ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5k11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY110545.1| Zea mays CL31325_1 mRNA sequence 90 1e-14
2ref|XM_467761.1| Oryza sativa (japonica cultivar-group), mRNA 54 6e-04
3dbj|AK099676.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 6e-04
4gb|AC144928.17| Medicago truncatula clone mth2-8a18, complete se... 46 0.15
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.15
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.15
7dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.15
8dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.15
9dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.15
10gb|AC100956.9| Mus musculus chromosome 7, clone RP23-74B10, comp... 46 0.15
11gb|AC133709.11| Medicago truncatula clone mth2-7b3, complete seq... 46 0.15
12emb|BX548059.13| Zebrafish DNA sequence from clone DKEYP-80D11 i... 42 2.3
13dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
15dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
16dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
17dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
18dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
19emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 42 2.3
20gb|AC168060.4| Mus musculus BAC clone RP23-305A9 from chromosome... 40 9.0
21ref|NM_125466.3| Arabidopsis thaliana ATP binding AT5G60730 mRNA... 40 9.0
22gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
23ref|XM_515290.1| PREDICTED: Pan troglodytes similar to developme... 40 9.0
24gb|BT020179.1| Arabidopsis thaliana At5g60730 mRNA, complete cds 40 9.0
25gb|BT015736.1| Arabidopsis thaliana At5g60730 mRNA, complete cds 40 9.0
26gb|AC109239.8| Mus musculus chromosome 3, clone RP23-191N23, com... 40 9.0
27gb|AC149297.1| Populus trichocarpa clone Pop1-015H07, complete s... 40 9.0
28emb|AL953901.15| Zebrafish DNA sequence from clone CH211-207G22 ... 40 9.0
29emb|CR450718.10| Zebrafish DNA sequence from clone CH211-246I5 i... 40 9.0
30gb|AC125348.3| Mus musculus BAC clone RP23-377H20 from chromosom... 40 9.0
31emb|AL691514.5| Human DNA sequence from clone RP11-105M16 on chr... 40 9.0
32emb|AL445193.6| Human DNA sequence from clone RP11-393I23 on chr... 40 9.0
33emb|AL357336.11| Human DNA sequence from clone RP11-373N18 on ch... 40 9.0
34emb|AL031073.1|HS142F18 Human DNA sequence from clone RP1-142F18... 40 9.0
35emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 40 9.0
36gb|BC063308.1| Homo sapiens development and differentiation enha... 40 9.0
37emb|AL672234.27| Mouse DNA sequence from clone RP23-356I16 on ch... 40 9.0
38gb|AC159255.3| Mus musculus BAC clone RP24-89C11 from chromosome... 40 9.0
39ref|NM_003887.1| Homo sapiens development and differentiation en... 40 9.0
40gb|AF372979.1| Mus musculus P locus fat-associated ATPase (Atp10... 40 9.0
41gb|AC156551.5| Mus musculus chromosome 8, clone RP23-348E18, com... 40 9.0
42dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
43emb|BX829849.1|CNS0A02V Arabidopsis thaliana Full-length cDNA Co... 40 9.0
44gb|AC080162.7| Homo sapiens BAC clone RP11-400L8 from 2, complet... 40 9.0
45gb|AC084604.1|CBRG43O03 Caenorhabditis briggsae cosmid G43O03, c... 40 9.0
46dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
47dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
48dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
49emb|BX005087.5| Zebrafish DNA sequence from clone CH211-91A7 in ... 40 9.0
50dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
51dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
52dbj|BS000013.1| Pan troglodytes chromosome 22 clone:RP43-009O02,... 40 9.0
53emb|BX004989.8| Zebrafish DNA sequence from clone CH211-167M4 in... 40 9.0
54dbj|AB005246.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 9.0
55dbj|AB007860.1| Homo sapiens KIAA0400 mRNA, partial cds 40 9.0
56gb|AC020647.9|AC020647 Homo sapiens 12 BAC RP11-922O23 (Roswell ... 40 9.0
57gb|AC113980.29| Mus musculus chromosome 5, clone RP24-63G23, com... 40 9.0
58emb|AL928989.9| Mouse DNA sequence from clone RP24-125C11 on chr... 40 9.0
59gb|AC162461.6| Mus musculus chromosome 5, clone RP23-265I19, com... 40 9.0 
>gb|AY110545.1| Zea mays CL31325_1 mRNA sequence
          Length = 950

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 120/145 (82%)
 Strand = Plus / Plus

