| Clone Name | rbags5i01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185280.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1101 Score = 238 bits (120), Expect = 1e-59 Identities = 209/239 (87%) Strand = Plus / Minus Query: 95 ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154 |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 1101 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 1042 Query: 155 actgatcgacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcaga 214 |||||||||||||||||||| ||| || |||||||||| ||||||||| || || ||||| Sbjct: 1041 actgatcgacttctccaacatgcgttgaagcctctcagattccttcttagtgtattcaga 982 Query: 215 gcccttctgcaatatcttctttgcaacgttcacatanatctttccgtgcttgacagcagg 274 |||||||| || |||||||||||| ||||||||| |||||||||| |||| ||||||| Sbjct: 981 gcccttctccatgatcttctttgcagagttcacatagatctttccgtacttggcagcagg 922 Query: 275 accactgagctttgcagcctcctcttcaattttagagaggatttccttccgcttgtcat 333 ||| ||||||| ||| | |||||||| ||||| |||||| ||| |||||||| |||| Sbjct: 921 gccagtgagcttcgcaacatcctcttccattttggagagggcttctttccgcttatcat 863
>dbj|AK103944.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A01, full insert sequence Length = 1431 Score = 238 bits (120), Expect = 1e-59 Identities = 209/239 (87%) Strand = Plus / Minus Query: 95 ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154 |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 1115 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 1056 Query: 155 actgatcgacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcaga 214 |||||||||||||||||||| ||| || |||||||||| ||||||||| || || ||||| Sbjct: 1055 actgatcgacttctccaacatgcgttgaagcctctcagattccttcttagtgtattcaga 996 Query: 215 gcccttctgcaatatcttctttgcaacgttcacatanatctttccgtgcttgacagcagg 274 |||||||| || |||||||||||| ||||||||| |||||||||| |||| ||||||| Sbjct: 995 gcccttctccatgatcttctttgcagagttcacatagatctttccgtacttggcagcagg 936 Query: 275 accactgagctttgcagcctcctcttcaattttagagaggatttccttccgcttgtcat 333 ||| ||||||| ||| | |||||||| ||||| |||||| ||| |||||||| |||| Sbjct: 935 gccagtgagcttcgcaacatcctcttccattttggagagggcttctttccgcttatcat 877
>dbj|AK098931.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023F18, full insert sequence Length = 1522 Score = 238 bits (120), Expect = 1e-59 Identities = 209/239 (87%) Strand = Plus / Minus Query: 95 ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154 |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 1156 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 1097 Query: 155 actgatcgacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcaga 214 |||||||||||||||||||| ||| || |||||||||| ||||||||| || || ||||| Sbjct: 1096 actgatcgacttctccaacatgcgttgaagcctctcagattccttcttagtgtattcaga 1037 Query: 215 gcccttctgcaatatcttctttgcaacgttcacatanatctttccgtgcttgacagcagg 274 |||||||| || |||||||||||| ||||||||| |||||||||| |||| ||||||| Sbjct: 1036 gcccttctccatgatcttctttgcagagttcacatagatctttccgtacttggcagcagg 977 Query: 275 accactgagctttgcagcctcctcttcaattttagagaggatttccttccgcttgtcat 333 ||| ||||||| ||| | |||||||| ||||| |||||| ||| |||||||| |||| Sbjct: 976 gccagtgagcttcgcaacatcctcttccattttggagagggcttctttccgcttatcat 918
>dbj|AK062024.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-G03, full insert sequence Length = 1544 Score = 238 bits (120), Expect = 1e-59 Identities = 209/239 (87%) Strand = Plus / Minus Query: 95 ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154 |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 1158 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 1099 Query: 155 actgatcgacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcaga 214 |||||||||||||||||||| ||| || |||||||||| ||||||||| || || ||||| Sbjct: 1098 actgatcgacttctccaacatgcgttgaagcctctcagattccttcttagtgtattcaga 1039 Query: 215 gcccttctgcaatatcttctttgcaacgttcacatanatctttccgtgcttgacagcagg 274 |||||||| || |||||||||||| ||||||||| |||||||||| |||| ||||||| Sbjct: 1038 gcccttctccatgatcttctttgcagagttcacatagatctttccgtacttggcagcagg 979 Query: 275 accactgagctttgcagcctcctcttcaattttagagaggatttccttccgcttgtcat 333 ||| ||||||| ||| | |||||||| ||||| |||||| ||| |||||||| |||| Sbjct: 978 gccagtgagcttcgcaacatcctcttccattttggagagggcttctttccgcttatcat 920
