ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5i01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_185280.1| Oryza sativa (japonica cultivar-group), predic... 238 1e-59
2dbj|AK103944.1| Oryza sativa (japonica cultivar-group) cDNA clon... 238 1e-59
3dbj|AK098931.1| Oryza sativa (japonica cultivar-group) cDNA clon... 238 1e-59
4dbj|AK062024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 238 1e-59
5dbj|AK099341.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 4e-53
6gb|BT016699.1| Zea mays clone Contig532 mRNA sequence 208 1e-50
7gb|AY739289.1| Zea mays protein disulfide isomerase (PDIL2-2) mR... 208 1e-50
8gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome... 109 7e-21
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
10gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome... 109 7e-21
11ref|NM_183927.1| Oryza sativa (japonica cultivar-group), predic... 84 4e-13
12dbj|AK066111.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 76 9e-11
14dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic D... 76 9e-11
15gb|AY739288.1| Zea mays protein disulfide isomerase (PDIL2-1) mR... 64 3e-07
16gb|AC142293.2| Homo sapiens fosmid clone XXFOS-8806F2 from 4, co... 42 1.3
17ref|XM_477491.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.1
18gb|AC121116.7| Mus musculus chromosome 8, clone RP23-267D22, com... 40 5.1
19gb|AC122936.3| Mus musculus BAC clone RP23-20H6 from 5, complete... 40 5.1
20gb|AC005236.4| Homo sapiens BAC clone RP11-479C13 from 7, comple... 40 5.1
21gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete se... 40 5.1
22gb|AC108436.5| Mus musculus chromosome 8, clone RP23-230G11, com... 40 5.1
23gb|AC173999.3| Pan troglodytes BAC clone CH251-530E14 from chrom... 40 5.1
24gb|AC079920.6| Homo sapiens BAC clone RP11-325K1 from 7, complet... 40 5.1
25dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
26gb|AC007546.6| Homo sapiens 12 BAC RP11-946P6 (Roswell Park Canc... 40 5.1
27dbj|AP005100.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
28dbj|AP005766.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
29gb|AC161507.2| Mus musculus chromosome 5, clone RP23-76L18, comp... 40 5.1
30emb|AL844882.9| Mouse DNA sequence from clone RP23-360H15 on chr... 40 5.1

>ref|NM_185280.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1101

 Score =  238 bits (120), Expect = 1e-59
 Identities = 209/239 (87%)
 Strand = Plus / Minus

                                                                        
Query: 95   ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154
            ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1101 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 1042

                                                                        
Query: 155  actgatcgacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcaga 214
            |||||||||||||||||||| ||| || |||||||||| ||||||||| || || |||||
Sbjct: 1041 actgatcgacttctccaacatgcgttgaagcctctcagattccttcttagtgtattcaga 982

                                                                        
Query: 215  gcccttctgcaatatcttctttgcaacgttcacatanatctttccgtgcttgacagcagg 274
            |||||||| ||  ||||||||||||  ||||||||| |||||||||| |||| |||||||
Sbjct: 981  gcccttctccatgatcttctttgcagagttcacatagatctttccgtacttggcagcagg 922

                                                                       
Query: 275  accactgagctttgcagcctcctcttcaattttagagaggatttccttccgcttgtcat 333
             ||| ||||||| ||| | |||||||| ||||| ||||||  ||| |||||||| ||||
Sbjct: 921  gccagtgagcttcgcaacatcctcttccattttggagagggcttctttccgcttatcat 863



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>dbj|AK103944.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A01, full
            insert sequence
          Length = 1431

 Score =  238 bits (120), Expect = 1e-59
 Identities = 209/239 (87%)
 Strand = Plus / Minus

                                                                        
Query: 95   ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154
            ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1115 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 1056

                                                                        
Query: 155  actgatcgacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcaga 214
            |||||||||||||||||||| ||| || |||||||||| ||||||||| || || |||||
Sbjct: 1055 actgatcgacttctccaacatgcgttgaagcctctcagattccttcttagtgtattcaga 996

