ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5k10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK105342.1| Oryza sativa (japonica cultivar-group) cDNA clon... 365 1e-97
2gb|AY109381.1| Zea mays CL3204_1 mRNA sequence 325 1e-85
3gb|BT018673.1| Zea mays clone EL01N0510E07.d mRNA sequence 309 7e-81
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 109 1e-20
5gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare str... 109 1e-20
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
7gb|AF051231.1|AF051231 Picea mariana ISP42-like protein (Sb41) m... 68 4e-08
8ref|NM_112890.3| Arabidopsis thaliana TOM40; voltage-gated ion-s... 44 0.60
9gb|AY117216.1| Arabidopsis thaliana putative membrane import pro... 44 0.60
10gb|AY050925.1| Arabidopsis thaliana putative membrane import pro... 44 0.60
11emb|BX824823.1|CNS0A5JY Arabidopsis thaliana Full-length cDNA Co... 44 0.60
12emb|BX824118.1|CNS0A5LF Arabidopsis thaliana Full-length cDNA Co... 44 0.60
13emb|BX822251.1|CNS0A5UN Arabidopsis thaliana Full-length cDNA Co... 44 0.60
14emb|BX824709.1|CNS0A5IA Arabidopsis thaliana Full-length cDNA Co... 44 0.60
15ref|NM_103923.1| Arabidopsis thaliana voltage-gated ion-selectiv... 42 2.4
16gb|AC144931.29| Medicago truncatula clone mth2-22b18, complete s... 42 2.4
17gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete se... 42 2.4
18gb|AC154857.2| Mus musculus BAC clone RP23-16K21 from chromosome... 42 2.4
19gb|AC102763.10| Mus musculus chromosome 8, clone RP24-500B21, co... 42 2.4
20emb|AL691437.7| Mouse DNA sequence from clone RP23-248J10 on chr... 42 2.4
21gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 40 9.4
22gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, nea... 40 9.4
23gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genom... 40 9.4
24gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chrom... 40 9.4
25emb|CR932665.1|CNS0KYDQ Paramecium tetraurelia, Small GTPase rab... 40 9.4
26ref|XM_727688.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 9.4
27ref|XM_739719.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 9.4
28emb|BX321882.7| Zebrafish DNA sequence from clone DKEYP-30F1 in ... 40 9.4
29gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hos... 40 9.4
30emb|BX294135.1| Pirellula sp. strain 1 complete genome; segment ... 40 9.4
31emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 40 9.4
32emb|AL161495.2|ATCHRIV7 Arabidopsis thaliana DNA chromosome 4, c... 40 9.4
33gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence 40 9.4
34gb|AC120781.23| Pan troglodytes clone rp43-28m17, complete sequence 40 9.4
35gb|AC118585.18| Pan troglodytes clone rp43-26n14, complete sequence 40 9.4
36emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of... 40 9.4
37emb|BX649633.13| Zebrafish DNA sequence from clone CH211-127A20 ... 40 9.4
38gb|AC073869.5| Homo sapiens BAC clone RP11-109E12 from 2, comple... 40 9.4
39dbj|AB021267.1| Arabidopsis thaliana copia-like retrotransposon ... 40 9.4
40dbj|AB021266.1| Arabidopsis thaliana copia-like retrotransposon ... 40 9.4
41dbj|AB021264.1| Arabidopsis thaliana copia-like retrotransposon ... 40 9.4
42emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-5... 40 9.4
43emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-2... 40 9.4
44emb|AL691444.9| Mouse DNA sequence from clone RP23-224E21 on chr... 40 9.4
45dbj|AP000533.1| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 40 9.4 
>dbj|AK105342.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-G11, full
            insert sequence
          Length = 1638

 Score =  365 bits (184), Expect = 1e-97
 Identities = 313/356 (87%)
 Strand = Plus / Minus

                                                                        
Query: 330  tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatctct 389
            ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1066 tactctcctacggtcattccaaaaccaaacttgtagttcttctttgaatggtcaatctct 1007

                                                                        
Query: 390  gcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaacgaca 449
            ||||| |||||||| || || |||||||||| |||||| ||||| ||||||||||| |||
Sbjct: 1006 gcagaaagaagaaaattaactcccatgttcaatctctcttccaaatatgcagcaacaaca 947