>dbj|AK099341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028P21, full insert sequence Length = 1528 Score = 216 bits (109), Expect = 4e-53 Identities = 209/242 (86%), Gaps = 3/242 (1%) Strand = Plus / Minus Query: 95 ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154 |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 1162 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 1103 Query: 155 actgatcgacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcaga 214 |||||||||||||||||||| ||| || |||||||||| ||||||||| || || ||||| Sbjct: 1102 actgatcgacttctccaacatgcgttgaagcctctcagattccttcttagtgtattcaga 1043 Query: 215 gcccttctgcaatatcttctttgcaacgttcacatanatctttccgtgc---ttgacagc 271 |||||||| || |||||||||||| ||||||||| |||||||||| | ||| |||| Sbjct: 1042 gcccttctccatgatcttctttgcagagttcacatagatctttccgtacctgttggcagc 983 Query: 272 aggaccactgagctttgcagcctcctcttcaattttagagaggatttccttccgcttgtc 331 ||| ||| ||||||| ||| | |||||||| ||||| |||||| ||| |||||||| || Sbjct: 982 agggccagtgagcttcgcaacatcctcttccattttggagagggcttctttccgcttatc 923 Query: 332 at 333 || Sbjct: 922 at 921
>gb|BT016699.1| Zea mays clone Contig532 mRNA sequence Length = 1425 Score = 208 bits (105), Expect = 1e-50 Identities = 228/270 (84%) Strand = Plus / Minus Query: 111 gaaagaatgttcttcttgatggcgaattcatcggctttggaaggactgatcgacttctcc 170 ||||||||||||||||| | | ||||||||| ||||||||||||||||| ||||||||| Sbjct: 1088 gaaagaatgttcttcttaacgatgaattcatcagctttggaaggactgattgacttctcc 1029 Query: 171 aacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttctgcaatatc 230 | || ||| || ||||||||||| |||||||| || |||||||||||||| | | ||| Sbjct: 1028 agcatgcggtgaagcctctcagtctccttcttagtgtagtcagagcccttgtctatgatc 969 Query: 231 ttctttgcaacgttcacatanatctttccgtgcttgacagcaggaccactgagctttgca 290 ||||||||| | ||||||| |||||||| |||||| | |||| ||| |||||||| ||| Sbjct: 968 ttctttgcagctgtcacatatatctttccatgcttggctgcagaaccgctgagcttagca 909 Query: 291 gcctcctcttcaattttagagaggatttccttccgcttgtcatcagcggcactgnggaaa 350 | |||||||| ||||||||||||| ||||||||||||||||||||| ||| || | || Sbjct: 908 acatcctcttctattttagagaggacttccttccgcttgtcatcagcagcattgagaaac 849 Query: 351 tccttgacaagagcatncaaacttgccaca 380 ||||| ||||||| || ||| |||| |||| Sbjct: 848 tccttcacaagaggattcaagcttggcaca 819
>gb|AY739289.1| Zea mays protein disulfide isomerase (PDIL2-2) mRNA, complete cds Length = 1408 Score = 208 bits (105), Expect = 1e-50 Identities = 228/270 (84%) Strand = Plus / Minus Query: 111 gaaagaatgttcttcttgatggcgaattcatcggctttggaaggactgatcgacttctcc 170 ||||||||||||||||| | | ||||||||| ||||||||||||||||| ||||||||| Sbjct: 1093 gaaagaatgttcttcttaacgatgaattcatcagctttggaaggactgattgacttctcc 1034 Query: 171 aacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttctgcaatatc 230 | || ||| || ||||||||||| |||||||| || |||||||||||||| | | ||| Sbjct: 1033 agcatgcggtgaagcctctcagtctccttcttagtgtagtcagagcccttgtctatgatc 974 Query: 231 ttctttgcaacgttcacatanatctttccgtgcttgacagcaggaccactgagctttgca 290 ||||||||| | ||||||| |||||||| |||||| | |||| ||| |||||||| ||| Sbjct: 973 ttctttgcagctgtcacatatatctttccatgcttggctgcagaaccgctgagcttagca 914 Query: 291 gcctcctcttcaattttagagaggatttccttccgcttgtcatcagcggcactgnggaaa 350 | |||||||| ||||||||||||| ||||||||||||||||||||| ||| || | || Sbjct: 913 acatcctcttctattttagagaggacttccttccgcttgtcatcagcagcattgagaaac 854 Query: 351 tccttgacaagagcatncaaacttgccaca 380 ||||| ||||||| || ||| |||| |||| Sbjct: 853 tccttcacaagaggattcaagcttggcaca 824
