ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5i04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192055.1| Oryza sativa (japonica cultivar-group), predic... 141 3e-30
2dbj|AK067869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 3e-30
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
4dbj|AP004363.3| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
5gb|BT017460.1| Zea mays clone EL01N0407D06.c mRNA sequence 103 6e-19
6gb|AY111074.1| Zea mays CL3554_1 mRNA sequence 98 4e-17
7emb|BX470264.22| Zebrafish DNA sequence from clone CH211-252F13 ... 44 0.50
8gb|AC106334.8| Rattus norvegicus BAC CH230-185M3 (Children's Ho... 44 0.50
9gb|AC009139.8| Homo sapiens chromosome 16 clone RP11-538I12, com... 42 2.0
10gb|AC010548.10| Homo sapiens chromosome 16 clone RP11-518I8, com... 42 2.0
11dbj|AP004923.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 2.0
12gb|AC098849.9| Mus musculus chromosome 3, clone RP23-12L23, comp... 40 7.8
13gb|AC116728.12| Mus musculus chromosome 3, clone RP23-345H12, co... 40 7.8
14gb|AC119210.11| Mus musculus chromosome 18, clone RP24-190H7, co... 40 7.8
15gb|AC114583.7| Mus musculus chromosome 1, clone RP23-195A24, com... 40 7.8
16gb|AC122410.4| Mus musculus BAC clone RP24-142A1 from chromosome... 40 7.8
17gb|AC122884.2| Mus musculus BAC clone RP23-88O13 from 5, complet... 40 7.8
18emb|CR717036.2|CNS0GG7P Tetraodon nigroviridis full-length cDNA 40 7.8
19emb|CR715680.2|CNS0GF64 Tetraodon nigroviridis full-length cDNA 40 7.8
20emb|CR715608.2|CNS0GF44 Tetraodon nigroviridis full-length cDNA 40 7.8
21emb|CR714280.2|CNS0GE38 Tetraodon nigroviridis full-length cDNA 40 7.8
22emb|CR710650.2|CNS0GBAE Tetraodon nigroviridis full-length cDNA 40 7.8
23emb|AL845448.3| Mouse DNA sequence from clone RP23-130M24 on chr... 40 7.8
24emb|Z99497.1|HS73A14 Human DNA sequence from clone RP1-73A14 on ... 40 7.8
25emb|AL121779.11|HS1094O14 Human DNA sequence from clone RP5-1094... 40 7.8
26gb|AC018931.9| Homo sapiens chromosome 18, clone RP11-418K9, com... 40 7.8
27gb|BC047399.1| Homo sapiens cDNA clone IMAGE:5271579 40 7.8
28gb|BC029493.1| Homo sapiens cDNA clone IMAGE:5271512 40 7.8
29dbj|AB191204.1| Oryzias latipes kal1.2 mRNA for anosmin-1.2, com... 40 7.8
30gb|AC099060.2| Homo sapiens chromosome 1 clone RP11-415A20, comp... 40 7.8
31gb|AC008512.8| Homo sapiens chromosome 5 clone CTC-454K8, comple... 40 7.8
32gb|AC026409.4| Homo sapiens chromosome 5 clone CTC-437M9, comple... 40 7.8
33gb|AC021080.4|AC021080 Homo sapiens chromosome 5 clone CTC-203K1... 40 7.8
34gb|AC158322.1| Homo sapiens chromosome 12 clone WI2-1887B17, com... 40 7.8
35ref|NM_001014259.1| Rattus norvegicus similar to RIKEN cDNA 1500... 40 7.8
36gb|AY921041.1| Acipenser sinensis microsatellite AS-073 sequence 40 7.8
37dbj|AK030081.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 7.8
38gb|AC010083.5|AC010083 Homo sapiens BAC clone RP11-125L14 from 2... 40 7.8
39gb|AC110758.3| Homo sapiens BAC clone RP11-24D11 from 4, complet... 40 7.8
40gb|AC106894.4| Homo sapiens BAC clone RP11-141E13 from 4, comple... 40 7.8
41gb|AC008580.7| Homo sapiens chromosome 5 clone CTC-564J15, compl... 40 7.8
42gb|BC089990.1| Rattus norvegicus similar to RIKEN cDNA 1500004O1... 40 7.8
43gb|AC158656.2| Mus musculus BAC RP23-408F4 (Roswell Park Cancer... 40 7.8
44gb|AC119189.8| Mus musculus chromosome 1, clone RP24-178E16, com... 40 7.8
45dbj|AK066431.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.8
46gb|AC078927.20| Homo sapiens 12 BAC RP11-745O10 (Roswell Park Ca... 40 7.8
47gb|AC174449.2| Mus musculus BAC clone RP23-338O19 from chromosom... 40 7.8
48gb|AC005344.1| Homo sapiens 12 PAC RPCI1-53O8 (Roswell Park Canc... 40 7.8
49gb|U53183.1|RNU53183 Rattus norvegicus 250 kDa estrous-specific ... 40 7.8 
>ref|NM_192055.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1335

