| Clone Name | rbags5k02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC144625.3| Mus musculus BAC clone RP24-196P19 from chromosome 5, complete sequence Length = 145348 Score = 42.1 bits (21), Expect = 0.41 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 ttacanataaaccacagcataata 25 ||||| |||||||||||||||||| Sbjct: 39991 ttacacataaaccacagcataata 40014
>gb|AC124771.4| Mus musculus BAC clone RP23-28G12 from chromosome 1, complete sequence Length = 209463 Score = 40.1 bits (20), Expect = 1.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 accacagcataatatataacgtta 35 ||||||||||||||||||| |||| Sbjct: 182426 accacagcataatatataaggtta 182403
>ref|XM_628388.1| Cryptosporidium parvum Iowa II Pre-mRNA splicing factor SF3a. 2xSWAP domain protein (cgd7_2160), partial mRNA Length = 1389 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 gcaaacatgagtaatcaagt 132 |||||||||||||||||||| Sbjct: 1 gcaaacatgagtaatcaagt 20
>emb|BX511156.5| Zebrafish DNA sequence from clone DKEY-1M1 in linkage group 2, complete sequence Length = 158656 Score = 40.1 bits (20), Expect = 1.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 102 cacatacgtaagcaaacatgagtaatca 129 |||| |||||| |||||||||||||||| Sbjct: 18714 cacagacgtaaacaaacatgagtaatca 18741
>emb|BX322593.12| Zebrafish DNA sequence from clone CH211-249E14 in linkage group 2, complete sequence Length = 82337 Score = 40.1 bits (20), Expect = 1.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 102 cacatacgtaagcaaacatgagtaatca 129 |||| |||||| |||||||||||||||| Sbjct: 10016 cacagacgtaaacaaacatgagtaatca 10043
>ref|NM_129261.4| Arabidopsis thaliana kinase AT2G37050 transcript variant AT2G37050.1 mRNA, complete cds Length = 3355 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 tacctgagcagcctgagta 97 ||||||||||||||||||| Sbjct: 1215 tacctgagcagcctgagta 1233
>ref|NM_001036421.1| Arabidopsis thaliana unknown protein AT2G37050 transcript variant AT2G37050.2 mRNA, complete cds Length = 3430 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 tacctgagcagcctgagta 97 ||||||||||||||||||| Sbjct: 1215 tacctgagcagcctgagta 1233
>ref|NM_001036422.1| Arabidopsis thaliana unknown protein AT2G37050 transcript variant AT2G37050.3 mRNA, complete cds Length = 3358 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 tacctgagcagcctgagta 97 ||||||||||||||||||| Sbjct: 1215 tacctgagcagcctgagta 1233
>gb|AC123751.6| Mus musculus chromosome 8, clone RP24-187F1, complete sequence Length = 159523 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 acctgagcagcctgagtaa 98 ||||||||||||||||||| Sbjct: 81204 acctgagcagcctgagtaa 81186
>gb|AC171894.2| Capitella capitata clone JGIBGZA-13N6, complete sequence Length = 36228 Score = 38.2 bits (19), Expect = 6.4 Identities = 24/26 (92%) Strand = Plus / Minus Query: 1 attacanataaaccacagcataatat 26 |||||| ||||||||||| ||||||| Sbjct: 17406 attacatataaaccacagaataatat 17381
>gb|AC092117.4| Homo sapiens chromosome 16 clone CTD-2270P14, complete sequence Length = 211606 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 ttacctgagcagcctgagt 96 ||||||||||||||||||| Sbjct: 59030 ttacctgagcagcctgagt 59048
>gb|AC138133.26| Medicago truncatula clone mth2-9o2, complete sequence Length = 149166 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 112 agcaaacatgagtaatcaa 130 ||||||||||||||||||| Sbjct: 124005 agcaaacatgagtaatcaa 123987
>gb|AC126790.38| Medicago truncatula clone mth2-10d14, complete sequence Length = 127447 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 112 agcaaacatgagtaatcaa 130 ||||||||||||||||||| Sbjct: 74359 agcaaacatgagtaatcaa 74341
>emb|AL162373.16| Human DNA sequence from clone RP11-272M24 on chromosome 13 Contains a novel pseudogene, complete sequence Length = 176797 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 67 taatatgctcattacctga 85 ||||||||||||||||||| Sbjct: 73975 taatatgctcattacctga 73993
>gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete sequence Length = 134151 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 tacctgagcagcctgagta 97 ||||||||||||||||||| Sbjct: 131714 tacctgagcagcctgagta 131732
>gb|AC006260.4| Arabidopsis thaliana chromosome 2 clone T2N18 map ve018, complete sequence Length = 80736 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 tacctgagcagcctgagta 97 ||||||||||||||||||| Sbjct: 68424 tacctgagcagcctgagta 68406
>gb|AC093517.3| Homo sapiens chromosome 16 clone CTD-2593F12, complete sequence Length = 160606 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 ttacctgagcagcctgagt 96 ||||||||||||||||||| Sbjct: 52450 ttacctgagcagcctgagt 52468
>gb|BT002950.1| Arabidopsis thaliana clone RAFL15-04-A19 (R20321) putative receptor protein kinase (At2g37050) mRNA, complete cds Length = 3224 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 tacctgagcagcctgagta 97 ||||||||||||||||||| Sbjct: 1073 tacctgagcagcctgagta 1091
>gb|AC133197.3| Mus musculus BAC clone RP23-228E15 from 8, complete sequence Length = 197899 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 acctgagcagcctgagtaa 98 ||||||||||||||||||| Sbjct: 42600 acctgagcagcctgagtaa 42582
>gb|AC005375.4|AC005375 Homo sapiens chromosome 17, clone hRPK.388_F_14, complete sequence Length = 149030 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 aagcaaacatgagtaatca 129 ||||||||||||||||||| Sbjct: 55763 aagcaaacatgagtaatca 55781
>emb|AL807823.6| Mouse DNA sequence from clone RP23-328E6 on chromosome 4, complete sequence Length = 216239 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 ctgagcagcctgagtaata 100 ||||||||||||||||||| Sbjct: 28979 ctgagcagcctgagtaata 28961
>emb|AL672271.9| Mouse DNA sequence from clone RP23-450H23 on chromosome X, complete sequence Length = 196613 Score = 38.2 bits (19), Expect = 6.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 74 ctcattacctgagcagcctgagt 96 ||||| ||||||||||||||||| Sbjct: 121055 ctcatcacctgagcagcctgagt 121077 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 846,156 Number of Sequences: 3902068 Number of extensions: 846156 Number of successful extensions: 51680 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51651 Number of HSP's gapped (non-prelim): 29 length of query: 135 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 114 effective length of database: 17,151,101,840 effective search space: 1955225609760 effective search space used: 1955225609760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)