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 109 bits (55), Expect = 7e-21 Identities = 67/71 (94%) Strand = Plus / Plus Query: 95 ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154 |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 112409 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 112468 Query: 155 actgatcgact 165 ||||||||||| Sbjct: 112469 actgatcgact 112479 Score = 93.7 bits (47), Expect = 4e-16 Identities = 85/98 (86%) Strand = Plus / Plus Query: 164 cttctccaacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttctg 223 ||||||||||| ||| || |||||||||| ||||||||| || || ||||||||||||| Sbjct: 112568 cttctccaacatgcgttgaagcctctcagattccttcttagtgtattcagagcccttctc 112627 Query: 224 caatatcttctttgcaacgttcacatanatctttccgt 261 || |||||||||||| ||||||||| |||||||||| Sbjct: 112628 catgatcttctttgcagagttcacatagatctttccgt 112665
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 109 bits (55), Expect = 7e-21 Identities = 67/71 (94%) Strand = Plus / Plus Query: 95 ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154 |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 3234692 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 3234751 Query: 155 actgatcgact 165 ||||||||||| Sbjct: 3234752 actgatcgact 3234762 Score = 93.7 bits (47), Expect = 4e-16 Identities = 85/98 (86%) Strand = Plus / Plus Query: 164 cttctccaacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttctg 223 ||||||||||| ||| || |||||||||| ||||||||| || || ||||||||||||| Sbjct: 3234851 cttctccaacatgcgttgaagcctctcagattccttcttagtgtattcagagcccttctc 3234910 Query: 224 caatatcttctttgcaacgttcacatanatctttccgt 261 || |||||||||||| ||||||||| |||||||||| Sbjct: 3234911 catgatcttctttgcagagttcacatagatctttccgt 3234948
>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05, complete sequence Length = 167317 Score = 109 bits (55), Expect = 7e-21 Identities = 67/71 (94%) Strand = Plus / Plus Query: 95 ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154 |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 28516 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 28575 Query: 155 actgatcgact 165 ||||||||||| Sbjct: 28576 actgatcgact 28586 Score = 93.7 bits (47), Expect = 4e-16 Identities = 85/98 (86%) Strand = Plus / Plus Query: 164 cttctccaacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttctg 223 ||||||||||| ||| || |||||||||| ||||||||| || || ||||||||||||| Sbjct: 28675 cttctccaacatgcgttgaagcctctcagattccttcttagtgtattcagagcccttctc 28734 Query: 224 caatatcttctttgcaacgttcacatanatctttccgt 261 || |||||||||||| ||||||||| |||||||||| Sbjct: 28735 catgatcttctttgcagagttcacatagatctttccgt 28772
>ref|NM_183927.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1116 Score = 83.8 bits (42), Expect = 4e-13 Identities = 87/102 (85%) Strand = Plus / Minus Query: 110 tgaaagaatgttcttcttgatggcgaattcatcggctttggaaggactgatcgacttctc 169 |||||| | ||||||||||||| |||||||||||| || || || ||||| |||||||| Sbjct: 1101 tgaaaggacgttcttcttgatgatgaattcatcggcctttgatgggctgatggacttctc 1042 Query: 170 caacaagcgatggagcctctcagtttccttctttgtatagtc 211 ||||| ||| | |||||||| ||||||||||| |||||||| Sbjct: 1041 caacatgcgttcaagcctctctgtttccttcttggtatagtc 1000 Score = 79.8 bits (40), Expect = 6e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 254 ctttccgtgcttgacagcaggaccactgagctttgcagcctcctcttcaattttagagag 313 |||||| ||||| |||||| |||||||||||| || |||||||||| || || ||||| Sbjct: 957 ctttccatgctttgcagcagaaccactgagcttcacaacctcctcttccatattggagag 898 Query: 314 gatttccttccgcttgtcat 333 |||||||||||||||||||| Sbjct: 897 gatttccttccgcttgtcat 878
