ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5i16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UL92_EBV (P03223) Protein BDLF4 29 3.5
2KCMB4_MOUSE (Q9JIN6) Calcium-activated potassium channel beta su... 28 6.0

>UL92_EBV (P03223) Protein BDLF4|
          Length = 225

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 34  TKIQXTATDDDTWWRPEETMGRTINCATHMYRFFL 138
           T+I+    D    W PE+  G       H+Y +FL
Sbjct: 91  TEIRQDTQDQRDKWEPEQVQGLVKTVVNHLYHYFL 125



to top

>KCMB4_MOUSE (Q9JIN6) Calcium-activated potassium channel beta subunit 4|
           (Calcium-activated potassium channel, subfamily M, beta
           subunit 4) (Maxi K channel beta subunit 4) (BK channel
           beta subunit 4) (Slo-beta 4) (K(VCA)beta 4)
           (Charybdotoxin receptor bet
          Length = 210

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -2

Query: 147 QHDQEKPVHMCRTIDRSS--HCFFWPPPCVIVG 55
           QH + + V + RT D  +  HCF WP    +VG
Sbjct: 152 QHQRPEDVLLQRTHDEIALLHCFLWPVVAFVVG 184


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,834,379
Number of Sequences: 219361
Number of extensions: 442325
Number of successful extensions: 852
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top