: 68662 acttactgagatgctccagg 68643
to top
>ref|XM_645350.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (219.t00009)
           partial mRNA
          Length = 651

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 agatgagtttacaacttctc 257
           ||||||||||||||||||||
Sbjct: 195 agatgagtttacaacttctc 214
to top
>emb|AL590542.4| Human DNA sequence from clone RP11-135F12 on chromosome 6, complete
             sequence
          Length = 43345

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    taaaactaaaaggcataaatgaaa 104
             ||||||||||||||| ||||||||
Sbjct: 35363 taaaactaaaaggcagaaatgaaa 35340
to top
>emb|AL583860.7| Human DNA sequence from clone RP11-16P8 on chromosome 10 Contains the
             5' end of a novel gene, complete sequence
          Length = 87845

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    aaaactaaaaggcataaatgaaac 105
             |||||||||||||| |||||||||
Sbjct: 71227 aaaactaaaaggcagaaatgaaac 71204
to top
>emb|AL391422.17| Human DNA sequence from clone RP11-420L9 on chromosome 6 Contains the
             5' end of a novel gene, a novel pseudogene, the gene for
             XAP-5-like protein (X5L) (DNA segment on chromosome 6
             (unique) 2654 expressed sequence) (D6S2654E) a novel gene
             and CpG islands, complete sequence
          Length = 138221

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 80    ttaaaactaaaaggcataaatgaaactt 107
             ||||||||||| | ||||||||||||||
Sbjct: 83199 ttaaaactaaatgacataaatgaaactt 83226
to top
>emb|AL353684.8| Human DNA sequence from clone RP11-275A14 on chromosome 9, complete
              sequence
          Length = 110462

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     gcataaatgaaactttgtgc 112
              ||||||||||||||||||||
Sbjct: 109342 gcataaatgaaactttgtgc 109361
to top
>emb|AL158159.14| Human DNA sequence from clone RP11-498N2 on chromosome 9 Contains the
             3' end of the CHAC gene for chorea acanthocytosis, the 3'
             end of the GNA14 gene for guanine nucleotide binding
             protein (G protein) alpha 14 and the 5' end of a novel
             gene, complete sequence
          Length = 167006

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    attaaaactaaaaggcataa 98
             ||||||||||||||||||||
Sbjct: 28074 attaaaactaaaaggcataa 28055
to top
>emb|AL157786.13| Human DNA sequence from clone RP11-324O2 on chromosome 10 Contains a
             guanylate cyclase type protein pseudogene, the 5' end of
             the FACL5 for long-chain 5 fatty-acid-Coenzyme A ligase, a
             novel gene, the 3' end of a novel gene and a CpG island,
             complete sequence
          Length = 122591

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   agatgctccaggagagaggt 351
             ||||||||||||||||||||
Sbjct: 60886 agatgctccaggagagaggt 60867
to top
>emb|AL138682.13| Human DNA sequence from clone RP11-138D23 on chromosome 13 Contains the
             3' end of a novel gene and 2 novel genes, complete
             sequence
          Length = 164604

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    aaaactaaaaggcataaatg 101
             ||||||||||||||||||||
Sbjct: 18770 aaaactaaaaggcataaatg 18789
to top
>emb|AL049552.20|HSJ388E23 Human DNA sequence from clone RP3-388E23 on chromosome 6q22.33-24.1
             Contains part of the gene for a novel protein, a novel
             gene and a CpG Island, complete sequence
          Length = 98828

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    gataggctgcaaaacaaaaa 33
             ||||||||||||||||||||
Sbjct: 72847 gataggctgcaaaacaaaaa 72866
to top
>emb|AL929301.6| Zebrafish DNA sequence from clone BUSM1-SL7 Contains two genes for
             novel serine proteases, a novel serine protease
             pseudogene, three genes similar to vertebrate PIM1 (pim-1
             oncogene), a putative novel gene and a CpG island,
             complete sequence
          Length = 64032

