ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5i08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRPM7_MOUSE (Q923J1) Transient receptor potential cation channel... 29 4.7
2TRPM7_HUMAN (Q96QT4) Transient receptor potential cation channel... 29 6.2
3RNF38_HUMAN (Q9H0F5) RING finger protein 38 28 8.1
4RNF38_MOUSE (Q8BI21) RING finger protein 38 28 8.1

>TRPM7_MOUSE (Q923J1) Transient receptor potential cation channel subfamily M|
           member 7 (EC 2.7.11.1) (Long transient receptor
           potential channel 7) (LTrpC7) (Channel-kinase 1)
           (Transient receptor potential-phospholipase
           C-interacting kinase) (TRP-PLIK)
          Length = 1863

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 14  SYTITYTEIKQRVLFNRSIEEWPYNLHTTNTDDD 115
           S  + Y+++K    FN++IEEW    HT  +  D
Sbjct: 57  SLAMKYSDVKLGEHFNQAIEEWSVEKHTEQSPTD 90



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>TRPM7_HUMAN (Q96QT4) Transient receptor potential cation channel subfamily M|
           member 7 (EC 2.7.11.1) (Long transient receptor
           potential channel 7) (LTrpC7) (Channel-kinase 1)
          Length = 1865

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 14  SYTITYTEIKQRVLFNRSIEEWPYNLHTTNTDDD 115
           S  + Y+++K    FN++IEEW    HT  +  D
Sbjct: 57  SLAMKYSDVKLGDHFNQAIEEWSVEKHTEQSPTD 90



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>RNF38_HUMAN (Q9H0F5) RING finger protein 38|
          Length = 515

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 265 IDGDACQIHAPAARPCNPVLLGRPGAIV-FFLAVSGGLGRRREGEMQLLGNH 417
           I  D   IH P   P +P  L  PG  V F    S    +R E E++LLG H
Sbjct: 267 ISSDPFLIHPPHLSPHHPPHLPPPGQFVPFQTQQSRSPLQRIENEVELLGEH 318



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>RNF38_MOUSE (Q8BI21) RING finger protein 38|
          Length = 518

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 265 IDGDACQIHAPAARPCNPVLLGRPGAIV-FFLAVSGGLGRRREGEMQLLGNH 417
           I  D   IH P   P +P  L  PG  V F    S    +R E E++LLG H
Sbjct: 270 ISSDPFLIHPPHLSPHHPPHLPPPGQFVPFQTQQSRSPLQRIENEVELLGEH 321


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,629,139
Number of Sequences: 219361
Number of extensions: 988988
Number of successful extensions: 2826
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2826
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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