ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5i12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB117990.1| Oryza sativa (japonica cultivar-group) bip102 mR... 92 3e-15
2dbj|AK073164.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 3e-15
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 82 2e-12
4gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare str... 82 2e-12
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
6dbj|AK099754.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
7dbj|AK101143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
8dbj|AB015431.1| Oryza sativa mRNA for SAR DNA binding protein, p... 82 2e-12
9gb|AY106099.1| Zea mays PCO066535 mRNA sequence 76 2e-10
10gb|AY814548.1| Schistosoma japonicum SJCHGC02840 protein mRNA, c... 42 2.1
11emb|AL611966.11| Human DNA sequence from clone RP11-89K2 on chro... 42 2.1
12emb|BX511272.9| Zebrafish DNA sequence from clone DKEY-276L13 in... 42 2.1
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
14dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
15dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 42 2.1
16dbj|AK105740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
17ref|XM_757091.1| Ustilago maydis 521 hypothetical protein (UM060... 40 8.4
18gb|AC122251.4| Mus musculus BAC clone RP23-167J15 from chromosom... 40 8.4
19gb|AC133100.5| Mus musculus BAC clone RP23-98O11 from chromosome... 40 8.4
20emb|AL050342.42|HSDJ655K7 Human DNA sequence from clone RP4-655K... 40 8.4
21emb|AL031431.8|HS462O23 Human DNA sequence from clone RP3-462O23... 40 8.4
22gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 8.4
23gb|AC157373.3| Medicago truncatula chromosome 7 BAC clone mth2-1... 40 8.4
24emb|BX119954.10| Zebrafish DNA sequence from clone CH211-286O14,... 40 8.4
25emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, co... 40 8.4
26emb|BX001033.6| Zebrafish DNA sequence from clone CH211-286F4 in... 40 8.4
27gb|AC134614.4| Mus musculus BAC clone RP23-148D12 from 14, compl... 40 8.4
28gb|AC161878.3| Mus musculus BAC clone RP23-303B4 from chromosome... 40 8.4
29emb|AL928925.6| Mouse DNA sequence from clone RP23-405K7 on chro... 40 8.4 
>dbj|AB117990.1| Oryza sativa (japonica cultivar-group) bip102 mRNA for BRI1-KD
           interacting protein 102, partial cds
          Length = 806

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 120/144 (83%), Gaps = 3/144 (2%)
 Strand = Plus / Minus

                                                                       
Query: 479 cttctttggtgtttcttcagttgtttgcccgaccactagatctgctgctgggttgtaagt 538
           ||||||||| ||||||||||| | ||| || |  || ||||| || || || ||||| ||
Sbjct: 226 cttctttggagtttcttcagtggattgtccaagtaccagatcagccgcaggattgtatgt 167

                                                                       
Query: 539 tttagcgggagtgatcaaagcaccaccacccttc---cggtccttttcatacgcttcaat 595
            ||||| |||||||| ||||| ||| ||||||||   ||||||||||||||| |||| ||
Sbjct: 166 cttagcaggagtgattaaagccccagcacccttcttccggtccttttcatacacttctat 107

                                   
Query: 596 cttgggctttccttttgtggaacc 619
           ||||||||||||||| ||||||||
Sbjct: 106 cttgggctttcctttagtggaacc 83
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>dbj|AK073164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023B01, full
            insert sequence
          Length = 2147

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 120/144 (83%), Gaps = 3/144 (2%)
 Strand = Plus / Minus

                                                                        
Query: 479  cttctttggtgtttcttcagttgtttgcccgaccactagatctgctgctgggttgtaagt 538
            ||||||||| ||||||||||| | ||| || |  || ||||| || || || ||||| ||
Sbjct: 1565 cttctttggagtttcttcagtggattgtccaagtaccagatcagccgcaggattgtatgt 1506

                                                                        
Query: 539  tttagcgggagtgatcaaagcaccaccacccttc---cggtccttttcatacgcttcaat 595
             ||||| |||||||| ||||| ||| ||||||||   ||||||||||||||| |||| ||
Sbjct: 1505 cttagcaggagtgattaaagccccagcacccttcttccggtccttttcatacacttctat 1446

                                    
Query: 596  cttgggctttccttttgtggaacc 619
            ||||||||||||||| ||||||||
Sbjct: 1445 cttgggctttcctttagtggaacc 1422
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 73/83 (87%), Gaps = 3/83 (3%)
 Strand = Plus / Plus

                                                                            
Query: 540      ttagcgggagtgatcaaagcaccaccacccttc---cggtccttttcatacgcttcaatc 596
                ||||| |||||||| ||||| ||| ||||||||   ||||||||||||||| |||| |||
Sbjct: 13108942 ttagcaggagtgattaaagccccagcacccttcttccggtccttttcatacacttctatc 13109001