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    aacaattttcttctattaaa 84
             ||||||||||||||||||||
Sbjct: 47782 aacaattttcttctattaaa 47763



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    aacaattttcttctattaaa 84
             ||||||||||||||||||||
Sbjct: 31927 aacaattttcttctattaaa 31908
to top
>emb|BX901922.9| Zebrafish DNA sequence from clone DKEY-33C12 in linkage group 13,
              complete sequence
          Length = 242350

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     aacaattttcttctattaaa 84
              ||||||||||||||||||||
Sbjct: 145561 aacaattttcttctattaaa 145542
to top
>emb|CR931735.1| Medicago truncatula chromosome 5 clone mth2-37f4, COMPLETE SEQUENCE
          Length = 114414

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    tttcttctattaaaactaaa 90
             ||||||||||||||||||||
Sbjct: 39479 tttcttctattaaaactaaa 39460
to top
>emb|CR376858.7| Zebrafish DNA sequence from clone CH211-87A2 in linkage group 8,
            complete sequence
          Length = 165716

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 65   aacaattttcttctattaaa 84
            ||||||||||||||||||||
Sbjct: 9779 aacaattttcttctattaaa 9760
to top
>gb|AC008759.9| Homo sapiens chromosome 19 clone CTD-3116E22, complete sequence
          Length = 206395

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 82     aaaactaaaaggcataaatgaaac 105
              |||||||||||||| |||||||||
Sbjct: 183571 aaaactaaaaggcagaaatgaaac 183548
to top
>gb|AC008752.6| Homo sapiens chromosome 19 clone CTD-2623N2, complete sequence
          Length = 138036

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 82     aaaactaaaaggcataaatgaaac 105
              |||||||||||||| |||||||||
Sbjct: 124233 aaaactaaaaggcagaaatgaaac 124256
to top
>gb|AC092940.6| Homo sapiens 3 BAC RP11-128L14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164805

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    aaaactaaaaggcataaatgaaac 105
             |||||||||||||| |||||||||
Sbjct: 27424 aaaactaaaaggcagaaatgaaac 27401
to top
>gb|AC012598.16| Homo sapiens 3 BAC RP11-237K10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 163538

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 82    aaaactaaaaggcataaatgaaac 105
             |||||||||||||| |||||||||
Sbjct: 48652 aaaactaaaaggcagaaatgaaac 48675
to top
>gb|AC025479.8| Homo sapiens chromosome 8, clone RP11-358J8, complete sequence
          Length = 176647

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 82     aaaactaaaaggcataaatgaaac 105
              |||||||||||||| |||||||||
Sbjct: 140426 aaaactaaaaggcagaaatgaaac 140403
to top
>gb|AC009927.10| Homo sapiens chromosome 8, clone RP11-114M5, complete sequence
          Length = 166985

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 82    aaaactaaaaggcataaatgaaac 105
             |||||||||||||| |||||||||
Sbjct: 75660 aaaactaaaaggcagaaatgaaac 75683
to top
>gb|AC069542.7| Homo sapiens chromosome 10 clone RP11-390B4, complete sequence
          Length = 166509

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 81     taaaactaaaaggcataaatgaaa 104
              ||||||||||||||| ||||||||
Sbjct: 148341 taaaactaaaaggcagaaatgaaa 148318
to top
>gb|AC090376.6| Homo sapiens chromosome 18, clone RP11-846C15, complete sequence
          Length = 206399

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 82     aaaactaaaaggcataaatgaaac 105
              |||||||||||||| |||||||||
Sbjct: 115384 aaaactaaaaggcagaaatgaaac 115407
to top
>gb|AC016245.8| Homo sapiens chromosome 17, clone RP11-28G8, complete sequence
          Length = 163042

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 70    ttttcttctattaaaactaaaaggcata 97
             |||||||||| ||| |||||||||||||
Sbjct: 52428 ttttcttctaataatactaaaaggcata 52455
to top
>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence
          Length = 175840