                                                                        
Query: 450  ccatttgagtcaattttgccccttagacggcactgtctaaggatataatcataaccaaca 509
            ||||||||||||| ||| |||||||| |||||||| ||||| ||||| ||||||||||  
Sbjct: 946  ccatttgagtcaaattttccccttagtcggcactgcctaagcatatagtcataaccaaag 887

                                                                        
Query: 510  ctggaagtcacatctctggacatgtggttatacataaagtcagtagcaagagacaccttt 569
            |||||||| || || || |||||||| |||||||| |||||||  ||||| || ||||| 
Sbjct: 886  ctggaagtaacgtcccttgacatgtgattatacatgaagtcagacgcaagggaaaccttc 827

                                                                        
Query: 570  tcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgtagagta 629
            || |||||||| |||||||| || || ||||| |||||||| || |||||||||||||||
Sbjct: 826  tcggaaactttctggacatagctcaaggcaactataccagtactggcaacctgtagagta 767

                                                                    
Query: 630  cccaccattttatctgtattgtagcgagaattaaatccaattcctgacttcctttg 685
            |||||||||||||||| ||| || ||||||  ||| ||||||||||||||||||||
Sbjct: 766  cccaccattttatctgaattatatcgagaagcaaaaccaattcctgacttcctttg 711
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>gb|AY109381.1| Zea mays CL3204_1 mRNA sequence
          Length = 1476

 Score =  325 bits (164), Expect = 1e-85
 Identities = 308/356 (86%)
 Strand = Plus / Plus

                                                                       
Query: 330 tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatctct 389
           ||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||| 
Sbjct: 412 tactctcctacggtcattccaaaaccaaacttgtagttcttcttacaatggtcaatctca 471

                                                                       
Query: 390 gcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaacgaca 449
           ||||||||||| |||||||||||||||||||  ||||| ||||||||||| ||||| |||
Sbjct: 472 gcagatagaaggaagttgacacccatgttcaacctctcttccaagtatgcggcaacaaca 531

                                                                       
Query: 450 ccatttgagtcaattttgccccttagacggcactgtctaaggatataatcataaccaaca 509
           ||||| ||||| |||||||| ||||| |||||||| ||||| |  |||||||||||||  
Sbjct: 532 ccattcgagtctattttgcctcttaggcggcactgcctaagcaagtaatcataaccaaag 591

                                                                       
Query: 510 ctggaagtcacatctctggacatgtggttatacataaagtcagtagcaagagacaccttt 569
           |||| ||| |||||||| ||||| ||||||||||| |||||||  ||||| || ||||| 
Sbjct: 592 ctggcagttacatctcttgacatatggttatacatgaagtcagacgcaagggaaaccttc 651

                                                                       
Query: 570 tcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgtagagta 629
           || ||||  || |||||||||||||| ||||| || |||||||| || ||||||||||| 
Sbjct: 652 tcggaaatcttctggacataacttaaggcaactattccagtgcttgcgacctgtagagtg 711

                                                                   
Query: 630 cccaccattttatctgtattgtagcgagaattaaatccaattcctgacttcctttg 685
           ||||||||||| ||||| |||||||||||   ||| |||||||| |||||||||||
Sbjct: 712 cccaccattttgtctgtgttgtagcgagaggcaaaaccaattccagacttcctttg 767
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>gb|BT018673.1| Zea mays clone EL01N0510E07.d mRNA sequence
          Length = 1429

 Score =  309 bits (156), Expect = 7e-81
 Identities = 306/356 (85%)
 Strand = Plus / Minus

                                                                        
Query: 330  tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatctct 389
            ||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||| 
Sbjct: 1047 tactctcctacggtcattccaaaaccaaacttgtagttcttcttacaatggtcaatctca 988

                                                                        
Query: 390  gcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaacgaca 449
            ||||||||||| |||||||||||||||||||  ||||| ||||||||||| |||||  ||
Sbjct: 987  gcagatagaaggaagttgacacccatgttcaacctctcttccaagtatgcggcaacacca 928

