| Clone Name | rbags5j14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192705.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2301 Score = 44.1 bits (22), Expect = 0.35 Identities = 39/45 (86%) Strand = Plus / Minus Query: 292 accttcttagcatataccttgaaaagcttgtcaaatttctnatcc 336 ||||||||||||||| || | ||||||||| |||| |||| |||| Sbjct: 2177 accttcttagcatatgccctaaaaagcttgccaaacttctcatcc 2133
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.35 Identities = 39/45 (86%) Strand = Plus / Minus Query: 292 accttcttagcatataccttgaaaagcttgtcaaatttctnatcc 336 ||||||||||||||| || | ||||||||| |||| |||| |||| Sbjct: 23932851 accttcttagcatatgccctaaaaagcttgccaaacttctcatcc 23932807
>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0704D04 Length = 147638 Score = 44.1 bits (22), Expect = 0.35 Identities = 39/45 (86%) Strand = Plus / Minus Query: 292 accttcttagcatataccttgaaaagcttgtcaaatttctnatcc 336 ||||||||||||||| || | ||||||||| |||| |||| |||| Sbjct: 79255 accttcttagcatatgccctaaaaagcttgccaaacttctcatcc 79211
>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0090K04 Length = 152556 Score = 44.1 bits (22), Expect = 0.35 Identities = 39/45 (86%) Strand = Plus / Minus Query: 292 accttcttagcatataccttgaaaagcttgtcaaatttctnatcc 336 ||||||||||||||| || | ||||||||| |||| |||| |||| Sbjct: 47373 accttcttagcatatgccctaaaaagcttgccaaacttctcatcc 47329
>dbj|AK109289.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C07, full insert sequence Length = 1254 Score = 44.1 bits (22), Expect = 0.35 Identities = 39/45 (86%) Strand = Plus / Minus Query: 292 accttcttagcatataccttgaaaagcttgtcaaatttctnatcc 336 ||||||||||||||| || | ||||||||| |||| |||| |||| Sbjct: 785 accttcttagcatatgccctaaaaagcttgccaaacttctcatcc 741
>gb|AC122871.4| Mus musculus BAC clone RP23-107P12 from 5, complete sequence Length = 213939 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 80 aagaaatcaggtcaacctgcaa 101 |||||||||||||||||||||| Sbjct: 63791 aagaaatcaggtcaacctgcaa 63770
>ref|XM_456080.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F22385g predicted mRNA Length = 4362 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gaatatgaaaatcagatcag 277 |||||||||||||||||||| Sbjct: 2043 gaatatgaaaatcagatcag 2024
>gb|AY809981.1| Schistosoma japonicum SJCHGC05390 protein mRNA, partial cds Length = 486 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 214 tcaaggtcctggagtgtactagcc 237 ||||||||||||||||| |||||| Sbjct: 356 tcaaggtcctggagtgtcctagcc 379
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 cggcgcacctcaatcatatcaccg 204 ||||||||||||||||| |||||| Sbjct: 1729435 cggcgcacctcaatcatctcaccg 1729458
>emb|AL390997.10| Human DNA sequence from clone RP11-159G6 on chromosome Xq21.33-23, complete sequence Length = 112328 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 atcagatgggctgagttgga 292 |||||||||||||||||||| Sbjct: 42293 atcagatgggctgagttgga 42312
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gaatatgaaaatcagatcag 277 |||||||||||||||||||| Sbjct: 2093277 gaatatgaaaatcagatcag 2093258
>emb|BX538353.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 4/4 Length = 277703 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 ccttgaaaagcttgtcaaatttct 331 |||||||||||||| ||||||||| Sbjct: 60892 ccttgaaaagcttggcaaatttct 60869
>gb|M85206.1|APLNADASEA Aplysia californica NAD glycohydrolase (NADase) mRNA, complete cds Length = 1191 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 accttgaaaagcttgtcaaa 326 |||||||||||||||||||| Sbjct: 719 accttgaaaagcttgtcaaa 738
>emb|CR786571.6| Zebrafish DNA sequence from clone DKEY-234L24 in linkage group 4, complete sequence Length = 182259 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ttttcctgaaacattatgca 386 |||||||||||||||||||| Sbjct: 112839 ttttcctgaaacattatgca 112858
>gb|AY110978.1| Zea mays CL7313_1 mRNA sequence Length = 1148 Score = 40.1 bits (20), Expect = 5.4 Identities = 40/47 (85%) Strand = Plus / Minus Query: 178 ttacggcgcacctcaatcatatcaccgntctccagctcaaggtcctg 224 ||||| |||||||||||||| || || |||||| ||||||||||| Sbjct: 495 ttacgacgcacctcaatcatgtcttcgtcctccagatcaaggtcctg 449 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,846,008 Number of Sequences: 3902068 Number of extensions: 2846008 Number of successful extensions: 45553 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45510 Number of HSP's gapped (non-prelim): 43 length of query: 403 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 381 effective length of database: 17,147,199,772 effective search space: 6533083113132 effective search space used: 6533083113132 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)