| Clone Name | rbags5i20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 280 ttctcgaggccctggagagtcgccctacagatgctagcttcaatgctgccctgatcttga 339 |||||||||| |||||||| | || |||||||| ||||||| |||||||||||||||| Sbjct: 22167421 ttctcgaggctctggagagcctacccacagatgccagcttcagcgctgccctgatcttga 22167480 Query: 340 tccacttacgtggcgacaaaggtgtcgctgccccttcactgctaaaaagctgagaaatga 399 |||||| ||||| ||||| || ||| | | ||| ||||| ||| ||||||||||| Sbjct: 22167481 cccacttgcgtggggacaatggcaccgcaactctttcgttgctagaaaactgagaaatga 22167540 Query: 400 agctttgtatgagctgatca 419 | | ||||||||||||||| Sbjct: 22167541 aattctgtatgagctgatca 22167560
>dbj|AK067865.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124K14, full insert sequence Length = 2169 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 280 ttctcgaggccctggagagtcgccctacagatgctagcttcaatgctgccctgatcttga 339 |||||||||| |||||||| | || |||||||| ||||||| |||||||||||||||| Sbjct: 1833 ttctcgaggctctggagagcctacccacagatgccagcttcagcgctgccctgatcttga 1774 Query: 340 tccacttacgtggcgacaaaggtgtcgctgccccttcactgctaaaaagctgagaaatga 399 |||||| ||||| ||||| || ||| | | ||| ||||| ||| ||||||||||| Sbjct: 1773 cccacttgcgtggggacaatggcaccgcaactctttcgttgctagaaaactgagaaatga 1714 Query: 400 agctttgtatgagctgatca 419 | | ||||||||||||||| Sbjct: 1713 aattctgtatgagctgatca 1694
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 280 ttctcgaggccctggagagtcgccctacagatgctagcttcaatgctgccctgatcttga 339 |||||||||| |||||||| | || |||||||| ||||||| |||||||||||||||| Sbjct: 22095766 ttctcgaggctctggagagcctacccacagatgccagcttcagcgctgccctgatcttga 22095825 Query: 340 tccacttacgtggcgacaaaggtgtcgctgccccttcactgctaaaaagctgagaaatga 399 |||||| ||||| ||||| || ||| | | ||| ||||| ||| ||||||||||| Sbjct: 22095826 cccacttgcgtggggacaatggcaccgcaactctttcgttgctagaaaactgagaaatga 22095885 Query: 400 agctttgtatgagctgatca 419 | | ||||||||||||||| Sbjct: 22095886 aattctgtatgagctgatca 22095905
>emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC OJ1123_B09 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155585 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 280 ttctcgaggccctggagagtcgccctacagatgctagcttcaatgctgccctgatcttga 339 |||||||||| |||||||| | || |||||||| ||||||| |||||||||||||||| Sbjct: 85589 ttctcgaggctctggagagcctacccacagatgccagcttcagcgctgccctgatcttga 85530 Query: 340 tccacttacgtggcgacaaaggtgtcgctgccccttcactgctaaaaagctgagaaatga 399 |||||| ||||| ||||| || ||| | | ||| ||||| ||| ||||||||||| Sbjct: 85529 cccacttgcgtggggacaatggcaccgcaactctttcgttgctagaaaactgagaaatga 85470 Query: 400 agctttgtatgagctgatca 419 | | ||||||||||||||| Sbjct: 85469 aattctgtatgagctgatca 85450
>gb|AC139211.13| Mus musculus chromosome 6, clone RP23-302O24, complete sequence Length = 154129 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 100 gtactgctatttttaactaact 121 |||||||||||||||||||||| Sbjct: 147838 gtactgctatttttaactaact 147859
>gb|AC158683.2| Mus musculus 6 BAC RP23-328P16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 203488 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 100 gtactgctatttttaactaact 121 |||||||||||||||||||||| Sbjct: 144638 gtactgctatttttaactaact 144617
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 350 tggcgacaaaggtgtcgctgcc 371 |||||||||||||||||||||| Sbjct: 1642451 tggcgacaaaggtgtcgctgcc 1642472
>gb|AC139941.9| Mus musculus chromosome 13, clone RP23-78M22, complete sequence Length = 236536 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 tactgctatttttaactaact 121 ||||||||||||||||||||| Sbjct: 151714 tactgctatttttaactaact 151694
>gb|AF442300.1| Kluyveromyces delphensis small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 594 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 107 tatttttaactaactatattattagattatata 139 ||||| ||| ||| ||||||||||||||||||| Sbjct: 65 tatttataattaaatatattattagattatata 33
>gb|AC026774.7| Homo sapiens chromosome 5 clone CTC-235G5, complete sequence Length = 108451 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 390 tgagaaatgaagctttgtatg 410 ||||||||||||||||||||| Sbjct: 89575 tgagaaatgaagctttgtatg 89595
>gb|AC120113.2| Homo sapiens chromosome 5 clone CTD-2324F19, complete sequence Length = 129346 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 tgagaaatgaagctttgtatg 410 ||||||||||||||||||||| Sbjct: 127250 tgagaaatgaagctttgtatg 127230
>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence Length = 339089 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 386 aagctgagaaatgaagctttg 406 ||||||||||||||||||||| Sbjct: 39822 aagctgagaaatgaagctttg 39802
>gb|AC105072.9| Mus musculus chromosome 5, clone RP24-167C6, complete sequence Length = 173710 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 376 cactgctaaaaagctgagaaatgaa 400 |||| |||||||||||||||||||| Sbjct: 136065 cacttctaaaaagctgagaaatgaa 136041
>gb|AC134463.3| Mus musculus BAC clone RP23-425N12 from 5, complete sequence Length = 200629 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 376 cactgctaaaaagctgagaaatgaa 400 |||| |||||||||||||||||||| Sbjct: 89236 cacttctaaaaagctgagaaatgaa 89212