                                                                        
Query: 450  ccatttgagtcaattttgccccttagacggcactgtctaaggatataatcataaccaaca 509
            ||||| ||||| |||||||| ||||| |||||||| ||||| |  |||||||||||||  
Sbjct: 927  ccattcgagtctattttgcctcttaggcggcactgcctaagcaagtaatcataaccaaag 868

                                                                        
Query: 510  ctggaagtcacatctctggacatgtggttatacataaagtcagtagcaagagacaccttt 569
            |||| ||| |||||||| ||||| ||||||||||| |||||||  ||||| || ||||| 
Sbjct: 867  ctggcagttacatctcttgacatatggttatacatgaagtcagacgcaagggaaaccttc 808

                                                                        
Query: 570  tcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgtagagta 629
            || ||||  || |||||||||| ||| ||||| || |||||||| || ||||||||||| 
Sbjct: 807  tcggaaatcttctggacataacgtaaggcaactattccagtgcttgcgacctgtagagtg 748

                                                                    
Query: 630  cccaccattttatctgtattgtagcgagaattaaatccaattcctgacttcctttg 685
            ||||||||||| ||||| |||||||||||   ||| |||||||| |||||||||||
Sbjct: 747  cccaccattttgtctgtgttgtagcgagaggcaaaaccaattccagacttcctttg 692
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                            
Query: 386      ctctgcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaac 445
                ||||||||| |||||||| || || |||||||||| |||||| ||||| |||||||||||
Sbjct: 11719863 ctctgcagaaagaagaaaattaactcccatgttcaatctctcttccaaatatgcagcaac 11719804

                                                       
Query: 446      gacaccatttgagtcaattttgccccttagacggcactg 484
                 |||||||||||||||| ||| |||||||| ||||||||
Sbjct: 11719803 aacaccatttgagtcaaattttccccttagtcggcactg 11719765



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                          
Query: 330      tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatct 387
                ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11720508 tactctcctacggtcattccaaaaccaaacttgtagttcttctttgaatggtcaatct 11720451



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                            
Query: 564      accttttcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgt 623
                ||||| || |||||||| |||||||| || || ||||| |||||||| || |||||||||
Sbjct: 11719406 accttctcggaaactttctggacatagctcaaggcaactataccagtactggcaacctgt 11719347

                            
Query: 624      agagtacccacc 635
                ||||||||||||
Sbjct: 11719346 agagtacccacc 11719335



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 633      accattttatctgtattgtagcgagaattaaatccaattcctgacttcctttg 685
                ||||||||||||| ||| || ||||||  ||| ||||||||||||||||||||
Sbjct: 11718753 accattttatctgaattatatcgagaagcaaaaccaattcctgacttcctttg 11718701



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 534      tggttatacataaagtcagt 553
                ||||||||||||||||||||
Sbjct: 29200841 tggttatacataaagtcagt 29200822
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>gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0093J20, from chromosome 3, complete sequence
          Length = 148635

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                          
Query: 386    ctctgcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaac 445
              ||||||||| |||||||| || || |||||||||| |||||| ||||| |||||||||||
Sbjct: 108958 ctctgcagaaagaagaaaattaactcccatgttcaatctctcttccaaatatgcagcaac 108899

                                                     
Query: 446    gacaccatttgagtcaattttgccccttagacggcactg 484
               |||||||||||||||| ||| |||||||| ||||||||
Sbjct: 108898 aacaccatttgagtcaaattttccccttagtcggcactg 108860



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                        
Query: 330    tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatct 387
              ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 109603 tactctcctacggtcattccaaaaccaaacttgtagttcttctttgaatggtcaatct 109546



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                          
Query: 564    accttttcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgt 623
              ||||| || |||||||| |||||||| || || ||||| |||||||| || |||||||||
Sbjct: 108501 accttctcggaaactttctggacatagctcaaggcaactataccagtactggcaacctgt 108442

                          
Query: 624    agagtacccacc 635
              ||||||||||||
Sbjct: 108441 agagtacccacc 108430



