| Clone Name | rbags5j16 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | RS6A_ARATH (O48549) 40S ribosomal protein S6-1 | 42 | 6e-04 | 2 | RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6 | 39 | 0.004 | 3 | RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment) | 38 | 0.007 | 4 | RS6B_ARATH (P51430) 40S ribosomal protein S6-2 | 38 | 0.009 | 5 | MA2A2_HUMAN (P49641) Alpha-mannosidase IIx (EC 3.2.1.114) (Manno... | 28 | 7.0 |
|---|
>RS6A_ARATH (O48549) 40S ribosomal protein S6-1| Length = 250 Score = 41.6 bits (96), Expect = 6e-04 Identities = 20/33 (60%), Positives = 25/33 (75%) Frame = -3 Query: 124 AXXLKXHRDRRSESMAKRRSKLSAATKAPXVSA 26 A LK RDRRSES+AK+RS+LS+A P V+A Sbjct: 218 ASRLKEQRDRRSESLAKKRSRLSSAAAKPSVTA 250
>RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6| Length = 251 Score = 38.9 bits (89), Expect = 0.004 Identities = 22/34 (64%), Positives = 25/34 (73%), Gaps = 1/34 (2%) Frame = -3 Query: 124 AXXLKXHRDRRSESMAKRRSKLS-AATKAPXVSA 26 A LK RDRRSES+AK+RS+LS AA K VSA Sbjct: 218 ASRLKEQRDRRSESLAKKRSRLSAAAAKTASVSA 251
>RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment)| Length = 199 Score = 38.1 bits (87), Expect = 0.007 Identities = 19/33 (57%), Positives = 27/33 (81%) Frame = -3 Query: 124 AXXLKXHRDRRSESMAKRRSKLSAATKAPXVSA 26 A LK R++RSES+AK+RS+LSAA+K P ++A Sbjct: 168 ASRLKEQREKRSESLAKKRSRLSAASK-PSIAA 199
>RS6B_ARATH (P51430) 40S ribosomal protein S6-2| Length = 249 Score = 37.7 bits (86), Expect = 0.009 Identities = 18/29 (62%), Positives = 22/29 (75%) Frame = -3 Query: 124 AXXLKXHRDRRSESMAKRRSKLSAATKAP 38 A LK RDRRSES+AK+RS+LS+A P Sbjct: 218 ASRLKEQRDRRSESLAKKRSRLSSAPAKP 246
>MA2A2_HUMAN (P49641) Alpha-mannosidase IIx (EC 3.2.1.114)| (Mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase) (MAN IIx) (Mannosidase alpha class 2A member 2) Length = 1139 Score = 28.1 bits (61), Expect = 7.0 Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%) Frame = +1 Query: 43 PWWQQ-TASTSSWPCS 87 PWW T ST SWPC+ Sbjct: 872 PWWTSGTTSTRSWPCT 887 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.127 0.477 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,387,014 Number of Sequences: 219361 Number of extensions: 96856 Number of successful extensions: 378 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 375 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 378 length of database: 80,573,946 effective HSP length: 22 effective length of database: 75,748,004 effective search space used: 1817952096 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)