ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5k02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC144625.3| Mus musculus BAC clone RP24-196P19 from chromosom... 42 0.41
2gb|AC124771.4| Mus musculus BAC clone RP23-28G12 from chromosome... 40 1.6
3ref|XM_628388.1| Cryptosporidium parvum Iowa II Pre-mRNA splicin... 40 1.6
4emb|BX511156.5| Zebrafish DNA sequence from clone DKEY-1M1 in li... 40 1.6
5emb|BX322593.12| Zebrafish DNA sequence from clone CH211-249E14 ... 40 1.6
6ref|NM_129261.4| Arabidopsis thaliana kinase AT2G37050 transcrip... 38 6.4
7ref|NM_001036421.1| Arabidopsis thaliana unknown protein AT2G370... 38 6.4
8ref|NM_001036422.1| Arabidopsis thaliana unknown protein AT2G370... 38 6.4
9gb|AC123751.6| Mus musculus chromosome 8, clone RP24-187F1, comp... 38 6.4
10gb|AC171894.2| Capitella capitata clone JGIBGZA-13N6, complete s... 38 6.4
11gb|AC092117.4| Homo sapiens chromosome 16 clone CTD-2270P14, com... 38 6.4
12gb|AC138133.26| Medicago truncatula clone mth2-9o2, complete seq... 38 6.4
13gb|AC126790.38| Medicago truncatula clone mth2-10d14, complete s... 38 6.4
14emb|AL162373.16| Human DNA sequence from clone RP11-272M24 on ch... 38 6.4
15gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8 map ... 38 6.4
16gb|AC006260.4| Arabidopsis thaliana chromosome 2 clone T2N18 map... 38 6.4
17gb|AC093517.3| Homo sapiens chromosome 16 clone CTD-2593F12, com... 38 6.4
18gb|BT002950.1| Arabidopsis thaliana clone RAFL15-04-A19 (R20321)... 38 6.4
19gb|AC133197.3| Mus musculus BAC clone RP23-228E15 from 8, comple... 38 6.4
20gb|AC005375.4|AC005375 Homo sapiens chromosome 17, clone hRPK.38... 38 6.4
21emb|AL807823.6| Mouse DNA sequence from clone RP23-328E6 on chro... 38 6.4
22emb|AL672271.9| Mouse DNA sequence from clone RP23-450H23 on chr... 38 6.4

>gb|AC144625.3| Mus musculus BAC clone RP24-196P19 from chromosome 5, complete sequence
          Length = 145348

 Score = 42.1 bits (21), Expect = 0.41
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     ttacanataaaccacagcataata 25
             ||||| ||||||||||||||||||
Sbjct: 39991 ttacacataaaccacagcataata 40014



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>gb|AC124771.4| Mus musculus BAC clone RP23-28G12 from chromosome 1, complete sequence
          Length = 209463

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 12     accacagcataatatataacgtta 35
              ||||||||||||||||||| ||||
Sbjct: 182426 accacagcataatatataaggtta 182403



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>ref|XM_628388.1| Cryptosporidium parvum Iowa II Pre-mRNA splicing factor SF3a.
           2xSWAP domain protein (cgd7_2160), partial mRNA
          Length = 1389

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 113 gcaaacatgagtaatcaagt 132
           ||||||||||||||||||||
Sbjct: 1   gcaaacatgagtaatcaagt 20



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>emb|BX511156.5| Zebrafish DNA sequence from clone DKEY-1M1 in linkage group 2, complete
             sequence
          Length = 158656

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 102   cacatacgtaagcaaacatgagtaatca 129
             |||| |||||| ||||||||||||||||
Sbjct: 18714 cacagacgtaaacaaacatgagtaatca 18741



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>emb|BX322593.12| Zebrafish DNA sequence from clone CH211-249E14 in linkage group 2,
             complete sequence
          Length = 82337

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 102   cacatacgtaagcaaacatgagtaatca 129
             |||| |||||| ||||||||||||||||
Sbjct: 10016 cacagacgtaaacaaacatgagtaatca 10043



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>ref|NM_129261.4| Arabidopsis thaliana kinase AT2G37050 transcript variant AT2G37050.1
            mRNA, complete cds
          Length = 3355

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 79   tacctgagcagcctgagta 97
            |||||||||||||||||||
Sbjct: 1215 tacctgagcagcctgagta 1233



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>ref|NM_001036421.1| Arabidopsis thaliana unknown protein AT2G37050 transcript variant
            AT2G37050.2 mRNA, complete cds
          Length = 3430

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 79   tacctgagcagcctgagta 97
            |||||||||||||||||||
Sbjct: 1215 tacctgagcagcctgagta 1233