>ref|XM_656095.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3583.2), mRNA Length = 2460 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 ggcgacaaaggtgtcgctgc 370 |||||||||||||||||||| Sbjct: 1522 ggcgacaaaggtgtcgctgc 1541
>gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome Length = 490885 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 aactaactatattattagattata 137 ||||||||||||||||| |||||| Sbjct: 11008 aactaactatattattaaattata 10985
>gb|AC125057.5| Mus musculus BAC clone RP23-399K1 from chromosome 12, complete sequence Length = 182276 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 cacactattcagcagggtcatgtt 236 |||| ||||||||||||||||||| Sbjct: 18743 cacaatattcagcagggtcatgtt 18766
>gb|AC123869.4| Mus musculus BAC clone RP23-245M16 from 12, complete sequence Length = 167795 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 cacactattcagcagggtcatgtt 236 |||| ||||||||||||||||||| Sbjct: 20937 cacaatattcagcagggtcatgtt 20914
>emb|AL591502.10| Human DNA sequence from clone RP11-199C17 on chromosome 9 Contains the 5' end of the TBC1D2 gene for TBC1 domain family, member 2 (PARIS1, PARIS-1,DKFZP761D1823, DKFZp761D1823), the 3' end of the GPR51 gene for G protein-coupled receptor 51 (HG20, GABBR2, GPRC3B, GABABR2) and a CpG island, complete sequence Length = 156753 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 gtaccagccttgcccttccc 260 |||||||||||||||||||| Sbjct: 13872 gtaccagccttgcccttccc 13891
>emb|BX572083.6| Zebrafish DNA sequence from clone DKEY-232J4 in linkage group 13, complete sequence Length = 99030 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ctgttgctaacaaatcacaa 31 |||||||||||||||||||| Sbjct: 98774 ctgttgctaacaaatcacaa 98793
>gb|AF291662.1| Aspergillus nidulans Kex2-like dibasic endoprotease ANPC gene, complete cds Length = 4688 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 ggcgacaaaggtgtcgctgc 370 |||||||||||||||||||| Sbjct: 2268 ggcgacaaaggtgtcgctgc 2287
>gb|AC096763.2| Homo sapiens BAC clone RP11-625A6 from 4, complete sequence Length = 168710 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 taactatattattagattatatac 140 |||||||||||| ||||||||||| Sbjct: 49772 taactatattatgagattatatac 49749
>gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome Length = 1471282 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 aagctttgtatgagctgatc 418 |||||||||||||||||||| Sbjct: 306895 aagctttgtatgagctgatc 306876
>gb|AC102443.11| Mus musculus chromosome 3, clone RP24-191D1, complete sequence Length = 147088 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 aaaagctgagaaatgaagct 403 |||||||||||||||||||| Sbjct: 62951 aaaagctgagaaatgaagct 62970
>gb|AF250284.1|AF250284 Amsacta moorei entomopoxvirus, complete genome Length = 232392 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 tatattattagattatatac 140 |||||||||||||||||||| Sbjct: 136710 tatattattagattatatac 136691
>dbj|AB056726.1| Emericella nidulans kexB mRNA for kexin like processing protease, complete cds Length = 2785 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 ggcgacaaaggtgtcgctgc 370 |||||||||||||||||||| Sbjct: 1622 ggcgacaaaggtgtcgctgc 1641
>emb|BX323557.8| Zebrafish DNA sequence from clone DKEYP-86B9 in linkage group 5, complete sequence Length = 223754 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgtcacaattgttatccaca 216 |||||||||||||||||||| Sbjct: 35337 tgtcacaattgttatccaca 35318
>emb|BX072549.4| Zebrafish DNA sequence from clone CH211-114A17 in linkage group 5, complete sequence Length = 167182 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgtcacaattgttatccaca 216 |||||||||||||||||||| Sbjct: 71794 tgtcacaattgttatccaca 71775
>emb|AL732544.12| Zebrafish DNA sequence from clone BUSM1-6I1 in linkage group 7, complete sequence Length = 135141 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 actatattattagattatat 138 |||||||||||||||||||| Sbjct: 101378 actatattattagattatat 101359
>dbj|AP001547.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-802F5, complete sequence Length = 144493 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 attagaacacaagctccaca 84 |||||||||||||||||||| Sbjct: 101873 attagaacacaagctccaca 101854
>gb|AC147597.2| Gallus gallus BAC clone CH261-100D18 from chromosome unknown, complete sequence Length = 168372 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 392 agaaatgaagctttgtatgagctgatca 419 |||||||||||||| ||||| ||||||| Sbjct: 161343 agaaatgaagctttatatgaactgatca 161316
>dbj|AP004941.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT25N10, TM0109, complete sequence Length = 75234 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 taactatattattagattat 136 |||||||||||||||||||| Sbjct: 46809 taactatattattagattat 46828 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,849,954 Number of Sequences: 3902068 Number of extensions: 3849954 Number of successful extensions: 72456 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72337 Number of HSP's gapped (non-prelim): 119 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)