| Clone Name | rbags5k01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clone DB4) Length = 637 Score = 890 bits (449), Expect = 0.0 Identities = 482/495 (97%) Strand = Plus / Minus Query: 1 gaacaagggaaaaagacaaatacataagtaagatgatacattggcttccatacagctgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 563 gaacaagggaaaaagacaaatacataagtaagatgatacattggcttccatacagctgat 504 Query: 61 ggtatcaagattattcaagacaaaatgactatacgaccttggccatagaaatcatgcaca 120 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 503 ggtatcaagattattcaagacaaaatgacaatacgaccatggccatagaaatcatgcaca 444 Query: 121 agaaggcatgattaggcttcaacagactgaatgactgcaccatcattacagaaacgggca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 443 agaaggcatgattaggcttcaacagactgaatgactgcaccatcattacagaaacgggca 384 Query: 181 catgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggaaaacattgtcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 383 catgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggaaaacattgtcc 324 Query: 241 atgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacatctggttca 300 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 323 atgttgtcacagacagaattcctgcatccaatggtgcagtactgcgtgacatctggttca 264 Query: 301 ccggattcagggataagattcagtttaggatagtcactagggcattttggaccacttatg 360 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 263 ccggattcagggagaagattcagtttaggatagtcactagggcattttggaccacttatg 204 Query: 361 attttacaacgacaagcacctgcgcagactggacgggaaccacccgcgaaacggcaagtg 420 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 203 attttacaacgacaagcacctgcgcagactggacgggaaccacccgcgaaatggcaagtg 144 Query: 421 ttgtancantttctagctaacgtgtccttgcancaactttntnccttcacctgaacctgc 480 ||||| || ||||||||||||||||||||||| ||||||| | ||| |||||| |||||| Sbjct: 143 ttgtagcagtttctagctaacgtgtccttgcagcaactttttccctccacctggacctgc 84 Query: 481 tccanaactaaaccc 495 |||| |||||||||| Sbjct: 83 tccagaactaaaccc 69
>emb|X05587.1|HVTHIOR2 Barley mRNA for leaf-specific thionin (clone DC4) Length = 658 Score = 850 bits (429), Expect = 0.0 Identities = 477/495 (96%) Strand = Plus / Minus Query: 1 gaacaagggaaaaagacaaatacataagtaagatgatacattggcttccatacagctgat 60 |||||||||||||| | |||| |||||||||||||||||||| |||| ||||||||||| Sbjct: 570 gaacaagggaaaaacagaaatgcataagtaagatgatacatttccttcgatacagctgat 511 Query: 61 ggtatcaagattattcaagacaaaatgactatacgaccttggccatagaaatcatgcaca 120 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 510 ggtatcaagattattcaagacaaaatgacaatacgaccttggccatagaaatcatgcaca 451 Query: 121 agaaggcatgattaggcttcaacagactgaatgactgcaccatcattacagaaacgggca 180 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 450 agaaggcatgattaggcttcaacagactgaatgactgcaccatcattacaaaaacgggca 391 Query: 181 catgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggaaaacattgtcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 390 catgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggaaaacattgtcc 331 Query: 241 atgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacatctggttca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 330 atgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacatctggttca 271 Query: 301 ccggattcagggataagattcagtttaggatagtcactagggcattttggaccacttatg 360 ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 270 ccggattcagggagaagattaagtttaggatagtcactagggcattttggaccacttatg 211 Query: 361 attttacaacgacaagcacctgcgcagactggacgggaaccacccgcgaaacggcaagtg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 210 attttacaacgacaagcacctgcgcagactggacgggaaccacccgcgaaacggcaagtg 151 Query: 421 ttgtancantttctagctaacgtgtccttgcancaactttntnccttcacctgaacctgc 480 ||||| || ||||||||||||||||||||||| ||||||| | ||| |||||| |||||| Sbjct: 150 ttgtagcagtttctagctaacgtgtccttgcagcaactttttccctccacctggacctgc 91 Query: 481 tccanaactaaaccc 495 |||| |||||||||| Sbjct: 90 tccagaactaaaccc 76