                                       
Query: 597      ttgggctttccttttgtggaacc 619
                |||||||||||||| ||||||||
Sbjct: 13109002 ttgggctttcctttagtggaacc 13109024



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                       
Query: 569      cttccggtccttttcatacgcttcaatcttgggctttcc 607
                ||||||||||||||||||| |||| ||||||||||||||
Sbjct: 13101565 cttccggtccttttcatacacttctatcttgggctttcc 13101603



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 50/58 (86%), Gaps = 3/58 (5%)
 Strand = Plus / Plus

                                                                          
Query: 445      cctcttggtgcttcctcttctttgaagccacctc---cttctttggtgtttcttcagt 499
                ||||||| || |||||||||||||||||  | ||   |||||||||||||||||||||
Sbjct: 13101208 cctcttgatgtttcctcttctttgaagcaccttcaggcttctttggtgtttcttcagt 13101265
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>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07,
              from chromosome 3, complete sequence
          Length = 151173

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 73/83 (87%), Gaps = 3/83 (3%)
 Strand = Plus / Minus

                                                                          
Query: 540    ttagcgggagtgatcaaagcaccaccacccttc---cggtccttttcatacgcttcaatc 596
              ||||| |||||||| ||||| ||| ||||||||   ||||||||||||||| |||| |||
Sbjct: 117696 ttagcaggagtgattaaagccccagcacccttcttccggtccttttcatacacttctatc 117637

                                     
Query: 597    ttgggctttccttttgtggaacc 619
              |||||||||||||| ||||||||
Sbjct: 117636 ttgggctttcctttagtggaacc 117614



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 569    cttccggtccttttcatacgcttcaatcttgggctttcc 607
              ||||||||||||||||||| |||| ||||||||||||||
Sbjct: 125073 cttccggtccttttcatacacttctatcttgggctttcc 125035



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 50/58 (86%), Gaps = 3/58 (5%)
 Strand = Plus / Minus

                                                                        
Query: 445    cctcttggtgcttcctcttctttgaagccacctc---cttctttggtgtttcttcagt 499
              ||||||| || |||||||||||||||||  | ||   |||||||||||||||||||||
Sbjct: 125430 cctcttgatgtttcctcttctttgaagcaccttcaggcttctttggtgtttcttcagt 125373
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 73/83 (87%), Gaps = 3/83 (3%)
 Strand = Plus / Plus

                                                                            
Query: 540      ttagcgggagtgatcaaagcaccaccacccttc---cggtccttttcatacgcttcaatc 596
                ||||| |||||||| ||||| ||| ||||||||   ||||||||||||||| |||| |||
Sbjct: 13105717 ttagcaggagtgattaaagccccagcacccttcttccggtccttttcatacacttctatc 13105776

                                       
Query: 597      ttgggctttccttttgtggaacc 619
                |||||||||||||| ||||||||
Sbjct: 13105777 ttgggctttcctttagtggaacc 13105799



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                       
Query: 569      cttccggtccttttcatacgcttcaatcttgggctttcc 607
                ||||||||||||||||||| |||| ||||||||||||||
Sbjct: 13098340 cttccggtccttttcatacacttctatcttgggctttcc 13098378



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 50/58 (86%), Gaps = 3/58 (5%)
 Strand = Plus / Plus

                                                                          
Query: 445      cctcttggtgcttcctcttctttgaagccacctc---cttctttggtgtttcttcagt 499
                ||||||| || |||||||||||||||||  | ||   |||||||||||||||||||||
Sbjct: 13097983 cctcttgatgtttcctcttctttgaagcaccttcaggcttctttggtgtttcttcagt 13098040
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>dbj|AK099754.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092O17, full
            insert sequence
          Length = 2340

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 138/169 (81%), Gaps = 6/169 (3%)
 Strand = Plus / Minus

                                                                        
Query: 445  cctcttggtgcttcctcttctttgaagccacctc---cttctttggtgtttcttcagttg 501
            ||||||| || |||||||||||||||||  | ||   ||||||||||||||||||||| |
Sbjct: 1727 cctcttgatgtttcctcttctttgaagcaccttcaggcttctttggtgtttcttcagtgg 1668

                                                                        
Query: 502  tttgcccgaccactagatctgctgctgggttgtaagttttagcgggagtgatcaaagcac 561
             ||| || |  || ||||| || || || ||||| || || || |||||||| ||||| |
Sbjct: 1667 attgtccaagtaccagatcagccgcaggattgtatgtcttggcaggagtgattaaagccc 1608

                                                             
Query: 562  caccacccttc---cggtccttttcatacgcttcaatcttgggctttcc 607
            || ||||||||   ||||||||||||||| |||| ||||||||||||||
Sbjct: 1607 cagcacccttcttccggtccttttcatacacttctatcttgggctttcc 1559
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>dbj|AK101143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026N20, full
            insert sequence
          Length = 1882