                                                                       
Query: 364 cgtgcttcttccttgcgttttgtagaacagaatctgcaatcagatgtagagggcggcaac 423
           |||||||||||| | ||||||| || |||||||||||| || || | ||| || ||||||
Sbjct: 419 cgtgcttcttccctccgttttgcagcacagaatctgcagtccgacgcagacggtggcaac 478

                                                                       
Query: 424 acttgatttacgataagccttgttgctggcgcaccatccttctttaaagatgcatgaaac 483
           || ||||||| ||  |||||| |||   | ||||||||||||||||| ||  | ||||||
Sbjct: 479 acctgatttatgacgagccttcttgtgtgtgcaccatccttctttaatgactcgtgaaac 538

                                    
Query: 484 cttgatgactcagtaatcgccatca 508
           ||||||||||||||||  |||||||
Sbjct: 539 cttgatgactcagtaactgccatca 563
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>ref|XM_467761.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1221

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 502 gccatcaccgtaggaatcgtcacaatgataaattcagttgatt 544
           |||||||| || ||||| |||||||| ||||||||||||||||
Sbjct: 956 gccatcactgttggaatagtcacaattataaattcagttgatt 914
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>dbj|AK099676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070D05, full
           insert sequence
          Length = 1220

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 502 gccatcaccgtaggaatcgtcacaatgataaattcagttgatt 544
           |||||||| || ||||| |||||||| ||||||||||||||||
Sbjct: 531 gccatcactgttggaatagtcacaattataaattcagttgatt 489
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>gb|AC144928.17| Medicago truncatula clone mth2-8a18, complete sequence
          Length = 138948

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 292   acatcaacaagtggtgcttggat 314
             |||||||||||||||||||||||
Sbjct: 68423 acatcaacaagtggtgcttggat 68401
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 169      gaaatactccctctgtcacaaaagataagta 199
                ||||||||||||||||| ||||| |||||||
Sbjct: 29863406 gaaatactccctctgtcccaaaatataagta 29863376



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 165    taatgaaatactccctctgt 184
              ||||||||||||||||||||
Sbjct: 359254 taatgaaatactccctctgt 359235
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 514      ggaatcgtcacaatgataaattcagttgatt 544
                ||||| |||||||| ||||||||||||||||
Sbjct: 31272030 ggaatagtcacaattataaattcagttgatt 31272060



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 171     aatactccctctgtcacaaaagataagta 199
               ||||||||||||||| ||||| |||||||
Sbjct: 6036965 aatactccctctgtcccaaaatataagta 6036937



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 171     aatactccctctgtcacaaaagataagt 198
               ||||||||||||||| ||||| ||||||
Sbjct: 1100035 aatactccctctgtctcaaaatataagt 1100008
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>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1734_E02
          Length = 168566

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 514    ggaatcgtcacaatgataaattcagttgatt 544
              ||||| |||||||| ||||||||||||||||
Sbjct: 151873 ggaatagtcacaattataaattcagttgatt 151903
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>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1118_G04
          Length = 134464

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 514   ggaatcgtcacaatgataaattcagttgatt 544
             ||||| |||||||| ||||||||||||||||
Sbjct: 41898 ggaatagtcacaattataaattcagttgatt 41928
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>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0481E08
          Length = 171965

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 169   gaaatactccctctgtcacaaaagataagta 199
             ||||||||||||||||| ||||| |||||||
Sbjct: 58919 gaaatactccctctgtcccaaaatataagta 58889
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>gb|AC100956.9| Mus musculus chromosome 7, clone RP23-74B10, complete sequence
          Length = 245367

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 162   ttataatgaaatactccctctgtcaca 188
             |||||||||||| ||||||||||||||
Sbjct: 29466 ttataatgaaatgctccctctgtcaca 29440
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>gb|AC133709.11| Medicago truncatula clone mth2-7b3, complete sequence
          Length = 138950

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 292   acatcaacaagtggtgcttggat 314
             |||||||||||||||||||||||
Sbjct: 70526 acatcaacaagtggtgcttggat 70548
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>emb|BX548059.13| Zebrafish DNA sequence from clone DKEYP-80D11 in linkage group 12,
             complete sequence
          Length = 205581

