>TO401_ARATH (Q9LHE5) Mitochondrial import receptor subunit TOM40 homolog 1|
           (Translocase of outer membrane 40 kDa subunit homolog 1)
          Length = 308

 Score =  184 bits (466), Expect = 3e-46
 Identities = 88/116 (75%), Positives = 105/116 (90%)
 Frame = -2

Query: 682 RKSGIGFNSRYNTDKMVGTLQVASTGIVALSYVQKVSEKVSLATDFMYNHMSRDVTSSVG 503
           RKSGIG+ +RY TDKMV + QVASTG V ++YVQK+S+KVSLATDFMYN+ SRDVT+SVG
Sbjct: 193 RKSGIGYAARYETDKMVASGQVASTGAVVMNYVQKISDKVSLATDFMYNYFSRDVTASVG 252

Query: 502 YDYILRQCRLRGKIDSNGVVAAYLEERLNMGVNFLLSAEIDHPKKNYKFGFGMTVG 335
           YDY+LRQ R+RGKIDSNGV +A LEERL+MG+NFLLSAE+DH KK+YKFGFG+TVG
Sbjct: 253 YDYMLRQARVRGKIDSNGVASALLEERLSMGLNFLLSAELDHKKKDYKFGFGLTVG 308

>TO402_ARATH (Q9SX55) Putative mitochondrial import receptor subunit TOM40|
           homolog 2 (Translocase of outer membrane 40 kDa subunit
           homolog 2)
          Length = 310

 Score =  165 bits (418), Expect = 1e-40
 Identities = 78/115 (67%), Positives = 98/115 (85%)
 Frame = -2

Query: 688 QQRKSGIGFNSRYNTDKMVGTLQVASTGIVALSYVQKVSEKVSLATDFMYNHMSRDVTSS 509
           QQ  SG+G+ +RY TDK V + Q+ASTG+  ++YV KVSEK+S ATDF+YN++SRDVT+S
Sbjct: 193 QQLMSGVGYAARYETDKTVASGQIASTGVAVMNYVHKVSEKLSFATDFIYNYLSRDVTAS 252

Query: 508 VGYDYILRQCRLRGKIDSNGVVAAYLEERLNMGVNFLLSAEIDHPKKNYKFGFGM 344
           VGYD I RQ RLRGK+DSNGVVAAYLEE+L +G+ FLLSAE+DH KK+YKFGFG+
Sbjct: 253 VGYDLITRQSRLRGKVDSNGVVAAYLEEQLPIGLRFLLSAEVDHVKKDYKFGFGV 307

>TOM40_SCHPO (O13656) Probable mitochondrial import receptor subunit tom40|
           (Translocase of outer membrane 40 kDa subunit)
          Length = 344

 Score = 63.2 bits (152), Expect = 7e-10
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
 Frame = -2

Query: 670 IGFNSRYNTDKMVGTLQV-ASTGIVALSYVQKVSEKVSLATDFMY-----NHMSRDVT-- 515
           + + +RYN    + T  +  S G V  ++ +K+S KV    +        NH +  +T  
Sbjct: 200 LSYMTRYNAADWIATAHLNGSQGDVTATFWRKLSPKVEAGVECQLSPVGLNHSAALMTGP 259

Query: 514 -----SSVGYDYILRQCRLRGKIDSNGVVAAYLEERLNMGVNFLLSAEIDHPKKNYKFGF 350
                +SVG  Y   Q   RG++DS G V  YLE RL   +    S+E+DHP +N K G 
Sbjct: 260 KPEGLTSVGVKYEFAQSIYRGQVDSKGRVGVYLERRLAPAITLAFSSELDHPNRNAKVGL 319

Query: 349 GMTV 338
           G+++
Sbjct: 320 GLSL 323

>TM40L_MOUSE (Q9CZR3) Protein TOMM40-like|
          Length = 308

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
 Frame = -2

Query: 655 RYNTDKMVGTLQVASTGIVALSYVQKVSEKVSLATDFMYNHMSRDVTSSVGYDYILRQCR 476
           +Y+    V TL V S G  A SY  K +E+V +  +F  N   +D T S GY   L Q  
Sbjct: 200 KYSAVHWVATLNVGSGGAHA-SYYHKANEQVQVGVEFEANTRLQDTTFSFGYHLTLPQAD 258

