ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5j16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RS6A_ARATH (O48549) 40S ribosomal protein S6-1 42 6e-04
2RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6 39 0.004
3RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment) 38 0.007
4RS6B_ARATH (P51430) 40S ribosomal protein S6-2 38 0.009
5MA2A2_HUMAN (P49641) Alpha-mannosidase IIx (EC 3.2.1.114) (Manno... 28 7.0

>RS6A_ARATH (O48549) 40S ribosomal protein S6-1|
          Length = 250

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = -3

Query: 124 AXXLKXHRDRRSESMAKRRSKLSAATKAPXVSA 26
           A  LK  RDRRSES+AK+RS+LS+A   P V+A
Sbjct: 218 ASRLKEQRDRRSESLAKKRSRLSSAAAKPSVTA 250



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>RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6|
          Length = 251

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 22/34 (64%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
 Frame = -3

Query: 124 AXXLKXHRDRRSESMAKRRSKLS-AATKAPXVSA 26
           A  LK  RDRRSES+AK+RS+LS AA K   VSA
Sbjct: 218 ASRLKEQRDRRSESLAKKRSRLSAAAAKTASVSA 251



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>RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment)|
          Length = 199

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = -3

Query: 124 AXXLKXHRDRRSESMAKRRSKLSAATKAPXVSA 26
           A  LK  R++RSES+AK+RS+LSAA+K P ++A
Sbjct: 168 ASRLKEQREKRSESLAKKRSRLSAASK-PSIAA 199



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>RS6B_ARATH (P51430) 40S ribosomal protein S6-2|
          Length = 249

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = -3

Query: 124 AXXLKXHRDRRSESMAKRRSKLSAATKAP 38
           A  LK  RDRRSES+AK+RS+LS+A   P
Sbjct: 218 ASRLKEQRDRRSESLAKKRSRLSSAPAKP 246



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>MA2A2_HUMAN (P49641) Alpha-mannosidase IIx (EC 3.2.1.114)|
           (Mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase)
           (MAN IIx) (Mannosidase alpha class 2A member 2)
          Length = 1139

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
 Frame = +1

Query: 43  PWWQQ-TASTSSWPCS 87
           PWW   T ST SWPC+
Sbjct: 872 PWWTSGTTSTRSWPCT 887


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.127    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,387,014
Number of Sequences: 219361
Number of extensions: 96856
Number of successful extensions: 378
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 80,573,946
effective HSP length: 22
effective length of database: 75,748,004
effective search space used: 1817952096
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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