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 138/169 (81%), Gaps = 6/169 (3%)
 Strand = Plus / Minus

                                                                        
Query: 445  cctcttggtgcttcctcttctttgaagccacctc---cttctttggtgtttcttcagttg 501
            ||||||| || |||||||||||||||||  | ||   ||||||||||||||||||||| |
Sbjct: 1612 cctcttgatgtttcctcttctttgaagcaccttcaggcttctttggtgtttcttcagtgg 1553

                                                                        
Query: 502  tttgcccgaccactagatctgctgctgggttgtaagttttagcgggagtgatcaaagcac 561
             ||| || |  || ||||| || || || ||||| || || || |||||||| ||||| |
Sbjct: 1552 attgtccaagtaccagatcagccgcaggattgtatgtcttggcaggagtgattaaagccc 1493

                                                             
Query: 562  caccacccttc---cggtccttttcatacgcttcaatcttgggctttcc 607
            || ||||||||   ||||||||||||||| |||| ||||||||||||||
Sbjct: 1492 cagcacccttcttccggtccttttcatacacttctatcttgggctttcc 1444
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>dbj|AB015431.1| Oryza sativa mRNA for SAR DNA binding protein, partial cds
          Length = 1638

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 138/169 (81%), Gaps = 6/169 (3%)
 Strand = Plus / Minus

                                                                        
Query: 445  cctcttggtgcttcctcttctttgaagccacctc---cttctttggtgtttcttcagttg 501
            ||||||| || |||||||||||||||||  | ||   ||||||||||||||||||||| |
Sbjct: 1581 cctcttgatgtttcctcttctttgaagcaccttcaggcttctttggtgtttcttcagtgg 1522

                                                                        
Query: 502  tttgcccgaccactagatctgctgctgggttgtaagttttagcgggagtgatcaaagcac 561
             ||| || |  || ||||| || || || ||||| || || || |||||||| ||||| |
Sbjct: 1521 attgtccaagtaccagatcagccgcaggattgtatgtcttggcaggagtgattaaagccc 1462

                                                             
Query: 562  caccacccttc---cggtccttttcatacgcttcaatcttgggctttcc 607
            || ||||||||   ||||||||||||||| |||| ||||||||||||||
Sbjct: 1461 cagcacccttcttccggtccttttcatacacttctatcttgggctttcc 1413
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>gb|AY106099.1| Zea mays PCO066535 mRNA sequence
          Length = 1500

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 91/108 (84%), Gaps = 3/108 (2%)
 Strand = Plus / Minus

                                                                       
Query: 516 agatctgctgctgggttgtaagttttagcgggagtgatcaaagcaccaccaccct---tc 572
           ||||| ||||| |||||||| || ||||| |||||  | ||||| ||| ||||||   ||
Sbjct: 883 agatcagctgcagggttgtatgtcttagcaggagttgttaaagccccagcaccctgcttc 824

                                                           
Query: 573 cggtccttttcatacgcttcaatcttgggctttccttttgtggaacca 620
           ||||||||||||||| |||| ||||||||||| || ||||||||||||
Sbjct: 823 cggtccttttcatacacttctatcttgggcttcccctttgtggaacca 776



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 42/47 (89%), Gaps = 3/47 (6%)
 Strand = Plus / Minus

                                                          
Query: 456 ttcctcttctttgaagccacctc---cttctttggtgtttcttcagt 499
           |||||||||||||||||||  ||   |||||||||||||||||||||
Sbjct: 937 ttcctcttctttgaagccaattctgacttctttggtgtttcttcagt 891
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>gb|AY814548.1| Schistosoma japonicum SJCHGC02840 protein mRNA, complete cds
          Length = 1081

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 47  gtcgctgctagtcctaatgtg 67
           |||||||||||||||||||||
Sbjct: 620 gtcgctgctagtcctaatgtg 640
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>emb|AL611966.11| Human DNA sequence from clone RP11-89K2 on chromosome 1, complete
            sequence
          Length = 68019

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 553  tcaaagcaccaccacccttccggtccttt 581
            ||||||||||||| ||||||| |||||||
Sbjct: 2028 tcaaagcaccaccccccttccagtccttt 2056
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>emb|BX511272.9| Zebrafish DNA sequence from clone DKEY-276L13 in linkage group 6,
             complete sequence
          Length = 208912

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 272   atcagctgcaggggtctcctc 292
             |||||||||||||||||||||
Sbjct: 32061 atcagctgcaggggtctcctc 32041
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 326      gctagcatcagcatcagctgcggga 350
                ||||||||||||||||||| |||||
Sbjct: 40434417 gctagcatcagcatcagctacggga 40434393
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>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0592G05
          Length = 146220