Query: 475 L--RGKIDSNGVVAAYLEERLN-MGVNFLLSAEIDHPKKNYKFGFGMTVG 335
           +  RG +DSN  V A LE+++  + V   L A ++H +  +  GF +TVG
Sbjct: 259 MVFRGLVDSNWCVGAVLEKKMRPLPVTLALGAFLNHWRNRFHCGFSITVG 308

>TM40L_HUMAN (Q969M1) Protein TOMM40-like|
          Length = 308

 Score = 59.7 bits (143), Expect = 8e-09
 Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
 Frame = -2

Query: 655 RYNTDKMVGTLQVASTGIVALSYVQKVSEKVSLATDFMYNHMSRDVTSSVGYDYILRQCR 476
           +Y+    V TL V S G  A SY  + +E+V +  +F  N   +D T S GY   L Q  
Sbjct: 200 KYSAVHWVATLNVGSGGAHA-SYYHRANEQVQVGVEFEANTRLQDTTFSFGYHLTLPQAN 258

Query: 475 L--RGKIDSNGVVAAYLEERLN-MGVNFLLSAEIDHPKKNYKFGFGMTVG 335
           +  RG +DSN  V A LE+++  + V   L A ++H +  +  GF +TVG
Sbjct: 259 MVFRGLVDSNWCVGAVLEKKMPPLPVTLALGAFLNHWRNRFHCGFSITVG 308

>TOM40_XENLA (Q7ZTM6) Probable mitochondrial import receptor subunit TOM40|
           homolog (Translocase of outer membrane 40 kDa subunit
           homolog)
          Length = 336

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
 Frame = -2

Query: 655 RYNTDKMVGTLQVASTGIVALSYVQKVSEKVSLATDFMYNHMSRDVTSSVGYDYILRQCR 476
           RY       TL +   G  A +Y  K ++++ L  +F  +   +D + S+GY   L +  
Sbjct: 228 RYTAPSWTATLTLGQAGAHA-TYYHKANDQLQLGVEFEASARMQDTSVSLGYQLDLPKAN 286

Query: 475 L--RGKIDSNGVVAAYLEERLN-MGVNFLLSAEIDHPKKNYKFGFGMTVG 335
           L  +G IDSN +V A LE++L  + +   + A ++H K  ++ GFG+T+G
Sbjct: 287 LLFKGSIDSNWIVGATLEKKLPPLPLTLAMGAFLNHKKNKFQCGFGLTIG 336

>TOM40_HUMAN (O96008) Probable mitochondrial import receptor subunit TOM40|
           homolog (Translocase of outer membrane 40 kDa subunit
           homolog) (Haymaker protein) (p38.5)
          Length = 361

 Score = 57.0 bits (136), Expect = 5e-08
 Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
 Frame = -2

Query: 655 RYNTDKMVGTLQVASTGIVALSYVQKVSEKVSLATDFMYNHMSRDVTSSVGYDYILRQCR 476
           +Y  +  + T+ +   G+ A +Y  K S+++ +  +F  +   +D + S GY   L +  
Sbjct: 253 KYTLNNWLATVTLGQAGMHA-TYYHKASDQLQVGVEFEASTRMQDTSVSFGYQLDLPKAN 311

Query: 475 L--RGKIDSNGVVAAYLEERLN-MGVNFLLSAEIDHPKKNYKFGFGMTVG 335
           L  +G +DSN +V A LE++L  + +   L A ++H K  ++ GFG+T+G
Sbjct: 312 LLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGLTIG 361

>TOM40_XENTR (Q6P825) Probable mitochondrial import receptor subunit TOM40|
           homolog (Translocase of outer membrane 40 kDa subunit
           homolog)
          Length = 336

 Score = 56.2 bits (134), Expect = 9e-08
 Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
 Frame = -2

Query: 655 RYNTDKMVGTLQVASTGIVALSYVQKVSEKVSLATDFMYNHMSRDVTSSVGYDYILRQCR 476
           RY       TL +   G  A +Y  K ++++ +  +F  +   +D + S GY   L +  
Sbjct: 228 RYTAPNWTATLTLGQAGAHA-TYYHKANDQLQVGVEFEASTRMQDTSVSFGYQLDLPKAN 286

