ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5j18 |
|---|---|
| Clone Library Name | barley_pub |
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 32.3 bits (72), Expect = 0.28 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQG--QGCRQEGAGRRYPQEACRQEGAHQAGDXGXEG 236 QGR+ +G + + S Q QG Q RQ G + + +Q+G HQ G G EG Sbjct: 308 QGRQGQEGGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEG 361 Score = 32.3 bits (72), Expect = 0.28 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQG--QGCRQEGAGRRYPQEACRQEGAHQAGDXGXEG 236 QGR+ +G + + S Q QG Q RQ G + + +Q+G HQ G G EG Sbjct: 285 QGRQGQEGGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEG 338 Score = 31.6 bits (70), Expect = 0.48 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQG--QGCRQEGAGRRYPQEACRQEGAHQAGDXGXEG 236 QGR+ +G + + S Q QG Q RQ G + +Q+G HQ G G EG Sbjct: 216 QGRQGQEGGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGRQGQEG 269 Score = 31.6 bits (70), Expect = 0.48 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQG--QGCRQEGAGRRYPQEACRQEGAHQAGDXGXEG 236 QGR+ +G + + S Q QG Q RQ G + +Q+G HQ G G EG Sbjct: 170 QGRQGQEGGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGRQGQEG 223 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQG--QGCRQEGAGRRYPQEACRQEGAHQAGDXGXEG 236 QGR+ +G + + Q QG Q RQ G + + +Q+G HQ G G EG Sbjct: 193 QGRQGQEGGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEG 246 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQG--QGCRQEGAGRRYPQEACRQEGAHQAGDXGXEG 236 QGR+ +G + + Q QG Q RQ G + + +Q+G HQ G G EG Sbjct: 147 QGRQGQEGGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEG 200 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = -3 Query: 391 QGRRKAQGXXEA--QGSRQAQGQGCRQEGAGRRYPQEACRQEGAHQAGDXGXEG 236 QG+++ QG + QG Q QG Q+G ++ P +Q+G HQ G G EG Sbjct: 105 QGKQQVQGWTKQGQQGGHQQGRQG--QDGGYQQRPPG--QQQGGHQQGRQGQEG 154 Score = 29.6 bits (65), Expect = 1.8 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQG---QGCR-QEGAGRRYPQEACRQEGAHQAGDXGXEG 236 QGR+ +G + + Q QG QG + QEG ++ P +Q+G HQ G G EG Sbjct: 262 QGRQGQEGGYQQRPPGQQQGGHEQGRQGQEGGYQQRPSG--QQQGGHQQGRQGQEG 315 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQG--QGCRQEGAGRRYPQEACRQEGAHQAGDXGXEG 236 QGR+ G + + Q QG Q RQ G + +Q+G HQ G G EG Sbjct: 124 QGRQGQDGGYQQRPPGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGRQGQEG 177
>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor| Length = 839 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQGQGCRQEGAGRRYPQEACRQEGAHQA-GDXGXEGCAGQEAR 215 QG++ Q QG + AQGQ +Q G G++ Q Q+G A G G + GQ + Sbjct: 569 QGQQGQQPAQVQQGQQPAQGQQGQQLGQGQQGQQPGQGQQGQQPAQGQQGQQPGQGQHGQ 628 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQGQGCRQEGAGRRYPQEACRQEG 269 QG++ QG QG + AQGQ +Q G G+ Q Q+G Sbjct: 599 QGQQPGQGQ---QGQQPAQGQQGQQPGQGQHGQQPGQGQQG 636
>GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW212 precursor| Length = 838 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQGQGCRQEGAGRRYPQEACRQEGAH-QAGDXGXEGCAGQE 221 QG++ Q QG + AQGQ +Q G G++ Q Q+ A Q G +G GQ+ Sbjct: 574 QGQQGQQPAQVQQGQQPAQGQQGQQLGQGQQGQQPGQGQQPAQGQQGQQPGQGQQGQQ 631 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Frame = -3 Query: 358 AQGSRQAQGQGCRQEGAGR--RYPQEACRQEGAHQAGDXGXEG 236 AQG + QGQ RQ G G+ YP + Q G Q G +G Sbjct: 188 AQGQQPGQGQQGRQPGQGQPGYYPTSSQLQPGQLQQPAQGQQG 230