 Score =  141 bits (71), Expect = 3e-30
 Identities = 137/159 (86%)
 Strand = Plus / Minus

                                                                        
Query: 128  gcgagcagcttctttggtagtttatccagtggagttgttttcagaaggaacagtctggca 187
            |||| ||||||||||||||| || ||||| || ||||||||||||||||| || ||||||
Sbjct: 1310 gcgaacagcttctttggtagcttctccagaggtgttgttttcagaaggaaaagcctggca 1251

                                                                        
Query: 188  gcgcgctctttcaaagtgccaccgcattttaatccacgagtctggagctccagctttagc 247
            || |||||||  || |||||||| ||||||| ||||||| |||| | ||| ||||| || 
Sbjct: 1250 gcacgctcttgtaaggtgccaccacattttagtccacgattctgcaactctagcttgagt 1191

                                                   
Query: 248  ttctccatgccaagtgcctccaattctgctgctgaactg 286
             |||||||||||||| ||||||||||||| |||||||||
Sbjct: 1190 ctctccatgccaagtacctccaattctgcagctgaactg 1152



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 499  catctgatttcagaacttcttctgaaagagtactcttaccattctcag 546
            |||||| |||||  |||||||||||||||| |||   |||||||||||
Sbjct: 1018 catctggtttcaacacttcttctgaaagagcactaacaccattctcag 971
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>dbj|AK067869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128I02, full
            insert sequence
          Length = 1585

 Score =  141 bits (71), Expect = 3e-30
 Identities = 137/159 (86%)
 Strand = Plus / Minus

                                                                        
Query: 128  gcgagcagcttctttggtagtttatccagtggagttgttttcagaaggaacagtctggca 187
            |||| ||||||||||||||| || ||||| || ||||||||||||||||| || ||||||
Sbjct: 1405 gcgaacagcttctttggtagcttctccagaggtgttgttttcagaaggaaaagcctggca 1346

                                                                        
Query: 188  gcgcgctctttcaaagtgccaccgcattttaatccacgagtctggagctccagctttagc 247
            || |||||||  || |||||||| ||||||| ||||||| |||| | ||| ||||| || 
Sbjct: 1345 gcacgctcttgtaaggtgccaccacattttagtccacgattctgcaactctagcttgagt 1286

                                                   
Query: 248  ttctccatgccaagtgcctccaattctgctgctgaactg 286
             |||||||||||||| ||||||||||||| |||||||||
Sbjct: 1285 ctctccatgccaagtacctccaattctgcagctgaactg 1247



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 499  catctgatttcagaacttcttctgaaagagtactcttaccattctcag 546
            |||||| |||||  |||||||||||||||| |||   |||||||||||
Sbjct: 1113 catctggtttcaacacttcttctgaaagagcactaacaccattctcag 1066
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  109 bits (55), Expect = 1e-20
 Identities = 115/135 (85%)
 Strand = Plus / Minus

                                                                            
Query: 128      gcgagcagcttctttggtagtttatccagtggagttgttttcagaaggaacagtctggca 187
                |||| ||||||||||||||| || ||||| || ||||||||||||||||| || ||||||
Sbjct: 28076376 gcgaacagcttctttggtagcttctccagaggtgttgttttcagaaggaaaagcctggca 28076317

                                                                            
Query: 188      gcgcgctctttcaaagtgccaccgcattttaatccacgagtctggagctccagctttagc 247
                || |||||||  || |||||||| ||||||| ||||||| |||| | ||| ||||| || 
Sbjct: 28076316 gcacgctcttgtaaggtgccaccacattttagtccacgattctgcaactctagcttgagt 28076257