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 326   gctagcatcagcatcagctgcggga 350
             ||||||||||||||||||| |||||
Sbjct: 85658 gctagcatcagcatcagctacggga 85634
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 439     gttcttcctcttggtgcttcc 459
               |||||||||||||||||||||
Sbjct: 1435713 gttcttcctcttggtgcttcc 1435693
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>dbj|AK105740.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-A06, full
            insert sequence
          Length = 2854

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 326  gctagcatcagcatcagctgcggga 350
            ||||||||||||||||||| |||||
Sbjct: 2468 gctagcatcagcatcagctacggga 2444
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>ref|XM_757091.1| Ustilago maydis 521 hypothetical protein (UM06037.1) partial mRNA
          Length = 1962

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  cgctagcatcagcatcagct 344
            ||||||||||||||||||||
Sbjct: 1103 cgctagcatcagcatcagct 1122
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>gb|AC122251.4| Mus musculus BAC clone RP23-167J15 from chromosome 14, complete sequence
          Length = 204588

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 593    aatcttgggctttccttttgtgga 616
              |||||||||||||||||| |||||
Sbjct: 176803 aatcttgggctttcctttggtgga 176780
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>gb|AC133100.5| Mus musculus BAC clone RP23-98O11 from chromosome 19, complete
            sequence
          Length = 204855

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 480  ttctttggtgtttcttcagt 499
            ||||||||||||||||||||
Sbjct: 5409 ttctttggtgtttcttcagt 5390
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>emb|AL050342.42|HSDJ655K7 Human DNA sequence from clone RP4-655K7 on chromosome 1p35.3-36.13
            Contains part of a gene encoding a novel protein,,
            complete sequence
          Length = 116857

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 485  tggtgtttcttcagttgtttgccc 508
            ||||| ||||||||||||||||||
Sbjct: 9923 tggtgattcttcagttgtttgccc 9946
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>emb|AL031431.8|HS462O23 Human DNA sequence from clone RP3-462O23 on chromosome 1p35.1-36.12
              Contains the 3' end of the gene for sister-of-mammalian
              grainyhead (SOM), a novel gene (LOC90529) and a novel gene
              (DJ462O23.2), complete sequence
          Length = 154154

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     gaatggcaagtcccaaaact 103
              ||||||||||||||||||||
Sbjct: 131116 gaatggcaagtcccaaaact 131097
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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 487     gtgtttcttcagttgtttgc 506
               ||||||||||||||||||||
Sbjct: 2811041 gtgtttcttcagttgtttgc 2811060
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>gb|AC157373.3| Medicago truncatula chromosome 7 BAC clone mth2-108g9, complete
             sequence
          Length = 95326

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 442   cttcctcttggtgcttcctcttct 465
             ||||||||||||| ||||||||||
Sbjct: 17596 cttcctcttggtgtttcctcttct 17573
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>emb|BX119954.10| Zebrafish DNA sequence from clone CH211-286O14, complete sequence
          Length = 155287

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   gtgtttcttcagttgtttgc 506
             ||||||||||||||||||||
Sbjct: 86760 gtgtttcttcagttgtttgc 86741
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>emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, complete sequence
          Length = 267826

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 486   ggtgtttcttcagttgtttg 505
             ||||||||||||||||||||
Sbjct: 62288 ggtgtttcttcagttgtttg 62307
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>emb|BX001033.6| Zebrafish DNA sequence from clone CH211-286F4 in linkage group 7,
             complete sequence
          Length = 144689

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 485   tggtgtttcttcagttgttt 504
             ||||||||||||||||||||
Sbjct: 91379 tggtgtttcttcagttgttt 91398
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>gb|AC134614.4| Mus musculus BAC clone RP23-148D12 from 14, complete sequence
          Length = 209278

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 593   aatcttgggctttccttttgtgga 616
             |||||||||||||||||| |||||
Sbjct: 24398 aatcttgggctttcctttggtgga 24375
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>gb|AC161878.3| Mus musculus BAC clone RP23-303B4 from chromosome 1, complete sequence
          Length = 169556

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    aagtcccaaaactttcagac 110
             ||||||||||||||||||||
Sbjct: 28231 aagtcccaaaactttcagac 28212
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>emb|AL928925.6| Mouse DNA sequence from clone RP23-405K7 on chromosome 2, complete
              sequence
          Length = 145382

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 480    ttctttggtgtttcttcagt 499
              ||||||||||||||||||||
Sbjct: 118999 ttctttggtgtttcttcagt 119018


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,307,304
Number of Sequences: 3902068
Number of extensions: 4307304
Number of successful extensions: 78956
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78758
Number of HSP's gapped (non-prelim): 192
length of query: 620
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 597
effective length of database: 17,143,297,704
effective search space: 10234548729288
effective search space used: 10234548729288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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