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 263   atctgagggcaggggcgcctc 283
             |||||||||||||||||||||
Sbjct: 98561 atctgagggcaggggcgcctc 98541
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 171      aatactccctctgtcacaaaagataagta 199
                ||||||||||||||| ||||| |||||||
Sbjct: 17590589 aatactccctctgtcccaaaatataagta 17590561
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 173      tactccctctgtcacaaaagataag 197
                ||||||||||||||||||| |||||
Sbjct: 22911005 tactccctctgtcacaaaatataag 22910981
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>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1019_E02
          Length = 121607

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 173    tactccctctgtcacaaaagataag 197
              ||||||||||||||||||| |||||
Sbjct: 104272 tactccctctgtcacaaaatataag 104248
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>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1006_A02
          Length = 175153

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 171  aatactccctctgtcacaaaagataagta 199
            ||||||||||||||| ||||| |||||||
Sbjct: 2447 aatactccctctgtcccaaaatataagta 2419
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>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_F05
          Length = 147472

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 171   aatactccctctgtcacaaaagataagta 199
             ||||||||||||||| ||||| |||||||
Sbjct: 57804 aatactccctctgtcccaaaatataagta 57776
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>dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1005_D12
          Length = 150588

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 171   aatactccctctgtcacaaaagataagta 199
             ||||||||||||||| ||||| |||||||
Sbjct: 39311 aatactccctctgtcccaaaatataagta 39283
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>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00
          Length = 1457619

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 539     ttgattgtggatcttgcataa 559
               |||||||||||||||||||||
Sbjct: 1441183 ttgattgtggatcttgcataa 1441203
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>gb|AC168060.4| Mus musculus BAC clone RP23-305A9 from chromosome 8, complete sequence
          Length = 177422

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   gctatttccagaccacgtca 255
             ||||||||||||||||||||
Sbjct: 94002 gctatttccagaccacgtca 93983
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>ref|NM_125466.3| Arabidopsis thaliana ATP binding AT5G60730 mRNA, complete cds
          Length = 1419

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 467  ttaaagatgcatgaaaccttgatgactc 494
            ||||||||||||| |||||||| |||||
Sbjct: 1049 ttaaagatgcatgtaaccttgaagactc 1022
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>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone
             OSJNBb0052C07, complete sequence
          Length = 154528

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 170   aaatactccctctgtcacaaaagataag 197
             |||||||||||||||| ||||| |||||
Sbjct: 15645 aaatactccctctgtcccaaaatataag 15672
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>ref|XM_515290.1| PREDICTED: Pan troglodytes similar to development- and
            differentiation-enhancing factor 2; PYK2 C
            terminus-associated protein (LOC459014), mRNA
          Length = 2094

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 362  cgcgtgcttcttccttgcgt 381
            ||||||||||||||||||||
Sbjct: 1710 cgcgtgcttcttccttgcgt 1691
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>gb|BT020179.1| Arabidopsis thaliana At5g60730 mRNA, complete cds
          Length = 1176

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 467 ttaaagatgcatgaaaccttgatgactc 494
           ||||||||||||| |||||||| |||||
Sbjct: 946 ttaaagatgcatgtaaccttgaagactc 919
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>gb|BT015736.1| Arabidopsis thaliana At5g60730 mRNA, complete cds
          Length = 1358

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 467  ttaaagatgcatgaaaccttgatgactc 494
            ||||||||||||| |||||||| |||||
Sbjct: 1028 ttaaagatgcatgtaaccttgaagactc 1001
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>gb|AC109239.8| Mus musculus chromosome 3, clone RP23-191N23, complete sequence
          Length = 187162

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 253    tcactgaagaatctgagggc 272
              ||||||||||||||||||||
Sbjct: 143100 tcactgaagaatctgagggc 143119
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>gb|AC149297.1| Populus trichocarpa clone Pop1-015H07, complete sequence
          Length = 131790

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 380   gttttgtagaacagaatctg 399
             ||||||||||||||||||||
Sbjct: 70960 gttttgtagaacagaatctg 70941
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>emb|AL953901.15| Zebrafish DNA sequence from clone CH211-207G22 in linkage group 3,
              complete sequence
          Length = 196773

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    tagaacagaatctgcaatca 405
              ||||||||||||||||||||
Sbjct: 112687 tagaacagaatctgcaatca 112668
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>emb|CR450718.10| Zebrafish DNA sequence from clone CH211-246I5 in linkage group 3,
              complete sequence
          Length = 151291

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    tagaacagaatctgcaatca 405
              ||||||||||||||||||||
Sbjct: 147778 tagaacagaatctgcaatca 147759
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>gb|AC125348.3| Mus musculus BAC clone RP23-377H20 from chromosome 7, complete sequence
          Length = 188610