                               
Query: 248      ttctccatgccaagt 262
                 ||||||||||||||
Sbjct: 28076256 ctctccatgccaagt 28076242



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                                
Query: 499      catctgatttcagaacttcttctgaaagagtactcttaccattctcag 546
                |||||| |||||  |||||||||||||||| |||   |||||||||||
Sbjct: 28075273 catctggtttcaacacttcttctgaaagagcactaacaccattctcag 28075226
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>dbj|AP004363.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0019E03
          Length = 152092

 Score =  109 bits (55), Expect = 1e-20
 Identities = 115/135 (85%)
 Strand = Plus / Minus

                                                                         
Query: 128   gcgagcagcttctttggtagtttatccagtggagttgttttcagaaggaacagtctggca 187
             |||| ||||||||||||||| || ||||| || ||||||||||||||||| || ||||||
Sbjct: 91575 gcgaacagcttctttggtagcttctccagaggtgttgttttcagaaggaaaagcctggca 91516

                                                                         
Query: 188   gcgcgctctttcaaagtgccaccgcattttaatccacgagtctggagctccagctttagc 247
             || |||||||  || |||||||| ||||||| ||||||| |||| | ||| ||||| || 
Sbjct: 91515 gcacgctcttgtaaggtgccaccacattttagtccacgattctgcaactctagcttgagt 91456

                            
Query: 248   ttctccatgccaagt 262
              ||||||||||||||
Sbjct: 91455 ctctccatgccaagt 91441



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                             
Query: 499   catctgatttcagaacttcttctgaaagagtactcttaccattctcag 546
             |||||| |||||  |||||||||||||||| |||   |||||||||||
Sbjct: 90472 catctggtttcaacacttcttctgaaagagcactaacaccattctcag 90425
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>gb|BT017460.1| Zea mays clone EL01N0407D06.c mRNA sequence
          Length = 1098

 Score =  103 bits (52), Expect = 6e-19
 Identities = 130/156 (83%)
 Strand = Plus / Plus

                                                                       
Query: 131 agcagcttctttggtagtttatccagtggagttgttttcagaaggaacagtctggcagcg 190
           ||||||||||||||||  ||||||| ||||||||| |||| |||||| |||| || ||| 
Sbjct: 130 agcagcttctttggtaacttatccaatggagttgtcttcaaaaggaaaagtcgggtagct 189

                                                                       
Query: 191 cgctctttcaaagtgccaccgcattttaatccacgagtctggagctccagctttagcttc 250
           ||||| |  ||||| ||||| ||||||||||||||||  || ||||| |  |||||||||
Sbjct: 190 cgctcctgtaaagttccaccacattttaatccacgagattgcagctctatttttagcttc 249

                                               
Query: 251 tccatgccaagtgcctccaattctgctgctgaactg 286
           ||||  |||||  ||||||||||| | |||||||||
Sbjct: 250 tccaaaccaagcacctccaattctacagctgaactg 285



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 499 catctgatttcagaacttcttctgaa 524
           ||||||||||||| ||||||||||||
Sbjct: 491 catctgatttcagcacttcttctgaa 516
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>gb|AY111074.1| Zea mays CL3554_1 mRNA sequence
          Length = 925

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 128/156 (82%)
 Strand = Plus / Plus

                                                                       
Query: 131 agcagcttctttggtagtttatccagtggagttgttttcagaaggaacagtctggcagcg 190
           ||||||||||||||||  ||||||| ||||||||| ||||||||||| |||| || ||| 
Sbjct: 370 agcagcttctttggtaacttatccaatggagttgtcttcagaaggaagagtcgggtagct 429

                                                                       
Query: 191 cgctctttcaaagtgccaccgcattttaatccacgagtctggagctccagctttagcttc 250
           ||||| |  ||||| ||||| ||||||||||||||||  || ||||| |     ||||||
Sbjct: 430 cgctcctgtaaagttccaccacattttaatccacgagattgcagctctannnnnagcttc 489

