ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5h22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479557.1| Oryza sativa (japonica cultivar-group), mRNA 202 1e-48
2dbj|AK103213.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 1e-48
3gb|AY111892.1| Zea mays CL34424_1 mRNA sequence 184 3e-43
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 151 4e-33
5dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic D... 151 4e-33
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 129 1e-26
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
8gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome... 129 1e-26
9dbj|AK066736.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 1e-26
10gb|AY110407.1| Zea mays CL40803_1 mRNA sequence 103 8e-19
11gb|AC132215.1| Genomic sequence for Oryza sativa, Nipponbare str... 92 3e-15
12ref|XM_481635.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.003
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.003
14dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.003
15dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.003
16dbj|AK073839.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.003
17gb|AY110340.1| Zea mays CL35108_1 mRNA sequence 48 0.040
18gb|AC008341.3| Drosophila melanogaster clone BACR15P11, complete... 44 0.63
19emb|AL137011.9| Human DNA sequence from clone RP4-662A9 on chrom... 44 0.63
20gb|AC007086.10|AC007086 Drosophila melanogaster, chromosome 2R, ... 44 0.63
21gb|AE003833.4| Drosophila melanogaster chromosome 2R, section 17... 44 0.63
22emb|AL935127.9| Mouse DNA sequence from clone RP23-431O5 on chro... 44 0.63
23emb|AL162274.17| Human DNA sequence from clone RP11-45A17 on chr... 42 2.5
24emb|AL109837.22|HS1128N12 Human DNA sequence from clone RP5-1128... 42 2.5
25emb|AL929061.31| Mouse DNA sequence from clone RP23-402A18 on ch... 42 2.5
26gb|AY886764.1| Homo sapiens BCL2/adenovirus E1B 19kDa interactin... 42 2.5
27emb|AL365333.13| Mouse DNA sequence from clone RP21-490L20 on ch... 42 2.5
28ref|XM_474034.1| Oryza sativa (japonica cultivar-group), predic... 40 9.8
29gb|AC145365.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.8
30gb|AC145324.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.8
31gb|AC100727.10| Mus musculus chromosome 1, clone RP24-278K16, co... 40 9.8
32emb|Z35599.1|CEF25F2 Caenorhabditis elegans Cosmid F25F2, comple... 40 9.8
33emb|AL121958.6|HSDJ71H19 Human DNA sequence from clone RP1-71H19... 40 9.8
34emb|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7, chrom... 40 9.8
35emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4,... 40 9.8
36emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4,... 40 9.8
37gb|AC092723.3| Homo sapiens chromosome 16 clone RP11-542M13, com... 40 9.8
38gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold 40 9.8
39dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
40dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
41gb|AC013727.7| Homo sapiens BAC clone RP11-451G1 from 2, complet... 40 9.8
42dbj|AK067760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.8
43emb|AL512546.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 9.8
44gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.8
45gb|AC135634.4| Mus musculus BAC clone RP23-121I20 from 9, comple... 40 9.8
46emb|AL354926.17| Human DNA sequence from clone RP1-216J23 on chr... 40 9.8 
>ref|XM_479557.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2768

 Score =  202 bits (102), Expect = 1e-48
 Identities = 297/362 (82%)
 Strand = Plus / Minus

                                                                        
Query: 332  ttgcactcgtccatgaatcgatcttctcgggtgagaaacctcctccagtacttcttgtag 391
            |||||||| |||||||||  ||| ||||| || || |||||| |||||||  || |||||
Sbjct: 2087 ttgcactcatccatgaatttatcgtctcgagttaggaacctcttccagtatctcctgtag 2028

                                                                        
Query: 392  tccggtatgcctaactcgagccaaggcttcatattgccattgtagtgcaatgctgcagag 451
               ||||| ||||| || |||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 2027 cttggtatacctaattcaagccaaggtttcatattgccattgtagtgcaatgctgcagaa 1968

                                                                        
Query: 452  ctctgtgcaacctccggatcgattccatagtcatatccaagtccagacagagtcgacctc 511
            ||| ||||||| ||   ||| ||| |||| ||||||||||||||||| ||| || |||||
Sbjct: 1967 ctccgtgcaacgtcttcatcaattgcataatcatatccaagtccagatagaatcaacctc 1908

                                                                        
Query: 512  ccatcaagggggtagatgagattttgaaaagataacaggcttaaagaaaaggcagcttct 571
             |||||||||| || ||||| | ||| ||||||||||  |||| || |||||| ||| ||
Sbjct: 1907 tcatcaaggggataaatgaggtgttggaaagataacaaacttagaggaaaggctgctgct 1848