                                                                        
Query: 215  gcccttctgcaatatcttctttgcaacgttcacatanatctttccgtgcttgacagcagg 274
            |||||||| ||  ||||||||||||  ||||||||| |||||||||| |||| |||||||
Sbjct: 995  gcccttctccatgatcttctttgcagagttcacatagatctttccgtacttggcagcagg 936

                                                                       
Query: 275  accactgagctttgcagcctcctcttcaattttagagaggatttccttccgcttgtcat 333
             ||| ||||||| ||| | |||||||| ||||| ||||||  ||| |||||||| ||||
Sbjct: 935  gccagtgagcttcgcaacatcctcttccattttggagagggcttctttccgcttatcat 877



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>dbj|AK098931.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023F18, full
            insert sequence
          Length = 1522

 Score =  238 bits (120), Expect = 1e-59
 Identities = 209/239 (87%)
 Strand = Plus / Minus

                                                                        
Query: 95   ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154
            ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1156 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 1097

                                                                        
Query: 155  actgatcgacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcaga 214
            |||||||||||||||||||| ||| || |||||||||| ||||||||| || || |||||
Sbjct: 1096 actgatcgacttctccaacatgcgttgaagcctctcagattccttcttagtgtattcaga 1037

                                                                        
Query: 215  gcccttctgcaatatcttctttgcaacgttcacatanatctttccgtgcttgacagcagg 274
            |||||||| ||  ||||||||||||  ||||||||| |||||||||| |||| |||||||
Sbjct: 1036 gcccttctccatgatcttctttgcagagttcacatagatctttccgtacttggcagcagg 977

                                                                       
Query: 275  accactgagctttgcagcctcctcttcaattttagagaggatttccttccgcttgtcat 333
             ||| ||||||| ||| | |||||||| ||||| ||||||  ||| |||||||| ||||
Sbjct: 976  gccagtgagcttcgcaacatcctcttccattttggagagggcttctttccgcttatcat 918



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>dbj|AK062024.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-G03, full
            insert sequence
          Length = 1544

 Score =  238 bits (120), Expect = 1e-59
 Identities = 209/239 (87%)
 Strand = Plus / Minus

                                                                        
Query: 95   ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154
            ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1158 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 1099

                                                                        
Query: 155  actgatcgacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcaga 214
            |||||||||||||||||||| ||| || |||||||||| ||||||||| || || |||||
Sbjct: 1098 actgatcgacttctccaacatgcgttgaagcctctcagattccttcttagtgtattcaga 1039

                                                                        
Query: 215  gcccttctgcaatatcttctttgcaacgttcacatanatctttccgtgcttgacagcagg 274
            |||||||| ||  ||||||||||||  ||||||||| |||||||||| |||| |||||||
Sbjct: 1038 gcccttctccatgatcttctttgcagagttcacatagatctttccgtacttggcagcagg 979

                                                                       
Query: 275  accactgagctttgcagcctcctcttcaattttagagaggatttccttccgcttgtcat 333
             ||| ||||||| ||| | |||||||| ||||| ||||||  ||| |||||||| ||||
Sbjct: 978  gccagtgagcttcgcaacatcctcttccattttggagagggcttctttccgcttatcat 920



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>dbj|AK099341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028P21, full
            insert sequence
          Length = 1528

 Score =  216 bits (109), Expect = 4e-53
 Identities = 209/242 (86%), Gaps = 3/242 (1%)
 Strand = Plus / Minus

                                                                        
Query: 95   ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154
            ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1162 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 1103

                                                                        
Query: 155  actgatcgacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcaga 214
            |||||||||||||||||||| ||| || |||||||||| ||||||||| || || |||||
Sbjct: 1102 actgatcgacttctccaacatgcgttgaagcctctcagattccttcttagtgtattcaga 1043

                                                                        
Query: 215  gcccttctgcaatatcttctttgcaacgttcacatanatctttccgtgc---ttgacagc 271
            |||||||| ||  ||||||||||||  ||||||||| |||||||||| |   ||| ||||
Sbjct: 1042 gcccttctccatgatcttctttgcagagttcacatagatctttccgtacctgttggcagc 983