>emb|X05588.1|HVTHIOR3 Barley mRNA for leaf-specific thionin (clone DF2) Length = 453 Score = 670 bits (338), Expect = 0.0 Identities = 377/390 (96%) Strand = Plus / Minus Query: 1 gaacaagggaaaaagacaaatacataagtaagatgatacattggcttccatacagctgat 60 |||||||||||||| | |||| |||||||||||||||||||| |||| ||||||||||| Sbjct: 390 gaacaagggaaaaacagaaatgcataagtaagatgatacatttccttcgatacagctgat 331 Query: 61 ggtatcaagattattcaagacaaaatgactatacgaccttggccatagaaatcatgcaca 120 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 330 ggtatcaagattattcaagacaaaatgacaatacgaccttggccatagaaatcatgcaca 271 Query: 121 agaaggcatgattaggcttcaacagactgaatgactgcaccatcattacagaaacgggca 180 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 270 agaaggcatgattaggattcaacagactgaatgactgcaccatcattacaaaaacgggca 211 Query: 181 catgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggaaaacattgtcc 240 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 210 catgcgttgctgcagagtcccatgtcgaatttcatctcttggccatggaaaacattgtcc 151 Query: 241 atgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacatctggttca 300 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 150 atgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacatcgggttca 91 Query: 301 ccggattcagggataagattcagtttaggatagtcactagggcattttggaccacttatg 360 ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 90 ccggattcagggagaagattaagtttaggatagtcactagggcattttggaccacttatg 31 Query: 361 attttacaacgacaagcacctgcgcagact 390 |||||||||||||||||||||||||||||| Sbjct: 30 attttacaacgacaagcacctgcgcagact 1
>gb|M19048.1|BLYTHNC Barley leaf specific thionin mRNA, complete cds, clone pKG1940 Length = 663 Score = 513 bits (259), Expect = e-142 Identities = 378/417 (90%), Gaps = 1/417 (0%) Strand = Plus / Minus Query: 18 aaatacataagtaagatgatacattggcttccatacagctgatggtatcaagattattca 77 |||||||||| |||||||||||||| ||||| || | | |||||||||||||||| || | Sbjct: 570 aaatacataactaagatgatacatttgcttcgat-ctggtgatggtatcaagattgttga 512 Query: 78 agacaaaatgactatacgaccttggccatagaaatcatgcacaagaaggcatgattaggc 137 | | |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 511 acagaaaatgacaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggc 452 Query: 138 ttcaacagactgaatgactgcaccatcattacagaaacgggcacatgcgttgctgcagag 197 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 451 ttcaacagactgaatgacttcaccatcattacagaaacgggcacatgcgttgctgcagag 392 Query: 198 tcccatgtcgaatttcatctcttggccacggaaaacattgtccatgttgtcacagacaga 257 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 391 tcccatgtcgaatttcatctcttggccacgggaaacattgtccatgttgtcacagacgga 332 Query: 258 attcctgcatccaatggtgcagtactgagtgacatctggttcaccggattcagggataag 317 | ||| ||||||||| |||||||||| ||| ||| |||||||||||||||||||| ||| Sbjct: 331 agtccggcatccaattgtgcagtactcagtcgcatttggttcaccggattcagggagaag 272 Query: 318 attcagtttaggatagtcactagggcattttggaccacttatgattttacaacgacaagc 377 |||||| ||||||||||| ||||| ||| |||| || |||||||||||||||| |||||| Sbjct: 271 attcagcttaggatagtccctaggacatgttgggccgcttatgattttacaaccacaagc 212 Query: 378 acctgcgcagactggacgggaaccacccgcgaaacggcaagtgttgtancantttct 434 | |||||||||||| ||||||||||| ||||||||||| | |||||| || ||||| Sbjct: 211 agttgcgcagactggtcgggaaccaccagcgaaacggcaggcgttgtagcagtttct 155