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>ref|NM_001036422.1| Arabidopsis thaliana unknown protein AT2G37050 transcript variant
            AT2G37050.3 mRNA, complete cds
          Length = 3358

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 79   tacctgagcagcctgagta 97
            |||||||||||||||||||
Sbjct: 1215 tacctgagcagcctgagta 1233



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>gb|AC123751.6| Mus musculus chromosome 8, clone RP24-187F1, complete sequence
          Length = 159523

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    acctgagcagcctgagtaa 98
             |||||||||||||||||||
Sbjct: 81204 acctgagcagcctgagtaa 81186



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>gb|AC171894.2| Capitella capitata clone JGIBGZA-13N6, complete sequence
          Length = 36228

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                       
Query: 1     attacanataaaccacagcataatat 26
             |||||| ||||||||||| |||||||
Sbjct: 17406 attacatataaaccacagaataatat 17381



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>gb|AC092117.4| Homo sapiens chromosome 16 clone CTD-2270P14, complete sequence
          Length = 211606

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 78    ttacctgagcagcctgagt 96
             |||||||||||||||||||
Sbjct: 59030 ttacctgagcagcctgagt 59048



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>gb|AC138133.26| Medicago truncatula clone mth2-9o2, complete sequence
          Length = 149166

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 112    agcaaacatgagtaatcaa 130
              |||||||||||||||||||
Sbjct: 124005 agcaaacatgagtaatcaa 123987



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>gb|AC126790.38| Medicago truncatula clone mth2-10d14, complete sequence
          Length = 127447

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 112   agcaaacatgagtaatcaa 130
             |||||||||||||||||||
Sbjct: 74359 agcaaacatgagtaatcaa 74341



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>emb|AL162373.16| Human DNA sequence from clone RP11-272M24 on chromosome 13 Contains a
             novel pseudogene, complete sequence
          Length = 176797

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 67    taatatgctcattacctga 85
             |||||||||||||||||||
Sbjct: 73975 taatatgctcattacctga 73993



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>gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete sequence
          Length = 134151

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 79     tacctgagcagcctgagta 97
              |||||||||||||||||||
Sbjct: 131714 tacctgagcagcctgagta 131732



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>gb|AC006260.4| Arabidopsis thaliana chromosome 2 clone T2N18 map ve018, complete
             sequence
          Length = 80736

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 79    tacctgagcagcctgagta 97
             |||||||||||||||||||
Sbjct: 68424 tacctgagcagcctgagta 68406



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>gb|AC093517.3| Homo sapiens chromosome 16 clone CTD-2593F12, complete sequence
          Length = 160606

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 78    ttacctgagcagcctgagt 96
             |||||||||||||||||||
Sbjct: 52450 ttacctgagcagcctgagt 52468



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>gb|BT002950.1| Arabidopsis thaliana clone RAFL15-04-A19 (R20321) putative receptor
            protein kinase (At2g37050) mRNA, complete cds
          Length = 3224

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 79   tacctgagcagcctgagta 97
            |||||||||||||||||||
Sbjct: 1073 tacctgagcagcctgagta 1091



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>gb|AC133197.3| Mus musculus BAC clone RP23-228E15 from 8, complete sequence
          Length = 197899

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    acctgagcagcctgagtaa 98
             |||||||||||||||||||
Sbjct: 42600 acctgagcagcctgagtaa 42582



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>gb|AC005375.4|AC005375 Homo sapiens chromosome 17, clone hRPK.388_F_14, complete sequence
          Length = 149030

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 111   aagcaaacatgagtaatca 129
             |||||||||||||||||||
Sbjct: 55763 aagcaaacatgagtaatca 55781



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>emb|AL807823.6| Mouse DNA sequence from clone RP23-328E6 on chromosome 4, complete
             sequence
          Length = 216239

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 82    ctgagcagcctgagtaata 100
             |||||||||||||||||||
Sbjct: 28979 ctgagcagcctgagtaata 28961



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>emb|AL672271.9| Mouse DNA sequence from clone RP23-450H23 on chromosome X, complete
              sequence
          Length = 196613

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 74     ctcattacctgagcagcctgagt 96
              ||||| |||||||||||||||||
Sbjct: 121055 ctcatcacctgagcagcctgagt 121077


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 846,156
Number of Sequences: 3902068
Number of extensions: 846156
Number of successful extensions: 51680
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51651
Number of HSP's gapped (non-prelim): 29
length of query: 135
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 114
effective length of database: 17,151,101,840
effective search space: 1955225609760
effective search space used: 1955225609760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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