                                                                        
Query: 272  aggaccactgagctttgcagcctcctcttcaattttagagaggatttccttccgcttgtc 331
            ||| ||| ||||||| ||| | |||||||| ||||| ||||||  ||| |||||||| ||
Sbjct: 982  agggccagtgagcttcgcaacatcctcttccattttggagagggcttctttccgcttatc 923

              
Query: 332  at 333
            ||
Sbjct: 922  at 921



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>gb|BT016699.1| Zea mays clone Contig532 mRNA sequence
          Length = 1425

 Score =  208 bits (105), Expect = 1e-50
 Identities = 228/270 (84%)
 Strand = Plus / Minus

                                                                        
Query: 111  gaaagaatgttcttcttgatggcgaattcatcggctttggaaggactgatcgacttctcc 170
            ||||||||||||||||| | |  ||||||||| ||||||||||||||||| |||||||||
Sbjct: 1088 gaaagaatgttcttcttaacgatgaattcatcagctttggaaggactgattgacttctcc 1029

                                                                        
Query: 171  aacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttctgcaatatc 230
            | || ||| || ||||||||||| |||||||| || |||||||||||||| |  |  |||
Sbjct: 1028 agcatgcggtgaagcctctcagtctccttcttagtgtagtcagagcccttgtctatgatc 969

                                                                        
Query: 231  ttctttgcaacgttcacatanatctttccgtgcttgacagcaggaccactgagctttgca 290
            ||||||||| |  ||||||| |||||||| |||||| | |||| ||| |||||||| |||
Sbjct: 968  ttctttgcagctgtcacatatatctttccatgcttggctgcagaaccgctgagcttagca 909

                                                                        
Query: 291  gcctcctcttcaattttagagaggatttccttccgcttgtcatcagcggcactgnggaaa 350
             | |||||||| ||||||||||||| ||||||||||||||||||||| ||| || | || 
Sbjct: 908  acatcctcttctattttagagaggacttccttccgcttgtcatcagcagcattgagaaac 849

                                          
Query: 351  tccttgacaagagcatncaaacttgccaca 380
            ||||| ||||||| || ||| |||| ||||
Sbjct: 848  tccttcacaagaggattcaagcttggcaca 819



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>gb|AY739289.1| Zea mays protein disulfide isomerase (PDIL2-2) mRNA, complete cds
          Length = 1408

 Score =  208 bits (105), Expect = 1e-50
 Identities = 228/270 (84%)
 Strand = Plus / Minus

                                                                        
Query: 111  gaaagaatgttcttcttgatggcgaattcatcggctttggaaggactgatcgacttctcc 170
            ||||||||||||||||| | |  ||||||||| ||||||||||||||||| |||||||||
Sbjct: 1093 gaaagaatgttcttcttaacgatgaattcatcagctttggaaggactgattgacttctcc 1034

                                                                        
Query: 171  aacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttctgcaatatc 230
            | || ||| || ||||||||||| |||||||| || |||||||||||||| |  |  |||
Sbjct: 1033 agcatgcggtgaagcctctcagtctccttcttagtgtagtcagagcccttgtctatgatc 974

                                                                        
Query: 231  ttctttgcaacgttcacatanatctttccgtgcttgacagcaggaccactgagctttgca 290
            ||||||||| |  ||||||| |||||||| |||||| | |||| ||| |||||||| |||
Sbjct: 973  ttctttgcagctgtcacatatatctttccatgcttggctgcagaaccgctgagcttagca 914

                                                                        
Query: 291  gcctcctcttcaattttagagaggatttccttccgcttgtcatcagcggcactgnggaaa 350
             | |||||||| ||||||||||||| ||||||||||||||||||||| ||| || | || 
Sbjct: 913  acatcctcttctattttagagaggacttccttccgcttgtcatcagcagcattgagaaac 854

                                          
Query: 351  tccttgacaagagcatncaaacttgccaca 380
            ||||| ||||||| || ||| |||| ||||
Sbjct: 853  tccttcacaagaggattcaagcttggcaca 824



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>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05,
              complete sequence
          Length = 145044