>gb|M19047.1|BLYTHNB Barley leaf specific thionin mRNA, complete cds, clone pKG1348 Length = 608 Score = 513 bits (259), Expect = e-142 Identities = 378/417 (90%), Gaps = 1/417 (0%) Strand = Plus / Minus Query: 18 aaatacataagtaagatgatacattggcttccatacagctgatggtatcaagattattca 77 |||||||||| |||||||||||||| ||||| || | | |||||||||||||||| || | Sbjct: 570 aaatacataactaagatgatacatttgcttcgat-ctggtgatggtatcaagattgttga 512 Query: 78 agacaaaatgactatacgaccttggccatagaaatcatgcacaagaaggcatgattaggc 137 | | |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 511 acagaaaatgacaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggc 452 Query: 138 ttcaacagactgaatgactgcaccatcattacagaaacgggcacatgcgttgctgcagag 197 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 451 ttcaacagactgaatgacttcaccatcattacagaaacgggcacatgcgttgctgcagag 392 Query: 198 tcccatgtcgaatttcatctcttggccacggaaaacattgtccatgttgtcacagacaga 257 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 391 tcccatgtcgaatttcatctcttggccacgggaaacattgtccatgttgtcacagacgga 332 Query: 258 attcctgcatccaatggtgcagtactgagtgacatctggttcaccggattcagggataag 317 | ||| ||||||||| |||||||||| ||| ||| |||||||||||||||||||| ||| Sbjct: 331 agtccggcatccaattgtgcagtactcagtcgcatttggttcaccggattcagggagaag 272 Query: 318 attcagtttaggatagtcactagggcattttggaccacttatgattttacaacgacaagc 377 |||||| ||||||||||| ||||| ||| |||| || |||||||||||||||| |||||| Sbjct: 271 attcagcttaggatagtccctaggacatgttgggccgcttatgattttacaaccacaagc 212 Query: 378 acctgcgcagactggacgggaaccacccgcgaaacggcaagtgttgtancantttct 434 | |||||||||||| ||||||||||| ||||||||||| | |||||| || ||||| Sbjct: 211 agttgcgcagactggtcgggaaccaccagcgaaacggcaggcgttgtagcagtttct 155
>emb|X05589.1|HVTHIOR4 Barley mRNA for leaf-specific thionin (clone DG3) Length = 544 Score = 507 bits (256), Expect = e-140 Identities = 425/479 (88%), Gaps = 3/479 (0%) Strand = Plus / Minus Query: 18 aaatacataagtaagatgatacattggcttccatacagctgatggtatcaagattattca 77 |||||||||| |||||||||||||| ||||| || | |||||||||||||||| || | Sbjct: 497 aaatacataactaagatgatacatttgcttcgatgtgg-tgatggtatcaagattgttga 439 Query: 78 agacaaaatgactatacgaccttggccatagaaatcatgcacaagaaggcatgattaggc 137 | | |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 438 acagaaaatgacaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggc 379 Query: 138 ttcaacagactgaatgactgcaccatcattacagaaacgggcacatgcgttgctgcagag 197 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 378 ttcaagagactgaatgacttcaccatcattacagaaacgggcacatgcgttgctgcagag 319 Query: 198 tcccatgtcgaatttcatctcttggccacggaaaacattgtccatgttgtcacagacaga 257 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 318 tcccatgtcgaatttcatctcttggccacgggaaacattgtccatgttgtcacagacgga 259 Query: 258 attcctgcatccaatggtgcagtactgagtgacatctggttcaccggattcagggataag 317 | ||||||||||||| |||||||||| ||| ||| |||||||||||||||||||| ||| Sbjct: 258 agtcctgcatccaattgtgcagtactcagtcgcatttggttcaccggattcagggagaag 199 Query: 318 attcagtttaggatagtcactagggcattttggaccacttatgattttacaacgacaagc 377 |||||| ||||||||||| ||||| ||| |||| || |||||||||||||||| |||||| Sbjct: 198 attcagcttaggatagtccctaggacatgttgggccgcttatgattttacaaccacaagc 139 Query: 378 acctgcgcagactggacgggaaccacccgcgaaacggcaagtgttgtancantttctagc 437 | |||||||||||| ||||||||||| ||||||||||| | |||||| || ||||| | Sbjct: 138 agttgcgcagactggtcgggaaccaccagcgaaacggcaggcgttgtagcagtttctgcc 79 Query: 438 taacgtgtccttgcancaactttntnccttc-acctgaacctgctccanaactaaaccc 495 ||||| |||||| ||||| | | ||||| || || |||||||||| |||||||||| Sbjct: 78 cgtcgtgttcttgcagcaactct-tgccttctacttggacctgctccagaactaaaccc 21