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                   
Query: 633    accattttatctgtattgtagcgagaattaaatccaattcctgacttcctttg 685
              ||||||||||||| ||| || ||||||  ||| ||||||||||||||||||||
Sbjct: 107848 accattttatctgaattatatcgagaagcaaaaccaattcctgacttcctttg 107796
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                            
Query: 386      ctctgcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaac 445
                ||||||||| |||||||| || || |||||||||| |||||| ||||| |||||||||||
Sbjct: 11716626 ctctgcagaaagaagaaaattaactcccatgttcaatctctcttccaaatatgcagcaac 11716567

                                                       
Query: 446      gacaccatttgagtcaattttgccccttagacggcactg 484
                 |||||||||||||||| ||| |||||||| ||||||||
Sbjct: 11716566 aacaccatttgagtcaaattttccccttagtcggcactg 11716528



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                          
Query: 330      tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatct 387
                ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11717271 tactctcctacggtcattccaaaaccaaacttgtagttcttctttgaatggtcaatct 11717214



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                            
Query: 564      accttttcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgt 623
                ||||| || |||||||| |||||||| || || ||||| |||||||| || |||||||||
Sbjct: 11716169 accttctcggaaactttctggacatagctcaaggcaactataccagtactggcaacctgt 11716110

                            
Query: 624      agagtacccacc 635
                ||||||||||||
Sbjct: 11716109 agagtacccacc 11716098



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 633      accattttatctgtattgtagcgagaattaaatccaattcctgacttcctttg 685
                ||||||||||||| ||| || ||||||  ||| ||||||||||||||||||||
Sbjct: 11715516 accattttatctgaattatatcgagaagcaaaaccaattcctgacttcctttg 11715464



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 534      tggttatacataaagtcagt 553
                ||||||||||||||||||||
Sbjct: 29292263 tggttatacataaagtcagt 29292244
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>gb|AF051231.1|AF051231 Picea mariana ISP42-like protein (Sb41) mRNA, partial cds
          Length = 651

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 207/262 (79%), Gaps = 2/262 (0%)
 Strand = Plus / Minus

                                                                       
Query: 332 ctctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatctctgc 391
           |||||| |||||||| ||||||||||||||||| |  |||||   ||| |||||||||||
Sbjct: 280 ctctccaacagtcatcccaaaaccaaacttgtaatctttcttccaatgatcaatctctgc 221

                                                                       
Query: 392 agatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaacgaca-c 450
           ||| |||| ||| || || ||||| |||| ||| || ||||  || ||||| || ||| |
Sbjct: 220 agaaagaacaaaattcactcccatattcaatctttcttccagataagcagctac-acacc 162

                                                                       
Query: 451 catttgagtcaattttgccccttagacggcactgtctaaggatataatcataaccaacac 510
           ||||||  |||||  | ||||| || |||||||| | ||| |  ||||||||||||||||
Sbjct: 161 catttgtatcaatccttcccctcagccggcactgccgaagtaggtaatcataaccaacac 102

                                                                       
Query: 511 tggaagtcacatctctggacatgtggttatacataaagtcagtagcaagagacacctttt 570
           | |  ||   |||||| |||||||| || ||||| || ||||  || || ||||||||||
Sbjct: 101 tagctgttgaatctcttgacatgtgattgtacatgaaatcagatgccagtgacacctttt 42

                                 
Query: 571 cagaaactttttggacataact 592
           | || ||||| || ||||||||
Sbjct: 41  cggagactttctgcacataact 20
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>ref|NM_112890.3| Arabidopsis thaliana TOM40; voltage-gated ion-selective channel
            AT3G20000 (TOM40) mRNA, complete cds
          Length = 1343

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 351  aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 408
            |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 1006 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 949
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>gb|AY117216.1| Arabidopsis thaliana putative membrane import protein (At3g20000)
           mRNA, complete cds
          Length = 961

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 351 aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 408
           |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 911 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 854
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>gb|AY050925.1| Arabidopsis thaliana putative membrane import protein (At3g20000)
           mRNA, complete cds
          Length = 1329

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 351 aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 408
           |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 976 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 919
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>emb|BX824823.1|CNS0A5JY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH75ZE08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1290

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 351  aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 408
            |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 1001 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 944
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>emb|BX824118.1|CNS0A5LF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH23ZF07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1026

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 351 aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 408
           |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 704 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 647
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>emb|BX822251.1|CNS0A5UN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB23ZB11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1301