>dbj|AK066111.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050J24, full insert sequence Length = 1549 Score = 83.8 bits (42), Expect = 4e-13 Identities = 87/102 (85%) Strand = Plus / Minus Query: 110 tgaaagaatgttcttcttgatggcgaattcatcggctttggaaggactgatcgacttctc 169 |||||| | ||||||||||||| |||||||||||| || || || ||||| |||||||| Sbjct: 1214 tgaaaggacgttcttcttgatgatgaattcatcggcctttgatgggctgatggacttctc 1155 Query: 170 caacaagcgatggagcctctcagtttccttctttgtatagtc 211 ||||| ||| | |||||||| ||||||||||| |||||||| Sbjct: 1154 caacatgcgttcaagcctctctgtttccttcttggtatagtc 1113 Score = 79.8 bits (40), Expect = 6e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 254 ctttccgtgcttgacagcaggaccactgagctttgcagcctcctcttcaattttagagag 313 |||||| ||||| |||||| |||||||||||| || |||||||||| || || ||||| Sbjct: 1070 ctttccatgctttgcagcagaaccactgagcttcacaacctcctcttccatattggagag 1011 Query: 314 gatttccttccgcttgtcat 333 |||||||||||||||||||| Sbjct: 1010 gatttccttccgcttgtcat 991
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 75.8 bits (38), Expect = 9e-11 Identities = 59/66 (89%) Strand = Plus / Minus Query: 268 cagcaggaccactgagctttgcagcctcctcttcaattttagagaggatttccttccgct 327 |||||| |||||||||||| || |||||||||| || || ||||||||||||||||||| Sbjct: 13339689 cagcagaaccactgagcttcacaacctcctcttccatattggagaggatttccttccgct 13339630 Query: 328 tgtcat 333 |||||| Sbjct: 13339629 tgtcat 13339624 Score = 48.1 bits (24), Expect = 0.021 Identities = 42/48 (87%) Strand = Plus / Minus Query: 164 cttctccaacaagcgatggagcctctcagtttccttctttgtatagtc 211 ||||||||||| ||| | |||||||| ||||||||||| |||||||| Sbjct: 13339884 cttctccaacatgcgttcaagcctctctgtttccttcttggtatagtc 13339837 Score = 40.1 bits (20), Expect = 5.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 110 tgaaagaatgttcttcttgatggcgaattcatcggc 145 |||||| | ||||||||||||| |||||||||||| Sbjct: 13340044 tgaaaggacgttcttcttgatgatgaattcatcggc 13340009
>dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088D01 Length = 146144 Score = 75.8 bits (38), Expect = 9e-11 Identities = 59/66 (89%) Strand = Plus / Minus Query: 268 cagcaggaccactgagctttgcagcctcctcttcaattttagagaggatttccttccgct 327 |||||| |||||||||||| || |||||||||| || || ||||||||||||||||||| Sbjct: 80047 cagcagaaccactgagcttcacaacctcctcttccatattggagaggatttccttccgct 79988 Query: 328 tgtcat 333 |||||| Sbjct: 79987 tgtcat 79982 Score = 48.1 bits (24), Expect = 0.021 Identities = 42/48 (87%) Strand = Plus / Minus Query: 164 cttctccaacaagcgatggagcctctcagtttccttctttgtatagtc 211 ||||||||||| ||| | |||||||| ||||||||||| |||||||| Sbjct: 80242 cttctccaacatgcgttcaagcctctctgtttccttcttggtatagtc 80195 Score = 40.1 bits (20), Expect = 5.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 110 tgaaagaatgttcttcttgatggcgaattcatcggc 145 |||||| | ||||||||||||| |||||||||||| Sbjct: 80402 tgaaaggacgttcttcttgatgatgaattcatcggc 80367
>gb|AY739288.1| Zea mays protein disulfide isomerase (PDIL2-1) mRNA, complete cds Length = 1447 Score = 63.9 bits (32), Expect = 3e-07 Identities = 181/231 (78%) Strand = Plus / Minus Query: 102 gagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaaggactgatc 161 ||||||| ||||||| ||||||||||||| || || ||||| ||||| || ||||| Sbjct: 1117 gagaaagtcgaaagaacgttcttcttgatgataaactcgtcggccttggaggggctgatg 1058 Query: 162 gacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttc 221 ||||||||||| | ||||| ||||||| |||||||||| ||||| || ||| ||| Sbjct: 1057 gacttctccaagatgcgatcaagcctcttggtttccttctcagtatactcgttgcctttc 998 Query: 222 tgcaatatcttctttgcaacgttcacatanatctttccgtgcttgacagcaggaccactg 281 | | ||||||||||| | | | ||||| | |||||| ||| | |||||| ||||||| Sbjct: 997 tctagaatcttctttgcgatggttacatagacctttccatgccttgcagcagaaccactg 938 Query: 282 agctttgcagcctcctcttcaattttagagaggatttccttccgcttgtca 332 ||||| | |||||||| || || | ||||||| |||||| ||||||||| Sbjct: 937 agcttatctgcctcctcctccatactggagaggacttcctttcgcttgtca 887
>gb|AC142293.2| Homo sapiens fosmid clone XXFOS-8806F2 from 4, complete sequence Length = 32823 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 ctgcaatatcttctttgcaac 241 ||||||||||||||||||||| Sbjct: 18966 ctgcaatatcttctttgcaac 18946