 Score =  109 bits (55), Expect = 7e-21
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                          
Query: 95     ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154
              ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 112409 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 112468

                         
Query: 155    actgatcgact 165
              |||||||||||
Sbjct: 112469 actgatcgact 112479



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                          
Query: 164    cttctccaacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttctg 223
              ||||||||||| ||| || |||||||||| ||||||||| || || ||||||||||||| 
Sbjct: 112568 cttctccaacatgcgttgaagcctctcagattccttcttagtgtattcagagcccttctc 112627

                                                    
Query: 224    caatatcttctttgcaacgttcacatanatctttccgt 261
              ||  ||||||||||||  ||||||||| ||||||||||
Sbjct: 112628 catgatcttctttgcagagttcacatagatctttccgt 112665



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  109 bits (55), Expect = 7e-21
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                           
Query: 95      ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154
               ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 3234692 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 3234751

                          
Query: 155     actgatcgact 165
               |||||||||||
Sbjct: 3234752 actgatcgact 3234762



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                           
Query: 164     cttctccaacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttctg 223
               ||||||||||| ||| || |||||||||| ||||||||| || || ||||||||||||| 
Sbjct: 3234851 cttctccaacatgcgttgaagcctctcagattccttcttagtgtattcagagcccttctc 3234910

                                                     
Query: 224     caatatcttctttgcaacgttcacatanatctttccgt 261
               ||  ||||||||||||  ||||||||| ||||||||||
Sbjct: 3234911 catgatcttctttgcagagttcacatagatctttccgt 3234948



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>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05,
             complete sequence
          Length = 167317

 Score =  109 bits (55), Expect = 7e-21
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                         
Query: 95    ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 154
             ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 28516 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 28575

                        
Query: 155   actgatcgact 165
             |||||||||||
Sbjct: 28576 actgatcgact 28586



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                         
Query: 164   cttctccaacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttctg 223
             ||||||||||| ||| || |||||||||| ||||||||| || || ||||||||||||| 
Sbjct: 28675 cttctccaacatgcgttgaagcctctcagattccttcttagtgtattcagagcccttctc 28734

                                                   
Query: 224   caatatcttctttgcaacgttcacatanatctttccgt 261
             ||  ||||||||||||  ||||||||| ||||||||||
Sbjct: 28735 catgatcttctttgcagagttcacatagatctttccgt 28772



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>ref|NM_183927.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1116

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 87/102 (85%)
 Strand = Plus / Minus

                                                                        
Query: 110  tgaaagaatgttcttcttgatggcgaattcatcggctttggaaggactgatcgacttctc 169
            |||||| | |||||||||||||  |||||||||||| || || || ||||| ||||||||
Sbjct: 1101 tgaaaggacgttcttcttgatgatgaattcatcggcctttgatgggctgatggacttctc 1042

                                                      
Query: 170  caacaagcgatggagcctctcagtttccttctttgtatagtc 211
            ||||| ||| |  |||||||| ||||||||||| ||||||||
Sbjct: 1041 caacatgcgttcaagcctctctgtttccttcttggtatagtc 1000



 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                       
Query: 254 ctttccgtgcttgacagcaggaccactgagctttgcagcctcctcttcaattttagagag 313
           |||||| |||||  |||||| ||||||||||||  || |||||||||| || || |||||
Sbjct: 957 ctttccatgctttgcagcagaaccactgagcttcacaacctcctcttccatattggagag 898

                               
Query: 314 gatttccttccgcttgtcat 333
           ||||||||||||||||||||
Sbjct: 897 gatttccttccgcttgtcat 878



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>dbj|AK066111.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050J24, full
            insert sequence
          Length = 1549

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 87/102 (85%)
 Strand = Plus / Minus

                                                                        
Query: 110  tgaaagaatgttcttcttgatggcgaattcatcggctttggaaggactgatcgacttctc 169
            |||||| | |||||||||||||  |||||||||||| || || || ||||| ||||||||
Sbjct: 1214 tgaaaggacgttcttcttgatgatgaattcatcggcctttgatgggctgatggacttctc 1155