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 351  aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 408
            |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 1006 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 949
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>emb|BX824709.1|CNS0A5IA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH66ZG09 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1287

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 351  aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 408
            |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 1004 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 947
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>ref|NM_103923.1| Arabidopsis thaliana voltage-gated ion-selective channel AT1G50400
           mRNA, complete cds
          Length = 933

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 351 aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaa 403
           |||||||||||||| | ||||||   ||| || | ||||||||||||||||||
Sbjct: 914 aaaccaaacttgtaatccttcttcacatgatccacctctgcagatagaagaaa 862
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>gb|AC144931.29| Medicago truncatula clone mth2-22b18, complete sequence
          Length = 122819

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 563    caccttttcagaaactttttggacataacttaa 595
              ||||||||||||||| ||||| ||||| |||||
Sbjct: 103943 caccttttcagaaaccttttgaacatagcttaa 103911
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>gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete sequence
          Length = 151594

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 563   caccttttcagaaactttttggacataacttaa 595
             ||||||||||||||| ||||| ||||| |||||
Sbjct: 47653 caccttttcagaaaccttttgaacatagcttaa 47685
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>gb|AC154857.2| Mus musculus BAC clone RP23-16K21 from chromosome 13, complete sequence
          Length = 214859

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 113   tcagcttgttcaacaaaaaatcatg 137
             |||||||| ||||||||||||||||
Sbjct: 68524 tcagcttggtcaacaaaaaatcatg 68548
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>gb|AC102763.10| Mus musculus chromosome 8, clone RP24-500B21, complete sequence
          Length = 161528

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 122   tcaacaaaaaatcatggacgcccaaatgcccat 154
             ||||||||||||||||||| || ||||| ||||
Sbjct: 36591 tcaacaaaaaatcatggacaccaaaatgaccat 36559
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>emb|AL691437.7| Mouse DNA sequence from clone RP23-248J10 on chromosome 2, complete
             sequence
          Length = 115517

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 360   ttgtagttcttctttggatgg 380
             |||||||||||||||||||||
Sbjct: 82192 ttgtagttcttctttggatgg 82172
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>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    cagcttgttcaacaaaaaat 133
              ||||||||||||||||||||
Sbjct: 964398 cagcttgttcaacaaaaaat 964417
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>gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, near 17 cM, complete
             sequence
          Length = 98913

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 568   tttcagaaactttttggaca 587
             ||||||||||||||||||||
Sbjct: 68383 tttcagaaactttttggaca 68402
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>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete
             sequence
          Length = 129440

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 534   tggttatacataaagtcagt 553
             ||||||||||||||||||||
Sbjct: 32702 tggttatacataaagtcagt 32683
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>gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chromosome 2, complete
              sequence
          Length = 176398

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 655    gagaattaaatccaattcct 674
              ||||||||||||||||||||
Sbjct: 160978 gagaattaaatccaattcct 160959
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>emb|CR932665.1|CNS0KYDQ Paramecium tetraurelia, Small GTPase rab, putative, complete gene
          Length = 3001

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 652 agcgagaattaaatccaatt 671
           ||||||||||||||||||||
Sbjct: 522 agcgagaattaaatccaatt 503
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>ref|XM_727688.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301980.00.0)
           partial mRNA
          Length = 348

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 562 acaccttttcagaaactttt 581
           ||||||||||||||||||||
Sbjct: 209 acaccttttcagaaactttt 228
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>ref|XM_739719.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000618.02.0)
           partial mRNA
          Length = 618

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 562 acaccttttcagaaactttt 581
           ||||||||||||||||||||
Sbjct: 479 acaccttttcagaaactttt 498
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>emb|BX321882.7| Zebrafish DNA sequence from clone DKEYP-30F1 in linkage group 12,
             complete sequence
          Length = 187475

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    tccaacagccaaagagaaca 96
             ||||||||||||||||||||
Sbjct: 58462 tccaacagccaaagagaaca 58443
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>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 228052

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    aatgcccatgctatctaaag 165
              ||||||||||||||||||||
Sbjct: 136595 aatgcccatgctatctaaag 136576
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>emb|BX294135.1| Pirellula sp. strain 1 complete genome; segment 3/24
          Length = 340750