Query: 475 L--RGKIDSNGVVAAYLEERLN-MGVNFLLSAEIDHPKKNYKFGFGMTVG 335
           L  +G +DSN +V A LE++L  + +   + A ++H K  ++ GFG+T+G
Sbjct: 287 LLFKGSVDSNWIVGATLEKKLPPLPLTLAMGAFLNHKKNKFQCGFGLTIG 336

>TOM40_MOUSE (Q9QYA2) Probable mitochondrial import receptor subunit TOM40|
           homolog (Translocase of outer membrane 40 kDa subunit
           homolog)
          Length = 359

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 30/110 (27%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
 Frame = -2

Query: 655 RYNTDKMVGTLQVASTGIVALSYVQKVSEKVSLATDFMYNHMSRDVTSSVGYDYILRQCR 476
           +Y  +  + T+ +   G+ A +Y  K S+++ +  +F  +   +D ++S GY   L +  
Sbjct: 251 KYTLNNWLATVTLGQAGMHA-TYYHKASDQLQVGVEFEASTRMQDTSASFGYQLDLPKAN 309

Query: 475 L--RGKIDSNGVVAAYLEERLN-MGVNFLLSAEIDHPKKNYKFGFGMTVG 335
              +G ++SN +V A LE++L  + +   L A ++H K  +  GFG+T+G
Sbjct: 310 FLFKGSVNSNWIVGATLEKKLPPLPLTLSLCAFLNHRKNKFLCGFGLTIG 359

>TOM40_RAT (Q75Q40) Probable mitochondrial import receptor subunit TOM40|
           homolog (Translocase of outer membrane 40 kDa subunit
           homolog) (38 kDa mitochondrial outer membrane protein)
           (OM38)
          Length = 361

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 30/110 (27%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
 Frame = -2

Query: 655 RYNTDKMVGTLQVASTGIVALSYVQKVSEKVSLATDFMYNHMSRDVTSSVGYDYILRQCR 476
           +Y  +  + T+ +   G+ A +Y  K S+++ +  +F  +   +D ++S GY   L +  
Sbjct: 253 KYTLNNWLATVTLGQAGMHA-TYYHKASDQLQVGVEFEASTRMQDTSASFGYQLDLPKAN 311

Query: 475 L--RGKIDSNGVVAAYLEERLN-MGVNFLLSAEIDHPKKNYKFGFGMTVG 335
              +G ++SN +V A LE++L  + +   L A ++H K  +  GFG+T+G
Sbjct: 312 FLFKGSVNSNWIVGATLEKKLPPLPLTLSLCAFLNHRKNKFLCGFGLTIG 361

>TOM40_YEAST (P23644) Mitochondrial import receptor subunit TOM40 (Mitochondrial|
           import-site-protein ISP42) (Translocase of outer
           membrane 40 kDa subunit)
          Length = 387

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
 Frame = -2

Query: 676 SGIGFNSRYNTDKM--VGTLQVASTGIVALSYVQKVSEKVSLATDFMYNHMSRDVT---- 515
           +G+ + +RY + K   + + Q+ + G +  S  +KV++ V    +         +T    
Sbjct: 228 AGVSYLTRYVSKKQDWIFSGQLQANGALIASLWRKVAQNVEAGIETTLQAGMVPITDPLM 287

Query: 514 -------------SSVGYDYILRQCRLRGKIDSNGVVAAYLEERLNMGVNFLLSAEIDHP 374
                        +++G  Y  RQ   RG +DSNG VA +LE ++   ++ L   EIDH 
Sbjct: 288 GTPIGIQPTVEGSTTIGAKYEYRQSVYRGTLDSNGKVACFLERKVLPTLSVLFCGEIDHF 347

Query: 373 KKNYKFGFGM 344
           K + K G G+
Sbjct: 348 KNDTKIGCGL 357

>RS7_THICU (O50564) 30S ribosomal protein S7|
          Length = 156

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
 Frame = +3

Query: 39  QKPIAGNLRVKK---------SPTAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQV 191
           ++P  GNL V K           +  E+I+   F+ +Q K     + + S+A    +P V
Sbjct: 14  REPKFGNLDVAKFMNVVMLSGKKSIAESIVYGAFEAIQNKTGKDPIEIFSQALSNVKPMV 73