>ref|XM_477491.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2010 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 aatgttcttcttgatggcga 135 |||||||||||||||||||| Sbjct: 1435 aatgttcttcttgatggcga 1454
>gb|AC121116.7| Mus musculus chromosome 8, clone RP23-267D22, complete sequence Length = 200891 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 tcagtttccttctttgtata 208 |||||||||||||||||||| Sbjct: 198845 tcagtttccttctttgtata 198864
>gb|AC122936.3| Mus musculus BAC clone RP23-20H6 from 5, complete sequence Length = 234064 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tcagtttccttctttgtata 208 |||||||||||||||||||| Sbjct: 96200 tcagtttccttctttgtata 96181
>gb|AC005236.4| Homo sapiens BAC clone RP11-479C13 from 7, complete sequence Length = 87593 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 cgatggagcctctcagtttc 196 |||||||||||||||||||| Sbjct: 34205 cgatggagcctctcagtttc 34186
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ttctttgcaacgttcacata 250 |||||||||||||||||||| Sbjct: 19319 ttctttgcaacgttcacata 19338
>gb|AC108436.5| Mus musculus chromosome 8, clone RP23-230G11, complete sequence Length = 185534 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tcagtttccttctttgtata 208 |||||||||||||||||||| Sbjct: 182094 tcagtttccttctttgtata 182075
>gb|AC173999.3| Pan troglodytes BAC clone CH251-530E14 from chromosome 7, complete sequence Length = 166256 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 cgatggagcctctcagtttc 196 |||||||||||||||||||| Sbjct: 117527 cgatggagcctctcagtttc 117546
>gb|AC079920.6| Homo sapiens BAC clone RP11-325K1 from 7, complete sequence Length = 130284 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 cgatggagcctctcagtttc 196 |||||||||||||||||||| Sbjct: 79691 cgatggagcctctcagtttc 79710
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 aatgttcttcttgatggcga 135 |||||||||||||||||||| Sbjct: 10843881 aatgttcttcttgatggcga 10843862
>gb|AC007546.6| Homo sapiens 12 BAC RP11-946P6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168396 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ctctcagtttccttctttgt 205 |||||||||||||||||||| Sbjct: 99531 ctctcagtttccttctttgt 99550
>dbj|AP005100.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0018O23 Length = 142143 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 aatgttcttcttgatggcga 135 |||||||||||||||||||| Sbjct: 54640 aatgttcttcttgatggcga 54621
>dbj|AP005766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0028O21 Length = 134543 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 aatgttcttcttgatggcga 135 |||||||||||||||||||| Sbjct: 20256 aatgttcttcttgatggcga 20237
>gb|AC161507.2| Mus musculus chromosome 5, clone RP23-76L18, complete sequence Length = 262831 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 tcagtttccttctttgtata 208 |||||||||||||||||||| Sbjct: 26532 tcagtttccttctttgtata 26551
>emb|AL844882.9| Mouse DNA sequence from clone RP23-360H15 on chromosome 2, complete sequence Length = 167978 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 cattaagaggagaaagctga 112 |||||||||||||||||||| Sbjct: 114715 cattaagaggagaaagctga 114734 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,266,443 Number of Sequences: 3902068 Number of extensions: 3266443 Number of successful extensions: 68133 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68048 Number of HSP's gapped (non-prelim): 83 length of query: 380 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 358 effective length of database: 17,147,199,772 effective search space: 6138697518376 effective search space used: 6138697518376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)