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 382   tttgtagaacagaatctgca 401
             ||||||||||||||||||||
Sbjct: 76607 tttgtagaacagaatctgca 76626
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>emb|AL691514.5| Human DNA sequence from clone RP11-105M16 on chromosome 10, complete
             sequence
          Length = 154348

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 295   tcaacaagtggtgcttggat 314
             ||||||||||||||||||||
Sbjct: 89177 tcaacaagtggtgcttggat 89158
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>emb|AL445193.6| Human DNA sequence from clone RP11-393I23 on chromosome 1 Contains a
             novel gene, a pseudogene similar to part of WAP
             four-disulfide core domain 3 (WFDC3), a ribosomal protein
             S26 (RPS26) pseudogene and a heterogeneous nuclear
             ribonucleoprotein A1 (HNRPA1) pseudogene, complete
             sequence
          Length = 68702

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   taacctccacatcaacaagt 303
             ||||||||||||||||||||
Sbjct: 47372 taacctccacatcaacaagt 47391
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>emb|AL357336.11| Human DNA sequence from clone RP11-373N18 on chromosome 10 Contains a
             novel gene, the 3' end of a novel gene and a CpZG island,
             complete sequence
          Length = 54727

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 466   tttaaagatgcatgaaaccttgat 489
             |||||| |||||||||||||||||
Sbjct: 29130 tttaaaaatgcatgaaaccttgat 29153
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>emb|AL031073.1|HS142F18 Human DNA sequence from clone RP1-142F18 on chromosome Xq26.3-27.2
              Contains the MAGEE1 gene for melanoma antigen, family E 1,
              a  melanoma antigen, family E 1(MAGEE1) pseudogene, and a
              CpG island, complete sequence
          Length = 141672

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 529    ataaattcagttgattgtggatct 552
              ||||||||||||||||||| ||||
Sbjct: 140300 ataaattcagttgattgtgtatct 140323
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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 389     aacagaatctgcaatcagat 408
               ||||||||||||||||||||
Sbjct: 1265915 aacagaatctgcaatcagat 1265896
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>gb|BC063308.1| Homo sapiens development and differentiation enhancing factor 2, mRNA
            (cDNA clone MGC:71731 IMAGE:30345039), complete cds
          Length = 5544

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 362  cgcgtgcttcttccttgcgt 381
            ||||||||||||||||||||
Sbjct: 1916 cgcgtgcttcttccttgcgt 1897
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>emb|AL672234.27| Mouse DNA sequence from clone RP23-356I16 on chromosome 8, complete
              sequence
          Length = 221012

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    gctatttccagaccacgtca 255
              ||||||||||||||||||||
Sbjct: 215151 gctatttccagaccacgtca 215170
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>gb|AC159255.3| Mus musculus BAC clone RP24-89C11 from chromosome 3, complete sequence
          Length = 216011

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    tcactgaagaatctgagggc 272
              ||||||||||||||||||||
Sbjct: 207889 tcactgaagaatctgagggc 207870
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>ref|NM_003887.1| Homo sapiens development and differentiation enhancing factor 2
            (DDEF2), mRNA
          Length = 5711

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 362  cgcgtgcttcttccttgcgt 381
            ||||||||||||||||||||
Sbjct: 1963 cgcgtgcttcttccttgcgt 1944
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>gb|AF372979.1| Mus musculus P locus fat-associated ATPase (Atp10a) gene, exons 2 through
              21 and partial cds
          Length = 129459

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    tttgtagaacagaatctgca 401
              ||||||||||||||||||||
Sbjct: 113454 tttgtagaacagaatctgca 113435
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>gb|AC156551.5| Mus musculus chromosome 8, clone RP23-348E18, complete sequence
          Length = 207944

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   ccaccagtactctcgagtta 164
             ||||||||||||||||||||
Sbjct: 73849 ccaccagtactctcgagtta 73868
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 172      atactccctctgtcacaaaagataagta 199
                ||||||| |||||||||||| |||||||
Sbjct: 34437154 atactccatctgtcacaaaatataagta 34437181
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>emb|BX829849.1|CNS0A02V Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB40ZF06 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1400

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 467  ttaaagatgcatgaaaccttgatgactc 494
            ||||||||||||| |||||||| |||||
Sbjct: 1048 ttaaagatgcatgtaaccttgaagactc 1021
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>gb|AC080162.7| Homo sapiens BAC clone RP11-400L8 from 2, complete sequence
          Length = 171653