>emb|X05590.1|HVTHIOR5 Barley mRNA for leaf-specific thionin (clone DD3) Length = 491 Score = 492 bits (248), Expect = e-136 Identities = 369/408 (90%), Gaps = 1/408 (0%) Strand = Plus / Minus Query: 18 aaatacataagtaagatgatacattggcttccatacagctgatggtatcaagattattca 77 |||||||||| |||||||||||||| ||||| || | | |||||||||||||||| || | Sbjct: 411 aaatacataactaagatgatacatttgcttcgat-ctggtgatggtatcaagattgttga 353 Query: 78 agacaaaatgactatacgaccttggccatagaaatcatgcacaagaaggcatgattaggc 137 | | ||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 352 acagaaaatgaaaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggc 293 Query: 138 ttcaacagactgaatgactgcaccatcattacagaaacgggcacatgcgttgctgcagag 197 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 292 ttcaacagactgaatgacttcaccatcattacagaaacgggcacatgcgttgctgcagag 233 Query: 198 tcccatgtcgaatttcatctcttggccacggaaaacattgtccatgttgtcacagacaga 257 ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| || Sbjct: 232 tcccatgtcgaatttcatctcttggccacgggaaacattgtccaggttgtcacagacgga 173 Query: 258 attcctgcatccaatggtgcagtactgagtgacatctggttcaccggattcagggataag 317 | ||||||||||||| |||||||||| ||| ||| |||||||||||||||||||| ||| Sbjct: 172 agtcctgcatccaattgtgcagtactcagtcgcatttggttcaccggattcagggagaag 113 Query: 318 attcagtttaggatagtcactagggcattttggaccacttatgattttacaacgacaagc 377 |||||| ||||||||||| ||||| || |||| || |||||||||||||||| |||||| Sbjct: 112 attcagcttaggatagtccctaggacaggttgggccgcttatgattttacaaccacaagc 53 Query: 378 acctgcgcagactggacgggaaccacccgcgaaacggcaagtgttgta 425 | |||||||||||| ||||||||||| ||||||||||| | |||||| Sbjct: 52 agttgcgcagactggtcgggaaccaccggcgaaacggcaggcgttgta 5
>gb|M19046.1|BLYTHNA Barley leaf specific thionin mRNA, complete cds, clone pKG2872 Length = 540 Score = 492 bits (248), Expect = e-136 Identities = 345/378 (91%) Strand = Plus / Minus Query: 57 tgatggtatcaagattattcaagacaaaatgactatacgaccttggccatagaaatcatg 116 |||||||||||||||| || || | |||||||| | |||||||||||||||||||||||| Sbjct: 532 tgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatg 473 Query: 117 cacaagaaggcatgattaggcttcaacagactgaatgactgcaccatcattacagaaacg 176 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 472 cccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacg 413 Query: 177 ggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggaaaacatt 236 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 412 ggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaaacatt 353 Query: 237 gtccatgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacatctgg 296 |||||||||||||||||| ||| ||| ||||||||| |||||||||| ||| ||| ||| Sbjct: 352 gtccatgttgtcacagacggaagtccggcatccaattgtgcagtactcagtcgcatttgg 293 Query: 297 ttcaccggattcagggataagattcagtttaggatagtcactagggcattttggaccact 356 ||||||||||||||||| ||||||||| ||||||||||| ||||| ||| |||| || || Sbjct: 292 ttcaccggattcagggagaagattcagcttaggatagtccctaggacatgttgggccgct 233 Query: 357 tatgattttacaacgacaagcacctgcgcagactggacgggaaccacccgcgaaacggca 416 |||||||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||| Sbjct: 232 tatgattttacaaccacaagcagttgcgcagactggtcgggaaccaccagcgaaacggca 173 Query: 417 agtgttgtancantttct 434 | |||||| || ||||| Sbjct: 172 ggcgttgtagcagtttct 155
