ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5j14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_192705.1| Oryza sativa (japonica cultivar-group), predic... 44 0.35
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
3dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
4dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
5dbj|AK109289.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.35
6gb|AC122871.4| Mus musculus BAC clone RP23-107P12 from 5, comple... 44 0.35
7ref|XM_456080.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F22385g ... 40 5.4
8gb|AY809981.1| Schistosoma japonicum SJCHGC05390 protein mRNA, p... 40 5.4
9emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 5.4
10emb|AL390997.10| Human DNA sequence from clone RP11-159G6 on chr... 40 5.4
11emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 5.4
12emb|BX538353.1| Cryptosporidium parvum chromosome 6, complete se... 40 5.4
13gb|M85206.1|APLNADASEA Aplysia californica NAD glycohydrolase (N... 40 5.4
14emb|CR786571.6| Zebrafish DNA sequence from clone DKEY-234L24 in... 40 5.4
15gb|AY110978.1| Zea mays CL7313_1 mRNA sequence 40 5.4

>ref|NM_192705.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2301

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 292  accttcttagcatataccttgaaaagcttgtcaaatttctnatcc 336
            ||||||||||||||| || | ||||||||| |||| |||| ||||
Sbjct: 2177 accttcttagcatatgccctaaaaagcttgccaaacttctcatcc 2133



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 292      accttcttagcatataccttgaaaagcttgtcaaatttctnatcc 336
                ||||||||||||||| || | ||||||||| |||| |||| ||||
Sbjct: 23932851 accttcttagcatatgccctaaaaagcttgccaaacttctcatcc 23932807



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>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0704D04
          Length = 147638

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 292   accttcttagcatataccttgaaaagcttgtcaaatttctnatcc 336
             ||||||||||||||| || | ||||||||| |||| |||| ||||
Sbjct: 79255 accttcttagcatatgccctaaaaagcttgccaaacttctcatcc 79211



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>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0090K04
          Length = 152556

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 292   accttcttagcatataccttgaaaagcttgtcaaatttctnatcc 336
             ||||||||||||||| || | ||||||||| |||| |||| ||||
Sbjct: 47373 accttcttagcatatgccctaaaaagcttgccaaacttctcatcc 47329



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>dbj|AK109289.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C07, full
           insert sequence
          Length = 1254

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 292 accttcttagcatataccttgaaaagcttgtcaaatttctnatcc 336
           ||||||||||||||| || | ||||||||| |||| |||| ||||
Sbjct: 785 accttcttagcatatgccctaaaaagcttgccaaacttctcatcc 741



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>gb|AC122871.4| Mus musculus BAC clone RP23-107P12 from 5, complete sequence
          Length = 213939

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 80    aagaaatcaggtcaacctgcaa 101
             ||||||||||||||||||||||
Sbjct: 63791 aagaaatcaggtcaacctgcaa 63770



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>ref|XM_456080.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F22385g predicted mRNA
          Length = 4362

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 258  gaatatgaaaatcagatcag 277
            ||||||||||||||||||||
Sbjct: 2043 gaatatgaaaatcagatcag 2024



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>gb|AY809981.1| Schistosoma japonicum SJCHGC05390 protein mRNA, partial cds
          Length = 486

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 214 tcaaggtcctggagtgtactagcc 237
           ||||||||||||||||| ||||||
Sbjct: 356 tcaaggtcctggagtgtcctagcc 379



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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 181     cggcgcacctcaatcatatcaccg 204
               ||||||||||||||||| ||||||
Sbjct: 1729435 cggcgcacctcaatcatctcaccg 1729458



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>emb|AL390997.10| Human DNA sequence from clone RP11-159G6 on chromosome Xq21.33-23,
             complete sequence
          Length = 112328

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   atcagatgggctgagttgga 292
             ||||||||||||||||||||
Sbjct: 42293 atcagatgggctgagttgga 42312



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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 258     gaatatgaaaatcagatcag 277
               ||||||||||||||||||||
Sbjct: 2093277 gaatatgaaaatcagatcag 2093258



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>emb|BX538353.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 4/4
          Length = 277703

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 308   ccttgaaaagcttgtcaaatttct 331
             |||||||||||||| |||||||||
Sbjct: 60892 ccttgaaaagcttggcaaatttct 60869



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>gb|M85206.1|APLNADASEA Aplysia californica NAD glycohydrolase (NADase) mRNA, complete cds
          Length = 1191

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 307 accttgaaaagcttgtcaaa 326
           ||||||||||||||||||||
Sbjct: 719 accttgaaaagcttgtcaaa 738



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>emb|CR786571.6| Zebrafish DNA sequence from clone DKEY-234L24 in linkage group 4,
              complete sequence
          Length = 182259

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 367    ttttcctgaaacattatgca 386
              ||||||||||||||||||||
Sbjct: 112839 ttttcctgaaacattatgca 112858



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>gb|AY110978.1| Zea mays CL7313_1 mRNA sequence
          Length = 1148

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 40/47 (85%)
 Strand = Plus / Minus

                                                          
Query: 178 ttacggcgcacctcaatcatatcaccgntctccagctcaaggtcctg 224
           ||||| |||||||||||||| ||  ||  |||||| |||||||||||
Sbjct: 495 ttacgacgcacctcaatcatgtcttcgtcctccagatcaaggtcctg 449


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,846,008
Number of Sequences: 3902068
Number of extensions: 2846008
Number of successful extensions: 45553
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45510
Number of HSP's gapped (non-prelim): 43
length of query: 403
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 381
effective length of database: 17,147,199,772
effective search space: 6533083113132
effective search space used: 6533083113132
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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