>T2PS_PROST (P00640) Type II restriction enzyme PstI (EC 3.1.21.4)|
           (Endonuclease PstI) (R.PstI)
          Length = 326

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = -1

Query: 400 FISQLFSSEGAATPLSPRKWIKIRAALKLASVGRL 296
           F+ +  +S G   P+SP++W+++ AAL   +VG++
Sbjct: 243 FLIEAVTSHG---PISPKRWLELEAALSSCTVGKV 274

>DXR_SALTI (Q8Z9A6) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 398

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 170 LDVVHHDMDEVYNLII*LVKNSSTAAEQCVE 78
           LDVVHH+ D    + +   KN +  AEQC+E
Sbjct: 18  LDVVHHNPDSFRVIALVAGKNVARMAEQCLE 48

>VCAP_PRVIS (Q00705) Major capsid protein (MCP) (MCP142)|
          Length = 1330

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 140 LHPYHDVQHQDGSLIHTLFCHNCYPHYSAGSCC 238
           LHP+HD +    S++  ++ +   P +S G+CC
Sbjct: 771 LHPHHDAEW---SVLSKIYYYAVVPAFSRGNCC 800

>PTN6_HUMAN (P29350) Tyrosine-protein phosphatase non-receptor type 6 (EC|
           3.1.3.48) (Protein-tyrosine phosphatase 1C) (PTP-1C)
           (Hematopoietic cell protein-tyrosine phosphatase)
           (SH-PTP1) (Protein-tyrosine phosphatase SHP-1)
          Length = 595

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 116 LTILLDYILHPYHDVQHQDGSLIHTLFCHNCYPHYSAGSCCWYQPCPSRGTMQTPSRGPG 295
           LT L++Y       +Q +DG++IH  +  NC    S     WY    S G  +T  +  G
Sbjct: 72  LTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSER---WYHGHMSGGQAETLLQAKG 128

Query: 296 E 298
           E
Sbjct: 129 E 129

>NOTC1_BRARE (P46530) Neurogenic locus notch homolog protein 1 precursor|
          Length = 2437

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 15/68 (22%)
 Frame = +2

Query: 206  CYPHYSAGSC------CWYQPCPSRGTM------QTPSRGPGESPYRC*LQ---CCPDLD 340
            C P Y   +C      C  QPC + GT          S   G     C +    C P +D
Sbjct: 1169 CVPGYHGMNCSKEINECLSQPCQNGGTCIDLVNTYKCSCPRGTQGVHCEIDIDDCSPSVD 1228

Query: 341  PLTWRQRC 364
            PLT   RC
Sbjct: 1229 PLTGEPRC 1236

>ADCY5_RABIT (P40144) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase|
           type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5)
          Length = 1264

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 24/73 (32%), Positives = 37/73 (50%)
 Frame = +1

Query: 1   YLYICC*QITIQAPHIVLLLTD*NTSSTHCSAAVLLFLTNYIIRLYTSSIS*CTTSRWIL 180
           +L+ICC QITI  PH + +L      S + +  +LL L  ++  +Y S +         L
Sbjct: 775 FLFICCVQITI-VPHSMFML------SFYLACFLLLTLVVFVSMIY-SCVKLFPRPLQSL 826

Query: 181 DPHIVLSQLLSTL 219
              IV S++ STL
Sbjct: 827 SRKIVRSKMNSTL 839

>ARG56_SCHPO (P31318) Protein arg11, mitochondrial precursor [Contains:|
           N-acetyl-gamma-glutamyl-phosphate reductase (EC
           1.2.1.38) (N-acetyl-glutamate semialdehyde
           dehydrogenase) (NAGSA dehydrogenase); Acetylglutamate
           kinase (EC 2.7.2.8) (NAG kinase) (AGK)
          Length = 885

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 222 QQGHVVGTSLALPGGLCRPLLEALESRPTDASFNAALILIHLRGD 356
           ++G V    +ALP G+C+P ++AL       S N   +++ L  D
Sbjct: 634 EEGAVDAWVMALPNGVCKPYVDAL------TSANGKSVIVDLSAD 672

>RFC5_SCHPO (O94697) Probable activator 1 subunit 5 (Replication factor C|
           subunit 5) (Replication factor C5)
          Length = 358

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 230 TLLNSVDNNCDRTMCGSRIHLDVVH 156
           +LLN++ NNCDR +  + + L+ VH
Sbjct: 209 SLLNNIANNCDRNLRKAILLLETVH 233

>PETD_PROMM (Q7TUQ1) Cytochrome b6-f complex subunit 4 (17 kDa polypeptide)|
          Length = 160

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +1

Query: 184 PHIVLSQLLSTLFSRVMLLVPALPFPGDYADPFSRPWRVALQMLASMLP*S*STYVATKV 363
           P+ +L   L TL    ++L+P +     Y +PF RP  +A  +  +++    + Y+    
Sbjct: 92  PNKLLGIALQTLVPLGLMLIPFIESVNKYQNPFRRPIAMAFFLFGTVI----TIYLGIGA 147

Query: 364 SLPL 375
            LP+
Sbjct: 148 CLPI 151


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,539,825
Number of Sequences: 219361
Number of extensions: 1142768
Number of successful extensions: 3076
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3075
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)