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     gcataaatgaaactttgtgc 112
              ||||||||||||||||||||
Sbjct: 117949 gcataaatgaaactttgtgc 117968
to top
>gb|AC112031.4| Rattus norvegicus  BAC CH230-99K18 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 242158

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 11     actgataggctgcaaaacaaaaaa 34
              ||||||||||||||||| ||||||
Sbjct: 170257 actgataggctgcaaaagaaaaaa 170234
to top
>gb|AC018626.8| Homo sapiens chromosome 18, clone RP11-678P20, complete sequence
          Length = 200204

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 82     aaaactaaaaggcataaatgaaac 105
              |||||||||||||| |||||||||
Sbjct: 122247 aaaactaaaaggcagaaatgaaac 122270
to top
>gb|AC012238.7| Homo sapiens, clone RP11-16F4, complete sequence
          Length = 156834

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    aaaactaaaaggcataaatgaaac 105
             |||||||||||||| |||||||||
Sbjct: 48978 aaaactaaaaggcagaaatgaaac 48955
to top
>emb|BX548044.10| Zebrafish DNA sequence from clone DKEY-10B15 in linkage group 10,
              complete sequence
          Length = 250011

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     aacaattttcttctattaaa 84
              ||||||||||||||||||||
Sbjct: 109795 aacaattttcttctattaaa 109814
to top
>emb|BX784038.11| Zebrafish DNA sequence from clone CH211-217K23 in linkage group 10,
              complete sequence
          Length = 195221

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     aacaattttcttctattaaa 84
              ||||||||||||||||||||
Sbjct: 187500 aacaattttcttctattaaa 187519



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     aacaattttcttctattaaa 84
              ||||||||||||||||||||
Sbjct: 167705 aacaattttcttctattaaa 167724



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     aacaattttcttctattaaa 84
              ||||||||||||||||||||
Sbjct: 150585 aacaattttcttctattaaa 150604



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     aacaattttcttctattaaa 84
              ||||||||||||||||||||
Sbjct: 111684 aacaattttcttctattaaa 111703
to top
>gb|AC162178.2| Mus musculus BAC clone RP23-410H21 from chromosome 6, complete sequence
          Length = 188061

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   acttactgagatgctccagg 343
             ||||||||||||||||||||
Sbjct: 65782 acttactgagatgctccagg 65763
to top
>gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, complete sequence
          Length = 233089

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    taaaactaaaaggcataaatgaaa 104
             ||||||||||||||| ||||||||
Sbjct: 48557 taaaactaaaaggcagaaatgaaa 48580
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 128     caacagattcagattcagca 147
               ||||||||||||||||||||
Sbjct: 9555581 caacagattcagattcagca 9555562
to top
>gb|AC016993.4|AC016993 Homo sapiens clone RP11-18J9, complete sequence
          Length = 172241

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 81     taaaactaaaaggcataaatgaaa 104
              ||||||||||||||| ||||||||
Sbjct: 118258 taaaactaaaaggcagaaatgaaa 118281
to top
>gb|AC078931.9|AC078931 Mus musculus  BAC RP23-419E4 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 188750

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    aggcataaatgaaactttgt 110
             ||||||||||||||||||||
Sbjct: 67139 aggcataaatgaaactttgt 67158
to top
>gb|AC079142.15| Homo sapiens X BAC RP11-657D19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162639

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 82     aaaactaaaaggcataaatgaaac 105
              |||||||||||||| |||||||||
Sbjct: 146935 aaaactaaaaggcagaaatgaaac 146912
to top
>emb|BX470223.14| Zebrafish DNA sequence from clone DKEY-45P9 in linkage group 10, complete
              sequence
          Length = 247644

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     aacaattttcttctattaaa 84
              ||||||||||||||||||||
Sbjct: 193606 aacaattttcttctattaaa 193587
to top
>dbj|AK218666.1| Mus musculus cDNA, clone:Y2G0145O13, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000029315, based on BLAT search
          Length = 179