>RRBP1_MOUSE (Q99PL5) Ribosome-binding protein 1 (Ribosome receptor protein)| (mRRp) Length = 1605 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 6/69 (8%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQGQGCRQEGA------GRRYPQEACRQEGAHQAGDXGXEGCA 230 QG++ +A+ AQ QG + EGA G +A + EGA G G EG Sbjct: 197 QGKKGQGAQNQAKKGEGAQNQGKKGEGAQNQAKKGEGAQNQAKKGEGAQNQGKKG-EGAQ 255 Query: 229 GQEARXEXG 203 Q + E G Sbjct: 256 NQAKKGEGG 264
>Y1970_CORGL (P54122) Hypothetical UPF0036 protein Cgl1970/cg2160| Length = 718 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/58 (32%), Positives = 26/58 (44%) Frame = -3 Query: 376 AQGXXEAQGSRQAQGQGCRQEGAGRRYPQEACRQEGAHQAGDXGXEGCAGQEARXEXG 203 AQG ++QGS+ AQG R+ G R R+ G + G G A + A G Sbjct: 59 AQGSQDSQGSQNAQGSQNRESGNNNRNRSNNNRRGGRGRRG----SGNANEGANNNSG 112
>HXB1_MOUSE (P17919) Homeobox protein Hox-B1 (Hox-2.9)| Length = 297 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQGQ-GCRQEGAGRRYPQEAC 281 Q RR Q E +G R G GC +E AG Q AC Sbjct: 248 QNRRMKQKKREREGGRMPAGPPGCPKEAAGDASDQSAC 285
>CRU2_BRANA (P33524) Cruciferin BnC2 precursor (11S globulin) (12S storage| protein) [Contains: Cruciferin BnC2 alpha subunit; Cruciferin BnC2 beta subunit] Length = 496 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3 Query: 388 GRRKAQGXXEAQGSRQAQGQGCRQEGAGRRYPQEACRQEGAHQ 260 G + QG + QG Q QGQG Q+G G+ ++ Q+G Q Sbjct: 125 GEGQGQGQ-QGQGQGQGQGQGKGQQGQGKGQQGQSQGQQGQGQ 166
>NFM_MOUSE (P08553) Neurofilament triplet M protein (160 kDa neurofilament| protein) (Neurofilament medium polypeptide) (NF-M) Length = 848 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQGQGCRQEGAGRRYPQEACRQEGAHQAGDXGXEGCAGQEARX 212 +G+ + + E S QA+ G +EG+ + E +EG +A G E A +E + Sbjct: 523 EGQEEEEEEDEGVKSDQAEEGGSEKEGSSEKDEGEQEEEEGETEAEGEGEEAEAKEEKKI 582 Query: 211 E 209 E Sbjct: 583 E 583
>SPIKE_CVPRT (Q01977) Spike glycoprotein precursor (Peplomer protein) (E2)| Length = 1447 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = -1 Query: 180 WICLAVGVSFH*WNFMFCACQSRCLGCXFGVWVVVCALCERRK 52 W+ + + V F +FC C + C GC + ++C RR+ Sbjct: 1392 WLLIGLVVIFCIPLLLFCCCSTGCCGCIGCLGSCCHSICSRRQ 1434
>SPIKE_CVPPU (P07946) Spike glycoprotein precursor (Peplomer protein) (E2)| Length = 1447 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = -1 Query: 180 WICLAVGVSFH*WNFMFCACQSRCLGCXFGVWVVVCALCERRK 52 W+ + + V F +FC C + C GC + ++C RR+ Sbjct: 1392 WLLIGLVVIFCIPLLLFCCCSTGCCGCIGCLGSCCHSICSRRQ 1434
>RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5038 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = -3 Query: 388 GRRKAQGXXEAQGSRQAQGQGCRQEGAGRRYPQEACRQEGAHQAGDXGXEG 236 G + A +A G ++G G EGAG +E H+AG G +G Sbjct: 4393 GEQPAGPGGDADGEGASEGAGDAAEGAGDE-------EEAVHEAGPGGADG 4436
>SPIKE_CVPMI (P33470) Spike glycoprotein precursor (Peplomer protein) (E2)| Length = 1449 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = -1 Query: 180 WICLAVGVSFH*WNFMFCACQSRCLGCXFGVWVVVCALCERRK 52 W+ + + V F +FC C + C GC + ++C RR+ Sbjct: 1394 WLLIGLVVIFCIPLLLFCCCSTGCCGCIGCLGSCCHSICSRRQ 1436
>SPIKE_CVPFS (P18450) Spike glycoprotein precursor (Peplomer protein) (E2)| Length = 1449 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = -1 Query: 180 WICLAVGVSFH*WNFMFCACQSRCLGCXFGVWVVVCALCERRK 52 W+ + + V F +FC C + C GC + ++C RR+ Sbjct: 1394 WLLIGLVVIFCIPLLLFCCCSTGCCGCIGCLGSCCHSICSRRQ 1436