>gb|L36882.1|BLYBTH6T Hordeum vulgare thionin (bth6) gene, complete cds Length = 2406 Score = 454 bits (229), Expect = e-124 Identities = 232/233 (99%) Strand = Plus / Minus Query: 1 gaacaagggaaaaagacaaatacataagtaagatgatacattggcttccatacagctgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2263 gaacaagggaaaaagacaaatacataagtaagatgatacattggcttccatacagctgat 2204 Query: 61 ggtatcaagattattcaagacaaaatgactatacgaccttggccatagaaatcatgcaca 120 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2203 ggtatcaagattattcaagacaaaatgacaatacgaccttggccatagaaatcatgcaca 2144 Query: 121 agaaggcatgattaggcttcaacagactgaatgactgcaccatcattacagaaacgggca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2143 agaaggcatgattaggcttcaacagactgaatgactgcaccatcattacagaaacgggca 2084 Query: 181 catgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggaaaac 233 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2083 catgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggaaaac 2031 Score = 323 bits (163), Expect = 3e-85 Identities = 184/193 (95%) Strand = Plus / Minus Query: 300 accggattcagggataagattcagtttaggatagtcactagggcattttggaccacttat 359 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1776 accggattcagggagaagattcagtttaggatagtcactagggcattttggaccacttat 1717 Query: 360 gattttacaacgacaagcacctgcgcagactggacgggaaccacccgcgaaacggcaagt 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1716 gattttacaacgacaagcacctgcgcagactggacgggaaccacccgcgaaacggcaagt 1657 Query: 420 gttgtancantttctagctaacgtgtccttgcancaactttntnccttcacctgaacctg 479 |||||| || ||||||||||||||||||||||| ||||||| | ||| |||||| ||||| Sbjct: 1656 gttgtagcagtttctagctaacgtgtccttgcagcaactttttccctccacctggacctg 1597 Query: 480 ctccanaactaaa 492 ||||| ||||||| Sbjct: 1596 ctccagaactaaa 1584 Score = 131 bits (66), Expect = 2e-27 Identities = 69/70 (98%) Strand = Plus / Minus Query: 233 cattgtccatgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacat 292 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1937 cattgtccatgttgtcacagacagaattcgtgcatccaatggtgcagtactgagtgacat 1878 Query: 293 ctggttcacc 302 |||||||||| Sbjct: 1877 ctggttcacc 1868
>emb|AJ508712.1|HVU508712 Hordeum vulgare mRNA for putative thionin Length = 414 Score = 392 bits (198), Expect = e-106 Identities = 324/365 (88%), Gaps = 2/365 (0%) Strand = Plus / Minus Query: 132 ttaggcttcaacagactgaatgactgcaccatcattacagaaacgggcacatgcgttgct 191 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 414 ttaggcttcaacagactgaatgacatcaccatcattacagaaacgggcacatgcgttgct 355 Query: 192 gcagagtcccatgtcgaatttcatctcttggccacggaaaacattgtccatgttgtcaca 251 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 354 gcagagtcccatgtcgaatttcatctcttggccacgggaaacattgtccatgttgtcaca 295 Query: 252 gacagaattcctgcatccaatggtgcagtactgagtgacatctggttcaccggattcagg 311 ||| ||| ||||||||||||| |||||||||| ||| ||| |||||||||||||||||| Sbjct: 294 gacggaagtcctgcatccaattgtgcagtactcagtcgcatttggttcaccggattcagg 235 Query: 312 gataagattcagtttaggatagtcactagggcattttggaccacttatgattttacaacg 371 || ||||||||| ||||||||||| ||||| ||| |||| || |||||||||||||||| Sbjct: 234 gagaagattcagcttaggatagtccctaggacatgttgggccgcttatgattttacaacc 175 Query: 372 acaagcacctgcgcagactggacgggaaccacccgcgaaacggcaagtgttgtancantt 431 ||||||| |||||||||||| ||||||||||| |||||| |||| | |||||| || || Sbjct: 174 acaagcagttgcgcagactggtcgggaaccaccggcgaaatggcaggcgttgtagcagtt 115 Query: 432 tctagctaacgtgtccttgcancaactttntnccttc-acctgaacctgctccanaacta 490 ||| | ||||| |||||| ||||| | | ||||| || || |||||||||| ||||| Sbjct: 114 tctgcccgtcgtgttcttgcagcaactct-tgccttctacttggacctgctccagaacta 56 Query: 491 aaccc 495 ||||| Sbjct: 55 aaccc 51