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 554 gctgttttgcactcgtggtg 573
           ||||||||||||||||||||
Sbjct: 86  gctgttttgcactcgtggtg 105
to top
>emb|AL136501.4|CNS01DW8 Human chromosome 14 DNA sequence BAC R-804L24 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 180583

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 82    aaaactaaaaggcataaatgaaac 105
             |||||||||||||| |||||||||
Sbjct: 13500 aaaactaaaaggcagaaatgaaac 13523
to top
>dbj|AP000828.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-730K20, complete
             sequence
          Length = 61993

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    taaaactaaaaggcataaatgaaa 104
             ||||||||||||||| ||||||||
Sbjct: 61374 taaaactaaaaggcagaaatgaaa 61397
to top
>gb|AC121101.8| Mus musculus chromosome 8, clone RP24-511A8, complete sequence
          Length = 158957

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     aaaactaaaaggcataaatg 101
              ||||||||||||||||||||
Sbjct: 121269 aaaactaaaaggcataaatg 121288
to top
>dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867O8, complete
            sequence
          Length = 219246

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 81   taaaactaaaaggcataaatgaaa 104
            ||||||||||||||| ||||||||
Sbjct: 1476 taaaactaaaaggcagaaatgaaa 1499
to top
>emb|CR847940.9| Zebrafish DNA sequence from clone CH211-250O24 in linkage group 11,
            complete sequence
          Length = 102840

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   aacaattttcttctattaaa 84
            ||||||||||||||||||||
Sbjct: 5172 aacaattttcttctattaaa 5191
to top
>emb|AL929156.10| Mouse DNA sequence from clone RP23-475H18 on chromosome 2, complete
              sequence
          Length = 206918

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 97     aaatgaaactttgtgcagatgaga 120
              ||||||||||||| ||||||||||
Sbjct: 119775 aaatgaaactttgggcagatgaga 119798
to top
>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome
          Length = 892758

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 123    agaaacaacagattcagattcagcaaca 150
              |||||||||| ||||| |||||||||||
Sbjct: 862656 agaaacaacaaattcaaattcagcaaca 862629
to top
>emb|AL954671.8| Zebrafish DNA sequence from clone DKEY-180B4 in linkage group 1,
             complete sequence
          Length = 142357

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    aacaattttcttctattaaa 84
             ||||||||||||||||||||
Sbjct: 91985 aacaattttcttctattaaa 92004
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 128     caacagattcagattcagca 147
               ||||||||||||||||||||
Sbjct: 9627278 caacagattcagattcagca 9627259
to top
>emb|CR376825.16| Zebrafish DNA sequence from clone CH211-136O20 in linkage group 14,
             complete sequence
          Length = 176973

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    aacaattttcttctattaaa 84
             ||||||||||||||||||||
Sbjct: 91011 aacaattttcttctattaaa 91030
to top
>emb|CT030713.5| Mouse DNA sequence from clone RP24-94C21 on chromosome 17, complete
              sequence
          Length = 190764

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     aggcataaatgaaactttgt 110
              ||||||||||||||||||||
Sbjct: 149374 aggcataaatgaaactttgt 149393
to top
>emb|AL929534.12| Mouse DNA sequence from clone RP23-275L13 on chromosome 2, complete
              sequence
          Length = 190466

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 201    acctcaacaccagcccactacttt 224
              |||||||| |||||||||||||||
Sbjct: 151002 acctcaaccccagcccactacttt 151025
to top
>gb|AC171203.1| Mus musculus BAC clone RP24-260O23 from chromosome 9, complete sequence
          Length = 171374

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     taaaactaaaaggcataaat 100
              ||||||||||||||||||||
Sbjct: 135589 taaaactaaaaggcataaat 135608


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,096,511
Number of Sequences: 3902068
Number of extensions: 6096511
Number of successful extensions: 111446
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111222
Number of HSP's gapped (non-prelim): 224
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top