                                               
Query: 251 tccatgccaagtgcctccaattctgctgctgaactg 286
           ||||  |||||  ||||||||||| | |||||||||
Sbjct: 490 tccagaccaagcacctccaattctacagctgaactg 525
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>emb|BX470264.22| Zebrafish DNA sequence from clone CH211-252F13 in linkage group 7,
             complete sequence
          Length = 168673

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 76    aattttttcacagaatagtattacat 101
             ||||||||||||||| ||||||||||
Sbjct: 31585 aattttttcacagaaaagtattacat 31560
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>gb|AC106334.8| Rattus norvegicus  BAC CH230-185M3 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 206745

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 80    ttttcacagaatagtattacat 101
             ||||||||||||||||||||||
Sbjct: 53799 ttttcacagaatagtattacat 53778
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>gb|AC009139.8| Homo sapiens chromosome 16 clone RP11-538I12, complete sequence
          Length = 178058

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 85     acagaatagtattacatctcacttc 109
              ||||||||||| |||||||||||||
Sbjct: 140495 acagaatagtaatacatctcacttc 140471
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>gb|AC010548.10| Homo sapiens chromosome 16 clone RP11-518I8, complete sequence
          Length = 206466

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 85     acagaatagtattacatctcacttc 109
              ||||||||||| |||||||||||||
Sbjct: 147209 acagaatagtaatacatctcacttc 147233
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>dbj|AP004923.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT18O13, TM0078,
             complete sequence
          Length = 73758

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 475   catttccaaaagtgctctcag 495
             |||||||||||||||||||||
Sbjct: 69701 catttccaaaagtgctctcag 69681
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>gb|AC098849.9| Mus musculus chromosome 3, clone RP23-12L23, complete sequence
          Length = 210441

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 552   ccattttcagaaagtgttta 571
             ||||||||||||||||||||
Sbjct: 79337 ccattttcagaaagtgttta 79318
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>gb|AC116728.12| Mus musculus chromosome 3, clone RP23-345H12, complete sequence
          Length = 192916

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 552  ccattttcagaaagtgttta 571
            ||||||||||||||||||||
Sbjct: 6208 ccattttcagaaagtgttta 6227
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>gb|AC119210.11| Mus musculus chromosome 18, clone RP24-190H7, complete sequence
          Length = 198006

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 519   tctgaaagagtactcttacc 538
             ||||||||||||||||||||
Sbjct: 45189 tctgaaagagtactcttacc 45170
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>gb|AC114583.7| Mus musculus chromosome 1, clone RP23-195A24, complete sequence
          Length = 227529

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    tccacaggctcctctgaaag 318
              ||||||||||||||||||||
Sbjct: 191437 tccacaggctcctctgaaag 191456
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>gb|AC122410.4| Mus musculus BAC clone RP24-142A1 from chromosome 6, complete sequence
          Length = 190744

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   ggtcattaaggagtgatgat 388
             ||||||||||||||||||||
Sbjct: 48939 ggtcattaaggagtgatgat 48920
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>gb|AC122884.2| Mus musculus BAC clone RP23-88O13 from 5, complete sequence
          Length = 160295

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 550   ttccattttcagaaagtgtt 569
             ||||||||||||||||||||
Sbjct: 99745 ttccattttcagaaagtgtt 99764
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>emb|CR717036.2|CNS0GG7P Tetraodon nigroviridis full-length cDNA
          Length = 999

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  tagtattacatctcacttcc 110
           ||||||||||||||||||||
Sbjct: 503 tagtattacatctcacttcc 484
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>emb|CR715680.2|CNS0GF64 Tetraodon nigroviridis full-length cDNA
          Length = 1215

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  tagtattacatctcacttcc 110
           ||||||||||||||||||||
Sbjct: 704 tagtattacatctcacttcc 685
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>emb|CR715608.2|CNS0GF44 Tetraodon nigroviridis full-length cDNA
          Length = 730

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  tagtattacatctcacttcc 110
           ||||||||||||||||||||
Sbjct: 102 tagtattacatctcacttcc 83
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>emb|CR714280.2|CNS0GE38 Tetraodon nigroviridis full-length cDNA
          Length = 494

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  tagtattacatctcacttcc 110
           ||||||||||||||||||||
Sbjct: 453 tagtattacatctcacttcc 434
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>emb|CR710650.2|CNS0GBAE Tetraodon nigroviridis full-length cDNA
          Length = 1191