>gb|L36883.1|BLYBTH7T Hordeum vulgare thionin (BTH7) gene, complete cds Length = 2259 Score = 272 bits (137), Expect = 1e-69 Identities = 167/177 (94%) Strand = Plus / Minus Query: 57 tgatggtatcaagattattcaagacaaaatgactatacgaccttggccatagaaatcatg 116 |||||||||||||||| || || | |||||||| | |||||||||||||||||||||||| Sbjct: 2230 tgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatg 2171 Query: 117 cacaagaaggcatgattaggcttcaacagactgaatgactgcaccatcattacagaaacg 176 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2170 cccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacg 2111 Query: 177 ggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggaaaac 233 |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 2110 ggcacatgcgttgctgcagagtcccatgtcaaatttcatctcttggccacgggaaac 2054 Score = 139 bits (70), Expect = 1e-29 Identities = 166/197 (84%), Gaps = 2/197 (1%) Strand = Plus / Minus Query: 300 accggattcagggataagattcagtttaggatagtcactagggcattttggaccacttat 359 |||||||||||||| ||||||||| ||||||||||| ||||| || |||| || ||||| Sbjct: 1797 accggattcagggagaagattcagcttaggatagtccctaggacaggttgggccgcttat 1738 Query: 360 gattttacaacgacaagcacctgcgcagactggacgggaaccacccgcgaaacggcaagt 419 ||||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||| | Sbjct: 1737 gattttacaaccacaagcagttgcgcagactggtcgggaaccaccggcgaaacggcaggc 1678 Query: 420 gttgtancantttctagctaacgtgtccttgcancaactttntnccttc-acctgaacct 478 |||||| || ||||| | ||||| |||||| ||||| | | ||||| || || |||| Sbjct: 1677 gttgtagcagtttctgcccgtcgtgttcttgcagcaactct-tgccttctacttggacct 1619 Query: 479 gctccanaactaaaccc 495 |||||| |||||||||| Sbjct: 1618 gctccagaactaaaccc 1602 Score = 83.8 bits (42), Expect = 5e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 233 cattgtccatgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacat 292 ||||||||||||||||||| || ||| ||||||||||||| |||||||||| ||| |||| Sbjct: 1963 cattgtccatgttgtcacaaacggaagtcctgcatccaattgtgcagtactcagtcacat 1904 Query: 293 ctggttcacc 302 ||||||||| Sbjct: 1903 ttggttcacc 1894
>dbj|AB072342.1| Avena sativa mRNA for thionin Asthi5, complete cds Length = 641 Score = 180 bits (91), Expect = 3e-42 Identities = 202/239 (84%) Strand = Plus / Minus Query: 95 gaccttggccatagaaatcatgcacaagaaggcatgattaggcttcaacagactgaatga 154 ||||| ||||| ||||||||||||||||| ||||||||| |||| | ||| |||||| Sbjct: 496 gacctcggccaaagaaatcatgcacaagagtgcatgattaagcttggaaagatggaatga 437 Query: 155 ctgcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttca 214 | ||||| | ||||||||||| ||||| | ||| |||||||| |||||||| ||||| Sbjct: 436 cggcacccttgttacagaaacgaacacattctttgttgcagagtagcatgtcgattttca 377 Query: 215 tctcttggccacggaaaacattgtccatgttgtcacagacagaattcctgcatccaatgg 274 ||||||||||| | | ||||||||||||||||||||| || ||| || ||||||| |||| Sbjct: 376 tctcttggccatgaataacattgtccatgttgtcacaaacggaagtcatgcatcctatgg 317 Query: 275 tgcagtactgagtgacatctggttcaccggattcagggataagattcagtttaggatag 333 ||||||||| ||||||||| ||||||||||||||| | | ||||| |||||||| |||| Sbjct: 316 tgcagtactcagtgacatccggttcaccggattcaagtagaagatgcagtttagaatag 258