                                                                        
Query: 572  ctcagagacacctcgtcttttttcttgacctgtttaaggagcaacaggtaattctctgtt 631
            | ||||||   ||| || ||  ||  || || ||| || |||| |||||| |||||||| 
Sbjct: 1847 cgcagagatgtctcatccttcgtcaagaactttttcagaagcagcaggtagttctctgta 1788

                                                                        
Query: 632  actttatgcttcctccatttatccaaattgatcacattcaccccagacatccatgcacat 691
            ||||| ||||||||||||||||||||||| || ||||| |  ||||||||||||||||||
Sbjct: 1787 actttgtgcttcctccatttatccaaatttataacatttattccagacatccatgcacat 1728

              
Query: 692  ga 693
            ||
Sbjct: 1727 ga 1726
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>dbj|AK103213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122M12, full
            insert sequence
          Length = 2768

 Score =  202 bits (102), Expect = 1e-48
 Identities = 297/362 (82%)
 Strand = Plus / Minus

                                                                        
Query: 332  ttgcactcgtccatgaatcgatcttctcgggtgagaaacctcctccagtacttcttgtag 391
            |||||||| |||||||||  ||| ||||| || || |||||| |||||||  || |||||
Sbjct: 2087 ttgcactcatccatgaatttatcgtctcgagttaggaacctcttccagtatctcctgtag 2028

                                                                        
Query: 392  tccggtatgcctaactcgagccaaggcttcatattgccattgtagtgcaatgctgcagag 451
               ||||| ||||| || |||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 2027 cttggtatacctaattcaagccaaggtttcatattgccattgtagtgcaatgctgcagaa 1968

                                                                        
Query: 452  ctctgtgcaacctccggatcgattccatagtcatatccaagtccagacagagtcgacctc 511
            ||| ||||||| ||   ||| ||| |||| ||||||||||||||||| ||| || |||||
Sbjct: 1967 ctccgtgcaacgtcttcatcaattgcataatcatatccaagtccagatagaatcaacctc 1908

                                                                        
Query: 512  ccatcaagggggtagatgagattttgaaaagataacaggcttaaagaaaaggcagcttct 571
             |||||||||| || ||||| | ||| ||||||||||  |||| || |||||| ||| ||
Sbjct: 1907 tcatcaaggggataaatgaggtgttggaaagataacaaacttagaggaaaggctgctgct 1848

                                                                        
Query: 572  ctcagagacacctcgtcttttttcttgacctgtttaaggagcaacaggtaattctctgtt 631
            | ||||||   ||| || ||  ||  || || ||| || |||| |||||| |||||||| 
Sbjct: 1847 cgcagagatgtctcatccttcgtcaagaactttttcagaagcagcaggtagttctctgta 1788

                                                                        
Query: 632  actttatgcttcctccatttatccaaattgatcacattcaccccagacatccatgcacat 691
            ||||| ||||||||||||||||||||||| || ||||| |  ||||||||||||||||||
Sbjct: 1787 actttgtgcttcctccatttatccaaatttataacatttattccagacatccatgcacat 1728

              
Query: 692  ga 693
            ||
Sbjct: 1727 ga 1726
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>gb|AY111892.1| Zea mays CL34424_1 mRNA sequence
          Length = 674

 Score =  184 bits (93), Expect = 3e-43
 Identities = 156/177 (88%)
 Strand = Plus / Minus

                                                                       
Query: 321 acggatttacattgcactcgtccatgaatcgatcttctcgggtgagaaacctcctccagt 380
           |||||||||| |||||||||||||| ||||||||| |||||   ||||||||| ||||||
Sbjct: 333 acggatttacgttgcactcgtccataaatcgatctcctcggtcaagaaacctcttccagt 274

                                                                       
Query: 381 acttcttgtagtccggtatgcctaactcgagccaaggcttcatattgccattgtagtgca 440
           ||||||||||||||||||| ||||| || |||||||| ||||| ||||||||||||||||
Sbjct: 273 acttcttgtagtccggtatacctaattcaagccaaggtttcatgttgccattgtagtgca 214

                                                                    
Query: 441 atgctgcagagctctgtgcaacctccggatcgattccatagtcatatccaagtccag 497
           ||| |||||| ||| | ||||||||   |||||||||||| || |||||||||||||
Sbjct: 213 atgatgcagatctccgcgcaacctcttcatcgattccataatcgtatccaagtccag 157
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  151 bits (76), Expect = 4e-33
 Identities = 205/248 (82%)
 Strand = Plus / Minus

                                                                            
Query: 332      ttgcactcgtccatgaatcgatcttctcgggtgagaaacctcctccagtacttcttgtag 391
                |||||||| |||||||||  ||| ||||| || || |||||| |||||||  || |||||
Sbjct: 28859768 ttgcactcatccatgaatttatcgtctcgagttaggaacctcttccagtatctcctgtag 28859709