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 441    gcaacgacaccatttgagtcaatt 464
              |||||||||||||||| |||||||
Sbjct: 146366 gcaacgacaccatttgggtcaatt 146343
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>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              3/6
          Length = 317511

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    cagcttgttcaacaaaaaat 133
              ||||||||||||||||||||
Sbjct: 263562 cagcttgttcaacaaaaaat 263581
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>emb|AL161495.2|ATCHRIV7 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 7
          Length = 199615

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 568    tttcagaaactttttggaca 587
              ||||||||||||||||||||
Sbjct: 160719 tttcagaaactttttggaca 160700
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>gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence
          Length = 196097

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 655    gagaattaaatccaattcct 674
              ||||||||||||||||||||
Sbjct: 141152 gagaattaaatccaattcct 141133
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>gb|AC120781.23| Pan troglodytes clone rp43-28m17, complete sequence
          Length = 184706

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 655    gagaattaaatccaattcct 674
              ||||||||||||||||||||
Sbjct: 109899 gagaattaaatccaattcct 109918
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>gb|AC118585.18| Pan troglodytes clone rp43-26n14, complete sequence
          Length = 153334

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 655    gagaattaaatccaattcct 674
              ||||||||||||||||||||
Sbjct: 147967 gagaattaaatccaattcct 147986
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>emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184906

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 655    gagaattaaatccaattcct 674
              ||||||||||||||||||||
Sbjct: 111511 gagaattaaatccaattcct 111492
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>emb|BX649633.13| Zebrafish DNA sequence from clone CH211-127A20 in linkage group 18,
             complete sequence
          Length = 164724

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    tccaacagccaaagagaaca 96
             ||||||||||||||||||||
Sbjct: 96436 tccaacagccaaagagaaca 96455
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>gb|AC073869.5| Homo sapiens BAC clone RP11-109E12 from 2, complete sequence
          Length = 195280

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 655   gagaattaaatccaattcct 674
             ||||||||||||||||||||
Sbjct: 14344 gagaattaaatccaattcct 14325
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>dbj|AB021267.1| Arabidopsis thaliana copia-like retrotransposon AtRE2-2 gene for
            polyprotein, complete cds
          Length = 7342

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 568  tttcagaaactttttggaca 587
            ||||||||||||||||||||
Sbjct: 3109 tttcagaaactttttggaca 3128
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>dbj|AB021266.1| Arabidopsis thaliana copia-like retrotransposon AtRE2-1 gene for
            polyprotein, complete cds
          Length = 7281

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 568  tttcagaaactttttggaca 587
            ||||||||||||||||||||
Sbjct: 4099 tttcagaaactttttggaca 4118
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>dbj|AB021264.1| Arabidopsis thaliana copia-like retrotransposon AtRE2 gene for
            polyprotein, complete cds
          Length = 7989

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 568  tttcagaaactttttggaca 587
            ||||||||||||||||||||
Sbjct: 4116 tttcagaaactttttggaca 4135
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>emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-597A11 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185605

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 655    gagaattaaatccaattcct 674
              ||||||||||||||||||||
Sbjct: 121502 gagaattaaatccaattcct 121483
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>emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-254P21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 148065

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 655   gagaattaaatccaattcct 674
             ||||||||||||||||||||
Sbjct: 56718 gagaattaaatccaattcct 56737
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>emb|AL691444.9| Mouse DNA sequence from clone RP23-224E21 on chromosome 2, complete
              sequence
          Length = 182726

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     acagccaaagagaacattat 100
              ||||||||||||||||||||
Sbjct: 132145 acagccaaagagaacattat 132164
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>dbj|AP000533.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c60G3
          Length = 45597

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 655   gagaattaaatccaattcct 674
             ||||||||||||||||||||
Sbjct: 38522 gagaattaaatccaattcct 38541


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,021,876
Number of Sequences: 3902068
Number of extensions: 6021876
Number of successful extensions: 123416
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 123182
Number of HSP's gapped (non-prelim): 239
length of query: 689
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 666
effective length of database: 17,143,297,704
effective search space: 11417436270864
effective search space used: 11417436270864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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