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  tagtattacatctcacttcc 110
           ||||||||||||||||||||
Sbjct: 684 tagtattacatctcacttcc 665
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>emb|AL845448.3| Mouse DNA sequence from clone RP23-130M24 on chromosome X, complete
             sequence
          Length = 107805

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 491   ctcaggagcatctgatttca 510
             ||||||||||||||||||||
Sbjct: 43934 ctcaggagcatctgatttca 43953
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>emb|Z99497.1|HS73A14 Human DNA sequence from clone RP1-73A14 on chromosome Xq26.2-28
             Contains a pseudogene similar to part of a putative
             dimethyladenosine transferase (HSA9761), complete sequence
          Length = 106148

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   cagcttctttggtagtttat 152
             ||||||||||||||||||||
Sbjct: 50602 cagcttctttggtagtttat 50583
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>emb|AL121779.11|HS1094O14 Human DNA sequence from clone RP5-1094O14 on chromosome 20 Contains
             part of the PCSK2 gene for proprotein convertase
             subtilisin/kexin type 2, complete sequence
          Length = 60546

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 538   cattctcagaagttccattt 557
             ||||||||||||||||||||
Sbjct: 43548 cattctcagaagttccattt 43529
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>gb|AC018931.9| Homo sapiens chromosome 18, clone RP11-418K9, complete sequence
          Length = 185117

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 471    gtaccatttccaaaagtgct 490
              ||||||||||||||||||||
Sbjct: 127663 gtaccatttccaaaagtgct 127682
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>gb|BC047399.1| Homo sapiens cDNA clone IMAGE:5271579
          Length = 1589

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 496 gagcatctgatttcagaacttctt 519
           |||||||||||||| |||||||||
Sbjct: 441 gagcatctgatttctgaacttctt 464
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>gb|BC029493.1| Homo sapiens cDNA clone IMAGE:5271512
          Length = 1590

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 496 gagcatctgatttcagaacttctt 519
           |||||||||||||| |||||||||
Sbjct: 442 gagcatctgatttctgaacttctt 465
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>dbj|AB191204.1| Oryzias latipes kal1.2 mRNA for anosmin-1.2, complete cds
          Length = 3368

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 agaacttcttctgaaagagt 529
           ||||||||||||||||||||
Sbjct: 788 agaacttcttctgaaagagt 769
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>gb|AC099060.2| Homo sapiens chromosome 1 clone RP11-415A20, complete sequence
          Length = 152692

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     aattttttcacagaatagta 95
              ||||||||||||||||||||
Sbjct: 134348 aattttttcacagaatagta 134367
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>gb|AC008512.8| Homo sapiens chromosome 5 clone CTC-454K8, complete sequence
          Length = 110931

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    aattctgctgctgaactgaa 288
              ||||||||||||||||||||
Sbjct: 100767 aattctgctgctgaactgaa 100786
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>gb|AC026409.4| Homo sapiens chromosome 5 clone CTC-437M9, complete sequence
          Length = 163384

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   aattctgctgctgaactgaa 288
             ||||||||||||||||||||
Sbjct: 78535 aattctgctgctgaactgaa 78516
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>gb|AC021080.4|AC021080 Homo sapiens chromosome 5 clone CTC-203K17, complete sequence
          Length = 103522

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   aattctgctgctgaactgaa 288
             ||||||||||||||||||||
Sbjct: 85074 aattctgctgctgaactgaa 85093
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>gb|AC158322.1| Homo sapiens chromosome 12 clone WI2-1887B17, complete sequence
          Length = 32886

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   caattctgctgctgaactga 287
             ||||||||||||||||||||
Sbjct: 18740 caattctgctgctgaactga 18721
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>ref|NM_001014259.1| Rattus norvegicus similar to RIKEN cDNA 1500004O14 (LOC366277),
           mRNA
          Length = 995

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 78  ttttttcacagaatagtatt 97
           ||||||||||||||||||||
Sbjct: 971 ttttttcacagaatagtatt 952
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>gb|AY921041.1| Acipenser sinensis microsatellite AS-073 sequence
          Length = 190