>dbj|AB072341.1| Avena sativa mRNA for thionin Asthi4, complete cds Length = 678 Score = 85.7 bits (43), Expect = 1e-13 Identities = 112/135 (82%) Strand = Plus / Minus Query: 93 acgaccttggccatagaaatcatgcacaagaaggcatgattaggcttcaacagactgaat 152 |||||| ||||||||||||| | |||| ||| |||||||||||| | ||||| || | Sbjct: 549 acgaccatggccatagaaataaggcacgagagtgcatgattaggccccgacagatggatt 490 Query: 153 gactgcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaattt 212 ||| ||||| | |||||||||||| ||||||||||| |||||| | |||||||| || Sbjct: 489 gacggcacccttgttacagaaacggacacatgcgttgttgcagacttgcatgtcgatgtt 430 Query: 213 catctcttggccacg 227 ||||||||||||||| Sbjct: 429 catctcttggccacg 415 Score = 58.0 bits (29), Expect = 3e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 241 atgttgtcacagacagaattcctgcatccaatggtgcagtactgagtgacatctggttca 300 ||||||||||| || ||| || |||||||||| |||||||||| || |||||| |||| Sbjct: 386 atgttgtcacaaacggaagtcatgcatccaatagtgcagtactcagctgcatctgcttca 327 Query: 301 ccggattcagggataagattcagtttagg 329 ||| |||||| || ||||| | ||||||| Sbjct: 326 ccgtattcagagagaagatgctgtttagg 298
>gb|AC019028.13| Mus musculus chromosome 5, clone RP23-88A22, complete sequence Length = 264425 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 3 acaagggaaaaagacaaataca 24 |||||||||||||||||||||| Sbjct: 6908 acaagggaaaaagacaaataca 6887
>gb|AC138101.8| Mus musculus chromosome 5, clone RP23-149H20, complete sequence Length = 211521 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 3 acaagggaaaaagacaaataca 24 |||||||||||||||||||||| Sbjct: 86367 acaagggaaaaagacaaataca 86346
>gb|AC125610.4| Homo sapiens 3 BAC RP11-189B7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159706 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 5 aagggaaaaagacaaatacata 26 |||||||||||||||||||||| Sbjct: 85293 aagggaaaaagacaaatacata 85272
>gb|AC013622.12| Mus musculus chromosome 5, clone RP23-232H18, complete sequence Length = 240821 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 3 acaagggaaaaagacaaataca 24 |||||||||||||||||||||| Sbjct: 41781 acaagggaaaaagacaaataca 41802
>emb|AL808121.7| Zebrafish DNA sequence from clone CH211-251B22, complete sequence Length = 154450 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 115 tgcacaagaaggcatgattagg 136 |||||||||||||||||||||| Sbjct: 65514 tgcacaagaaggcatgattagg 65535
>gb|AC125194.4| Mus musculus BAC clone RP23-275K6 from chromosome 18, complete sequence Length = 155706 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 acaagggaaaaagacaaatacataa 27 |||||||||||||| |||||||||| Sbjct: 114727 acaagggaaaaagaaaaatacataa 114751
>emb|AJ439353.1|AGA439353 Anopheles gambiae BAC clone 30E5 Length = 167014 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 ggaaaacattgtccatgttgt 247 ||||||||||||||||||||| Sbjct: 33995 ggaaaacattgtccatgttgt 34015
>gb|AC013437.8| Homo sapiens BAC clone RP11-190J23 from 2, complete sequence Length = 167424 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 240 catgttgtcacagacagaatt 260 ||||||||||||||||||||| Sbjct: 92156 catgttgtcacagacagaatt 92136
>gb|AC150277.2| Mus musculus BAC clone RP23-97E12 from 18, complete sequence Length = 179399 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 acaagggaaaaagacaaatacataa 27 |||||||||||||| |||||||||| Sbjct: 54540 acaagggaaaaagaaaaatacataa 54564