Query: 192 HRKSLSA*GANLQVP 236
             KS    GAN QVP
Sbjct: 74  EVKSRRVGGANYQVP 88

>PROB_HELHP (Q7VJ31) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 264

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 350 KTKLVVLLWMVNLCR*KKVD-THVQSLLQVCSNDTI*VNFAP*TALSKDIIITNTGSHIS 526
           K ++V+ +   NLC  K +D T +++L Q+ S             +  D+I+ ++G+  S
Sbjct: 3   KPRIVLKIGSSNLCNGKIIDKTQIKALAQIISE----------LKMRFDVILVSSGAVAS 52

Query: 527 GHVVIH 544
           GH  +H
Sbjct: 53  GHTTLH 58

>RS7_UREPA (Q9PPW6) 30S ribosomal protein S7|
          Length = 155

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 90  ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 236
           ++II + F++V+QK     + + +KA +   P +  K     G+N QVP
Sbjct: 39  QSIIYSAFEIVEQKTGKPALEVFNKAIDNVMPIIELKVRRVGGSNFQVP 87

>RS7_MYCGA (Q7NAV2) 30S ribosomal protein S7|
          Length = 155

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 90  ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 236
           + I+  +F L+ QK     + + +KA E   P++  K     GAN QVP
Sbjct: 39  QKILYGSFDLIAQKTQKDPLEIFNKAVENIMPRLELKVRRIAGANYQVP 87

>RS7_TREDE (Q73NV4) 30S ribosomal protein S7|
          Length = 156

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +3

Query: 69  KKSPTAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 236
           KKS T K  I+  +F  +++K  +  + + SKA +  +P V  KS    GA  QVP
Sbjct: 35  KKSITTK--IMYDSFDKIKEKTGEEPLAVFSKALDNVKPVVEVKSRRVGGATYQVP 88

>RS7_MYCHJ (Q4AAQ5) 30S ribosomal protein S7|
          Length = 156

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 81  TAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 236
           T  +NI+ + F+LV++K+    + +  +A +   P    +S    G N QVP
Sbjct: 37  TTAQNILYSAFKLVEEKLQKDALEVFRQAVKNVTPLTEVRSRRIGGTNYQVP 88

>RS7_MYCH7 (Q4A8T6) 30S ribosomal protein S7|
          Length = 156

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 81  TAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 236
           T  +NI+ + F+LV++K+    + +  +A +   P    +S    G N QVP
Sbjct: 37  TTAQNILYSAFKLVEEKLQKDALEVFRQAVKNVTPLTEVRSRRIGGTNYQVP 88

>RS7_MYCH2 (Q601W7) 30S ribosomal protein S7|
          Length = 156

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 81  TAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 236
           T  +NI+ + F+LV++K+    + +  +A +   P    +S    G N QVP
Sbjct: 37  TTAQNILYSAFKLVEEKLQKDALEVFRQAVKNVTPLTEVRSRRIGGTNYQVP 88

>RS7_MYCS5 (Q4A702) 30S ribosomal protein S7|
          Length = 156

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 90  ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 236
           ++I+ + F LV++K     M + ++A E   PQ+  ++    G N QVP
Sbjct: 40  QDILYSAFDLVKEKTKKDPMQVFTQAVENITPQLEIRTRRIGGTNYQVP 88

>PRS8_SCHPO (P41836) 26S protease regulatory subunit 8 homolog (Protein let1)|
          Length = 403

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 87  KENIITTTFQLVQ---QKIMDAQMPMLSKAAEMRQPQVHRKSLSA 212
           K N++ +   +VQ   QKI DA++ +L K   +R+ +  R  L+A
Sbjct: 6   KTNVLQSNENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNA 50

>RS7_MESFL (Q6F0J3) 30S ribosomal protein S7|
          Length = 155

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 90  ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 236
           + II   F ++++K  +  + + +KA E  +P +  K     GAN QVP
Sbjct: 39  QTIIYDAFDIIKEKTGEEPIEIFNKAIENIKPHLELKVRRIGGANYQVP 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,313,890
Number of Sequences: 219361
Number of extensions: 1893233
Number of successful extensions: 4807
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4807
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)