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   cgcgtgcttcttccttgcgt 381
             ||||||||||||||||||||
Sbjct: 21882 cgcgtgcttcttccttgcgt 21863
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>gb|AC084604.1|CBRG43O03 Caenorhabditis briggsae cosmid G43O03, complete sequence
          Length = 39067

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 365  gtgcttcttccttgcgtttt 384
            ||||||||||||||||||||
Sbjct: 6298 gtgcttcttccttgcgtttt 6317
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>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0468B07
          Length = 169071

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 172    atactccctctgtcacaaaagataagta 199
              ||||||| |||||||||||| |||||||
Sbjct: 119498 atactccatctgtcacaaaatataagta 119525
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>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1020_C02
          Length = 124578

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 171   aatactccctctgtcacaaaagataagt 198
             ||||||||||||||| ||||| ||||||
Sbjct: 52559 aatactccctctgtctcaaaatataagt 52532
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>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0088N06
          Length = 123454

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 171   aatactccctctgtcacaaaagataagt 198
             ||||||||||||||| ||||| ||||||
Sbjct: 88743 aatactccctctgtctcaaaatataagt 88716
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>emb|BX005087.5| Zebrafish DNA sequence from clone CH211-91A7 in linkage group 10,
             complete sequence
          Length = 88649

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 526   atgataaattcagttgattg 545
             ||||||||||||||||||||
Sbjct: 74810 atgataaattcagttgattg 74791
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>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0425G02
          Length = 155432

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 172   atactccctctgtcacaaaagataagta 199
             ||||||| |||||||||||| |||||||
Sbjct: 12873 atactccatctgtcacaaaatataagta 12900
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>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0644B06
          Length = 194509

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   taatgaaatactccctctgt 184
             ||||||||||||||||||||
Sbjct: 69207 taatgaaatactccctctgt 69188
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>dbj|BS000013.1| Pan troglodytes chromosome 22 clone:RP43-009O02, map 22, complete
              sequences
          Length = 180661

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 531    aaattcagttgattgtggatcttg 554
              |||| |||||||||||||||||||
Sbjct: 140677 aaatgcagttgattgtggatcttg 140654
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>emb|BX004989.8| Zebrafish DNA sequence from clone CH211-167M4 in linkage group 6,
              complete sequence
          Length = 172968

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 526    atgataaattcagttgattg 545
              ||||||||||||||||||||
Sbjct: 137052 atgataaattcagttgattg 137071
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>dbj|AB005246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUP24
          Length = 77999

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 467   ttaaagatgcatgaaaccttgatgactc 494
             ||||||||||||| |||||||| |||||
Sbjct: 68197 ttaaagatgcatgtaaccttgaagactc 68170
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>dbj|AB007860.1| Homo sapiens KIAA0400 mRNA, partial cds
          Length = 5711

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 362  cgcgtgcttcttccttgcgt 381
            ||||||||||||||||||||
Sbjct: 1963 cgcgtgcttcttccttgcgt 1944
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>gb|AC020647.9|AC020647 Homo sapiens 12 BAC RP11-922O23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 147720

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 535    tcagttgattgtggatcttg 554
              ||||||||||||||||||||
Sbjct: 138803 tcagttgattgtggatcttg 138784
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>gb|AC113980.29| Mus musculus chromosome 5, clone RP24-63G23, complete sequence
          Length = 193657

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   aaagataagtactaacaaaa 208
             ||||||||||||||||||||
Sbjct: 46849 aaagataagtactaacaaaa 46830
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>emb|AL928989.9| Mouse DNA sequence from clone RP24-125C11 on chromosome 11, complete
             sequence
          Length = 121556

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    cagatctacagcctgaacag 79
             ||||||||||||||||||||
Sbjct: 41156 cagatctacagcctgaacag 41137
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>gb|AC162461.6| Mus musculus chromosome 5, clone RP23-265I19, complete sequence
          Length = 233632

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    tagaacagaatctgcaatca 405
              ||||||||||||||||||||
Sbjct: 111137 tagaacagaatctgcaatca 111118


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,228,934
Number of Sequences: 3902068
Number of extensions: 5228934
Number of successful extensions: 94305
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93791
Number of HSP's gapped (non-prelim): 513
length of query: 660
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 637
effective length of database: 17,143,297,704
effective search space: 10920280637448
effective search space used: 10920280637448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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