>gb|AC158552.5| Mus musculus chromosome 3, clone RP23-97D22, complete sequence Length = 235709 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 atagaaatcatgcacaagaaggca 128 ||||||||||| |||||||||||| Sbjct: 163342 atagaaatcatacacaagaaggca 163365
>emb|AL592406.4| Human DNA sequence from clone RP11-322F10 on chromosome 1 Contains the 3' end of a histone deacetylase 1 (HDAC1) pseudogene, the 3' end of the MARK1 gene for MAP/microtubule affinity-regulating kinase, a novel gene, a novel gene (FLJ14146) and a CpG island, complete sequence Length = 121601 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 atagtcactagggcattttg 349 |||||||||||||||||||| Sbjct: 119915 atagtcactagggcattttg 119934
>emb|AL359353.11| Human DNA sequence from clone RP11-124J24 on chromosome 1 Contains the 5' end of a novel gene (FLJ20605) and a CpG island, complete sequence Length = 33915 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 atagtcactagggcattttg 349 |||||||||||||||||||| Sbjct: 314 atagtcactagggcattttg 333
>emb|Z11873.1|SSGTFJKG S.salivarius gtfJ and gtfK genes for glucosyltransferase I and glucosyltransferase S Length = 10125 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tacagctgatggtatcaaga 70 |||||||||||||||||||| Sbjct: 2450 tacagctgatggtatcaaga 2469
>gb|AC116341.2| Homo sapiens chromosome 5 clone RP11-144A5, complete sequence Length = 31443 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ggaaaaagacaaatacataa 27 |||||||||||||||||||| Sbjct: 11773 ggaaaaagacaaatacataa 11792
>emb|BX322615.6| Zebrafish DNA sequence from clone DKEY-81L20 in linkage group 17, complete sequence Length = 120315 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 aacagactgaatgactgcac 160 |||||||||||||||||||| Sbjct: 61583 aacagactgaatgactgcac 61602
>gb|AC112183.3| Homo sapiens chromosome 5 clone RP11-152F4, complete sequence Length = 163612 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ggaaaaagacaaatacataa 27 |||||||||||||||||||| Sbjct: 160156 ggaaaaagacaaatacataa 160175
>gb|AC027271.7| Homo sapiens BAC clone RP11-365H22 from 4, complete sequence Length = 177985 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 tttggaccacttatgatttt 365 |||||||||||||||||||| Sbjct: 57050 tttggaccacttatgatttt 57031
>gb|AC124126.14| Mus musculus chromosome 18, clone RP23-377C8, complete sequence Length = 192355 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 acaaatacataagtaagatg 35 |||||||||||||||||||| Sbjct: 111212 acaaatacataagtaagatg 111193
>gb|L25932.1|HUMLBR01 Homo sapiens integral nuclear envelope inner membrane protein (LBR) gene, 5' UTR, exons 1 and 2 Length = 5132 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ggaaaaagacaaatacataa 27 |||||||||||||||||||| Sbjct: 4760 ggaaaaagacaaatacataa 4779
>gb|M64111.1|STRGTFJA Streptococcus salivarius glucosyltransferase I (gtfJ) gene, complete cds, and gtfK gene, 5' end Length = 4941 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tacagctgatggtatcaaga 70 |||||||||||||||||||| Sbjct: 2450 tacagctgatggtatcaaga 2469 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,648,072 Number of Sequences: 3902068 Number of extensions: 3648072 Number of successful extensions: 70137 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70087 Number of HSP's gapped (non-prelim): 46 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)