                                                      
Query: 170  caacaagcgatggagcctctcagtttccttctttgtatagtc 211
            ||||| ||| |  |||||||| ||||||||||| ||||||||
Sbjct: 1154 caacatgcgttcaagcctctctgtttccttcttggtatagtc 1113



 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                        
Query: 254  ctttccgtgcttgacagcaggaccactgagctttgcagcctcctcttcaattttagagag 313
            |||||| |||||  |||||| ||||||||||||  || |||||||||| || || |||||
Sbjct: 1070 ctttccatgctttgcagcagaaccactgagcttcacaacctcctcttccatattggagag 1011

                                
Query: 314  gatttccttccgcttgtcat 333
            ||||||||||||||||||||
Sbjct: 1010 gatttccttccgcttgtcat 991



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                            
Query: 268      cagcaggaccactgagctttgcagcctcctcttcaattttagagaggatttccttccgct 327
                |||||| ||||||||||||  || |||||||||| || || |||||||||||||||||||
Sbjct: 13339689 cagcagaaccactgagcttcacaacctcctcttccatattggagaggatttccttccgct 13339630

                      
Query: 328      tgtcat 333
                ||||||
Sbjct: 13339629 tgtcat 13339624



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 164      cttctccaacaagcgatggagcctctcagtttccttctttgtatagtc 211
                ||||||||||| ||| |  |||||||| ||||||||||| ||||||||
Sbjct: 13339884 cttctccaacatgcgttcaagcctctctgtttccttcttggtatagtc 13339837



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 110      tgaaagaatgttcttcttgatggcgaattcatcggc 145
                |||||| | |||||||||||||  ||||||||||||
Sbjct: 13340044 tgaaaggacgttcttcttgatgatgaattcatcggc 13340009



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>dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1088D01
          Length = 146144

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                         
Query: 268   cagcaggaccactgagctttgcagcctcctcttcaattttagagaggatttccttccgct 327
             |||||| ||||||||||||  || |||||||||| || || |||||||||||||||||||
Sbjct: 80047 cagcagaaccactgagcttcacaacctcctcttccatattggagaggatttccttccgct 79988

                   
Query: 328   tgtcat 333
             ||||||
Sbjct: 79987 tgtcat 79982



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 164   cttctccaacaagcgatggagcctctcagtttccttctttgtatagtc 211
             ||||||||||| ||| |  |||||||| ||||||||||| ||||||||
Sbjct: 80242 cttctccaacatgcgttcaagcctctctgtttccttcttggtatagtc 80195



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 110   tgaaagaatgttcttcttgatggcgaattcatcggc 145
             |||||| | |||||||||||||  ||||||||||||
Sbjct: 80402 tgaaaggacgttcttcttgatgatgaattcatcggc 80367



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>gb|AY739288.1| Zea mays protein disulfide isomerase (PDIL2-1) mRNA, complete cds
          Length = 1447

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 181/231 (78%)
 Strand = Plus / Minus

                                                                        
Query: 102  gagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaaggactgatc 161
            |||||||  ||||||| |||||||||||||   || || ||||| ||||| || ||||| 
Sbjct: 1117 gagaaagtcgaaagaacgttcttcttgatgataaactcgtcggccttggaggggctgatg 1058

                                                                        
Query: 162  gacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttc 221
            ||||||||||| | |||||  |||||||  ||||||||||  ||||| ||   ||| |||
Sbjct: 1057 gacttctccaagatgcgatcaagcctcttggtttccttctcagtatactcgttgcctttc 998

                                                                        
Query: 222  tgcaatatcttctttgcaacgttcacatanatctttccgtgcttgacagcaggaccactg 281
            |  |  ||||||||||| | | | ||||| | |||||| ||| |  |||||| |||||||
Sbjct: 997  tctagaatcttctttgcgatggttacatagacctttccatgccttgcagcagaaccactg 938

                                                               
Query: 282  agctttgcagcctcctcttcaattttagagaggatttccttccgcttgtca 332
            |||||  | |||||||| || ||  | ||||||| |||||| |||||||||
Sbjct: 937  agcttatctgcctcctcctccatactggagaggacttcctttcgcttgtca 887