>SPIKE_CVCAE (Q65984) Spike glycoprotein precursor (Peplomer protein) (E2)| Length = 1453 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = -1 Query: 180 WICLAVGVSFH*WNFMFCACQSRCLGCXFGVWVVVCALCERRK 52 W+ + + V F +FC C + C GC + ++C RR+ Sbjct: 1398 WLLIGLVVIFCIPILLFCCCSTGCCGCIGCLGSCCHSICSRRQ 1440
>CSP_PLAKH (P02894) Circumsporozoite protein precursor (CS)| Length = 363 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = -3 Query: 388 GRRKAQGXXEAQGSRQAQGQGC-----RQEGAGRRYPQEACRQEGAHQAGDXGXEGCAGQ 224 G+ +AQG G QAQG G + +G G P++ GA G+ G + Sbjct: 208 GQPQAQGDGANAGQPQAQGDGANAGQPQAQGDGANVPRQGRNGGGAPAGGNEGNKQAGKG 267 Query: 223 EARXEXG 203 + + G Sbjct: 268 QGQNNQG 274 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 8/70 (11%) Frame = -3 Query: 388 GRRKAQGXXEAQGSRQAQGQGC-----RQEGAGRRYPQEACRQEGAH---QAGDXGXEGC 233 G+ +AQG G QAQG G + +G G Q + +GA+ Q + G Sbjct: 196 GQPQAQGDGANAGQPQAQGDGANAGQPQAQGDGANAGQPQAQGDGANVPRQGRNGGGAPA 255 Query: 232 AGQEARXEXG 203 G E + G Sbjct: 256 GGNEGNKQAG 265
>RNS2_ARATH (P42814) Ribonuclease 2 precursor (EC 3.1.27.1)| Length = 259 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = -2 Query: 80 WYAPFVRGGRSCCSRNLC 27 W + RG R CCS+N C Sbjct: 41 WPGTYCRGTRHCCSKNAC 58
>RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 690 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/59 (28%), Positives = 24/59 (40%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQGQGCRQEGAGRRYPQEACRQEGAHQAGDXGXEGCAGQEAR 215 Q R+++G A QGQ R +GA +A R+ D G E G+ R Sbjct: 153 QSERRSRGRRRAGDDDAQQGQDRRSDGAQGEDGADADRRGDREDRDDNGRENGRGRNGR 211
>GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10 precursor| Length = 648 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQGQGCRQEGAGRRYPQEACRQEGA 266 QG++ QG QG + QGQ QE G P ++ A Sbjct: 576 QGQQSGQGQQSGQGHQPGQGQQSGQEQQGYDSPYHVSAEQQA 617
>ACRBP_PIG (Q29016) Acrosin-binding protein precursor (Proacrosin-binding| protein sp32) (Fragment) Length = 537 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/61 (27%), Positives = 26/61 (42%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQGQGCRQEGAGRRYPQEACRQEGAHQAGDXGXEGCAGQEARX 212 QG+ Q + QG Q +G QE +E ++EG Q + E +G +A Sbjct: 189 QGQEHKQEHKQEQGQEHKQDEGQEQEEQEEEQEEEGKQEEG--QGTEESLEAMSGLQADS 246 Query: 211 E 209 E Sbjct: 247 E 247
>GLT3_WHEAT (P08488) Glutenin, high molecular weight subunit 12 precursor| Length = 660 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = -3 Query: 391 QGRRKAQGXXEAQGSRQAQGQGCRQEGAGRRYPQEACRQEGA 266 QG++ QG QG + QGQ QE G P ++ A Sbjct: 588 QGQQSGQGQQSGQGHQPGQGQQSGQEKQGYDSPYHVSAEQQA 629
>NAPH_ECOLI (P33934) Ferredoxin-type protein napH| Length = 287 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = -3 Query: 232 AGQEARXEXGXXVXA*WMDLPSGWR*FPLVEFYVLCLSVKMPWLXIWCLGG 80 AG+EA + G W+ L L +F+VL + + PW +W L G Sbjct: 8 AGREALEKKGWWRSHRWLVLRR------LCQFFVLGMFLSGPWFGVWILHG 52
>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor| Length = 4007 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/46 (28%), Positives = 22/46 (47%) Frame = -1 Query: 198 KXRPDGWICLAVGVSFH*WNFMFCACQSRCLGCXFGVWVVVCALCE 61 K +GW + G+ F+ + ACQ +C C G + C+ C+ Sbjct: 443 KLLQNGWCVHSCGLGFYQAGSLCLACQPQCSTCTSG---LECSSCQ 485 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,396,756 Number of Sequences: 219361 Number of extensions: 563951 Number of successful extensions: 1614 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1485 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1592 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
