>SF3A3_MOUSE (Q9D554) Splicing factor 3A subunit 3 (Spliceosome-associated|
           protein 61) (SAP 61) (SF3a60)
          Length = 501

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 24/41 (58%), Positives = 31/41 (75%)
 Frame = -3

Query: 303 VDLATFSSAAELEALGMEKLKLELQTRGLKCGGTLKERAAR 181
           +DL+ FSS  EL +LG+++LK  L   GLKCGGTL+ERA R
Sbjct: 244 LDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQR 284

>SF3A3_HUMAN (Q12874) Splicing factor 3A subunit 3 (Spliceosome-associated|
           protein 61) (SAP 61) (SF3a60)
          Length = 501

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 24/41 (58%), Positives = 31/41 (75%)
 Frame = -3

Query: 303 VDLATFSSAAELEALGMEKLKLELQTRGLKCGGTLKERAAR 181
           +DL+ FSS  EL +LG+++LK  L   GLKCGGTL+ERA R
Sbjct: 244 LDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQR 284

>NOI_DROME (O46106) Splicing factor 3A subunit 3 (Protein noisette)|
          Length = 503

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 24/41 (58%), Positives = 31/41 (75%)
 Frame = -3

Query: 303 VDLATFSSAAELEALGMEKLKLELQTRGLKCGGTLKERAAR 181
           +DL+ FSS  EL +LG+++LK  L   GLKCGGTL+ERA R
Sbjct: 244 LDLSAFSSWEELASLGLDRLKSALVALGLKCGGTLEERAQR 284

>YHU3_YEAST (P38844) Protein YHR143W precursor|
          Length = 325

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 423 SSDFRTSSERVFLPSEVPFPKVLSGASDFRTSSERVLLPFSEVPFS 560
           SS FR +S   F+ S  PF   LS +S   TSS       S  P S
Sbjct: 149 SSGFRLTSSSAFVSSTAPFSSQLSSSSSSETSSSSFSTSSSSAPLS 194

>S6A14_MOUSE (Q9JMA9) Sodium- and chloride-dependent neutral and basic amino|
           acid transporter B(0+) (Amino acid transporter ATB0+)
           (Colonic system B0+ amino acid transporter CATB0+)
           (Solute carrier family 6 member 14)
          Length = 638

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
 Frame = -1

Query: 176 SF*KQLHWINYQ----RSCSRNPTPEGSEM*YYSVK---KLRWQVHLQYCTCCNGSETFR 18
           SF   L W N       +CSR P   G  +   + +    + W V+    TC NGSE FR
Sbjct: 146 SFQSVLPWANCSSWADENCSRTPIVTGCNVSIGAGEMFMNISW-VNTNNLTCLNGSEVFR 204

Query: 17  PG 12
           PG
Sbjct: 205 PG 206

>LPXK_LEGPL (Q5WVN3) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 323

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
 Frame = +1

Query: 409 PHRFYHPISELPLK--EYSYPQKYHFQKCSQEHLISELLLKE------YSYHSQKFHFQK 564
           P RFY  +S+L +K   YSYP  + F+      +   +++ E      YS+ S K ++  
Sbjct: 241 PQRFYSTLSQLGIKFNPYSYPDHHQFKPHDLNDIDLPVIMTEKDAVKCYSFSSDKLYYLP 300

Query: 565 V 567
           V
Sbjct: 301 V 301

>LPXK_LEGPH (Q5ZUI0) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 323

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
 Frame = +1

Query: 409 PHRFYHPISELPLK--EYSYPQKYHFQKCSQEHLISELLLKE------YSYHSQKFHFQK 564
           P RFY  +S+L +K   YSYP  + F+      +   +++ E      YS+ S K ++  
Sbjct: 241 PQRFYSTLSQLGIKFNPYSYPDHHQFKPHDLNDIDLPVIMTEKDAVKCYSFSSDKLYYLP 300

Query: 565 V 567
           V
Sbjct: 301 V 301

>LPXK_LEGPA (Q5X499) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 323

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
 Frame = +1

Query: 409 PHRFYHPISELPLK--EYSYPQKYHFQKCSQEHLISELLLKE------YSYHSQKFHFQK 564
           P RFY  +S+L +K   YSYP  + F+      +   +++ E      YS+ S K ++  
Sbjct: 241 PQRFYSTLSQLGIKFNPYSYPDHHQFKPHDLNDIDLPVIMTEKDAVKCYSFSSDKLYYLP 300

Query: 565 V 567
           V
Sbjct: 301 V 301

>MTCH1_HUMAN (Q9NZJ7) Mitochondrial carrier homolog 1 (Presenilin-associated|
           protein)
          Length = 389

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 18/55 (32%), Positives = 32/55 (58%)
 Frame = +3

Query: 369 GH*GVMM*LNPVLSTSVLSSDFRTSSERVFLPSEVPFPKVLSGASDFRTSSERVL 533
           G  G+   L+P L ++ LS+  R S ++VF P E+   + +S   D +TS ++V+
Sbjct: 144 GKIGLFRGLSPRLMSNALSTVTRGSMKKVFPPDEI---EQVSNKDDMKTSLKKVV 195


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,328,266
Number of Sequences: 219361
Number of extensions: 1423981
Number of successful extensions: 4955
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4954
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)