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 43 caagtacagtattgcagatg 62
          ||||||||||||||||||||
Sbjct: 62 caagtacagtattgcagatg 43
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>dbj|AK030081.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4932436B18 product:similar to PMS1 PROTEIN
            HOMOLOG 1 (DNA MISMATCH REPAIR PROTEIN PMS1) [Homo
            sapiens], full insert sequence
          Length = 3991

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 299  tccacaggctcctctgaaag 318
            ||||||||||||||||||||
Sbjct: 1572 tccacaggctcctctgaaag 1553
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>gb|AC010083.5|AC010083 Homo sapiens BAC clone RP11-125L14 from 2, complete sequence
          Length = 200936

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 538    cattctcagaagttccattt 557
              ||||||||||||||||||||
Sbjct: 164618 cattctcagaagttccattt 164637
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>gb|AC110758.3| Homo sapiens BAC clone RP11-24D11 from 4, complete sequence
          Length = 165028

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 546    gaagttccattttcagaaag 565
              ||||||||||||||||||||
Sbjct: 130917 gaagttccattttcagaaag 130936
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>gb|AC106894.4| Homo sapiens BAC clone RP11-141E13 from 4, complete sequence
          Length = 183176

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 546  gaagttccattttcagaaag 565
            ||||||||||||||||||||
Sbjct: 4191 gaagttccattttcagaaag 4172
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>gb|AC008580.7| Homo sapiens chromosome 5 clone CTC-564J15, complete sequence
          Length = 122322

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  aattctgctgctgaactgaa 288
            ||||||||||||||||||||
Sbjct: 2002 aattctgctgctgaactgaa 1983
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>gb|BC089990.1| Rattus norvegicus similar to RIKEN cDNA 1500004O14, mRNA (cDNA
           clone MGC:109430 IMAGE:7319381), complete cds
          Length = 995

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 78  ttttttcacagaatagtatt 97
           ||||||||||||||||||||
Sbjct: 971 ttttttcacagaatagtatt 952
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>gb|AC158656.2| Mus musculus  BAC RP23-408F4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 194657

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 551    tccattttcagaaagtgttt 570
              ||||||||||||||||||||
Sbjct: 136108 tccattttcagaaagtgttt 136127
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>gb|AC119189.8| Mus musculus chromosome 1, clone RP24-178E16, complete sequence
          Length = 182530

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   tccacaggctcctctgaaag 318
             ||||||||||||||||||||
Sbjct: 32357 tccacaggctcctctgaaag 32376
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>dbj|AK066431.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013064N11, full
            insert sequence
          Length = 1175

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 499  catctgatttcagaacttcttctgaaagagtactcttaccattctcag 546
            |||||| |||||  |||||||||||||||| |||   |||||||||||
Sbjct: 1128 catctggtttcaacacttcttctgaaagagcactaacaccattctcag 1081
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>gb|AC078927.20| Homo sapiens 12 BAC RP11-745O10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 125777

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 496   gagcatctgatttcagaacttctt 519
             |||||||||||||| |||||||||
Sbjct: 11714 gagcatctgatttctgaacttctt 11691
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>gb|AC174449.2| Mus musculus BAC clone RP23-338O19 from chromosome 6, complete sequence
          Length = 217169

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 369    ggtcattaaggagtgatgat 388
              ||||||||||||||||||||
Sbjct: 170551 ggtcattaaggagtgatgat 170532
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>gb|AC005344.1| Homo sapiens 12 PAC RPCI1-53O8 (Roswell Park Cancer Institute Human PAC
              library) complete sequence
          Length = 153836

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    caattctgctgctgaactga 287
              ||||||||||||||||||||
Sbjct: 110664 caattctgctgctgaactga 110683
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>gb|U53183.1|RNU53183 Rattus norvegicus 250 kDa estrous-specific protein mRNA, partial
           cds
          Length = 260

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 78  ttttttcacagaatagtatt 97
           ||||||||||||||||||||
Sbjct: 220 ttttttcacagaatagtatt 201


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,396,333
Number of Sequences: 3902068
Number of extensions: 5396333
Number of successful extensions: 103192
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103080
Number of HSP's gapped (non-prelim): 111
length of query: 575
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 552
effective length of database: 17,143,297,704
effective search space: 9463100332608
effective search space used: 9463100332608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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