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>gb|AC142293.2| Homo sapiens fosmid clone XXFOS-8806F2 from 4, complete sequence
          Length = 32823

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 221   ctgcaatatcttctttgcaac 241
             |||||||||||||||||||||
Sbjct: 18966 ctgcaatatcttctttgcaac 18946



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>ref|XM_477491.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2010

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 116  aatgttcttcttgatggcga 135
            ||||||||||||||||||||
Sbjct: 1435 aatgttcttcttgatggcga 1454



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>gb|AC121116.7| Mus musculus chromosome 8, clone RP23-267D22, complete sequence
          Length = 200891

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    tcagtttccttctttgtata 208
              ||||||||||||||||||||
Sbjct: 198845 tcagtttccttctttgtata 198864



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>gb|AC122936.3| Mus musculus BAC clone RP23-20H6 from 5, complete sequence
          Length = 234064

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   tcagtttccttctttgtata 208
             ||||||||||||||||||||
Sbjct: 96200 tcagtttccttctttgtata 96181



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>gb|AC005236.4| Homo sapiens BAC clone RP11-479C13 from 7, complete sequence
          Length = 87593

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   cgatggagcctctcagtttc 196
             ||||||||||||||||||||
Sbjct: 34205 cgatggagcctctcagtttc 34186



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>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence
          Length = 105218

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   ttctttgcaacgttcacata 250
             ||||||||||||||||||||
Sbjct: 19319 ttctttgcaacgttcacata 19338



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>gb|AC108436.5| Mus musculus chromosome 8, clone RP23-230G11, complete sequence
          Length = 185534

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    tcagtttccttctttgtata 208
              ||||||||||||||||||||
Sbjct: 182094 tcagtttccttctttgtata 182075



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>gb|AC173999.3| Pan troglodytes BAC clone CH251-530E14 from chromosome 7, complete
              sequence
          Length = 166256

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    cgatggagcctctcagtttc 196
              ||||||||||||||||||||
Sbjct: 117527 cgatggagcctctcagtttc 117546



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>gb|AC079920.6| Homo sapiens BAC clone RP11-325K1 from 7, complete sequence
          Length = 130284

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   cgatggagcctctcagtttc 196
             ||||||||||||||||||||
Sbjct: 79691 cgatggagcctctcagtttc 79710



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 116      aatgttcttcttgatggcga 135
                ||||||||||||||||||||
Sbjct: 10843881 aatgttcttcttgatggcga 10843862



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>gb|AC007546.6| Homo sapiens 12 BAC RP11-946P6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168396

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   ctctcagtttccttctttgt 205
             ||||||||||||||||||||
Sbjct: 99531 ctctcagtttccttctttgt 99550



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>dbj|AP005100.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0018O23
          Length = 142143

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   aatgttcttcttgatggcga 135
             ||||||||||||||||||||
Sbjct: 54640 aatgttcttcttgatggcga 54621



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>dbj|AP005766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0028O21
          Length = 134543

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   aatgttcttcttgatggcga 135
             ||||||||||||||||||||
Sbjct: 20256 aatgttcttcttgatggcga 20237



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>gb|AC161507.2| Mus musculus chromosome 5, clone RP23-76L18, complete sequence
          Length = 262831

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   tcagtttccttctttgtata 208
             ||||||||||||||||||||
Sbjct: 26532 tcagtttccttctttgtata 26551



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>emb|AL844882.9| Mouse DNA sequence from clone RP23-360H15 on chromosome 2, complete
              sequence
          Length = 167978

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     cattaagaggagaaagctga 112
              ||||||||||||||||||||
Sbjct: 114715 cattaagaggagaaagctga 114734


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,266,443
Number of Sequences: 3902068
Number of extensions: 3266443
Number of successful extensions: 68133
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68048
Number of HSP's gapped (non-prelim): 83
length of query: 380
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 358
effective length of database: 17,147,199,772
effective search space: 6138697518376
effective search space used: 6138697518376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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