                                                                            
Query: 392      tccggtatgcctaactcgagccaaggcttcatattgccattgtagtgcaatgctgcagag 451
                   ||||| ||||| || |||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 28859708 cttggtatacctaattcaagccaaggtttcatattgccattgtagtgcaatgctgcagaa 28859649

                                                                            
Query: 452      ctctgtgcaacctccggatcgattccatagtcatatccaagtccagacagagtcgacctc 511
                ||| ||||||| ||   ||| ||| |||| ||||||||||||||||| ||| || |||||
Sbjct: 28859648 ctccgtgcaacgtcttcatcaattgcataatcatatccaagtccagatagaatcaacctc 28859589

                                                                            
Query: 512      ccatcaagggggtagatgagattttgaaaagataacaggcttaaagaaaaggcagcttct 571
                 |||||||||| || ||||| | ||| ||||||||||  |||| || |||||| ||| ||
Sbjct: 28859588 tcatcaaggggataaatgaggtgttggaaagataacaaacttagaggaaaggctgctgct 28859529

                        
Query: 572      ctcagaga 579
                | ||||||
Sbjct: 28859528 cgcagaga 28859521



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                            
Query: 611      agcaacaggtaattctctgttactttatgcttcctccatttatccaaattgatcacattc 670
                |||| |||||| |||||||| ||||| ||||||||||||||||||||||| || ||||| 
Sbjct: 28859287 agcagcaggtagttctctgtaactttgtgcttcctccatttatccaaatttataacattt 28859228

                                       
Query: 671      accccagacatccatgcacatga 693
                |  ||||||||||||||||||||
Sbjct: 28859227 attccagacatccatgcacatga 28859205
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>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0008J01
          Length = 159900

 Score =  151 bits (76), Expect = 4e-33
 Identities = 205/248 (82%)
 Strand = Plus / Minus

                                                                          
Query: 332    ttgcactcgtccatgaatcgatcttctcgggtgagaaacctcctccagtacttcttgtag 391
              |||||||| |||||||||  ||| ||||| || || |||||| |||||||  || |||||
Sbjct: 117454 ttgcactcatccatgaatttatcgtctcgagttaggaacctcttccagtatctcctgtag 117395

                                                                          
Query: 392    tccggtatgcctaactcgagccaaggcttcatattgccattgtagtgcaatgctgcagag 451
                 ||||| ||||| || |||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 117394 cttggtatacctaattcaagccaaggtttcatattgccattgtagtgcaatgctgcagaa 117335

                                                                          
Query: 452    ctctgtgcaacctccggatcgattccatagtcatatccaagtccagacagagtcgacctc 511
              ||| ||||||| ||   ||| ||| |||| ||||||||||||||||| ||| || |||||
Sbjct: 117334 ctccgtgcaacgtcttcatcaattgcataatcatatccaagtccagatagaatcaacctc 117275

                                                                          
Query: 512    ccatcaagggggtagatgagattttgaaaagataacaggcttaaagaaaaggcagcttct 571
               |||||||||| || ||||| | ||| ||||||||||  |||| || |||||| ||| ||
Sbjct: 117274 tcatcaaggggataaatgaggtgttggaaagataacaaacttagaggaaaggctgctgct 117215

                      
Query: 572    ctcagaga 579
              | ||||||
Sbjct: 117214 cgcagaga 117207



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                          
Query: 611    agcaacaggtaattctctgttactttatgcttcctccatttatccaaattgatcacattc 670
              |||| |||||| |||||||| ||||| ||||||||||||||||||||||| || ||||| 
Sbjct: 116973 agcagcaggtagttctctgtaactttgtgcttcctccatttatccaaatttataacattt 116914

                                     
Query: 671    accccagacatccatgcacatga 693
              |  ||||||||||||||||||||
Sbjct: 116913 attccagacatccatgcacatga 116891
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  129 bits (65), Expect = 1e-26
 Identities = 104/117 (88%)
 Strand = Plus / Plus

                                                                            
Query: 327      ttacattgcactcgtccatgaatcgatcttctcgggtgagaaacctcctccagtacttct 386
                ||||||||||||| ||||||||||| || ||||| || ||||||||| ||||||||||| 
Sbjct: 12107171 ttacattgcactcatccatgaatcgttcatctcgtgtaagaaacctcttccagtacttcc 12107230

                                                                         
Query: 387      tgtagtccggtatgcctaactcgagccaaggcttcatattgccattgtagtgcaatg 443
                ||||||||||||| |||||||| ||||||||||||||||| || || || |||||||
Sbjct: 12107231 tgtagtccggtatacctaactcaagccaaggcttcatattaccgttataatgcaatg 12107287



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                            
Query: 617      aggtaattctctgttactttatgcttcctccatttatccaaattgatcacattcacccca 676
                |||||||||||||| || ||||||| ||||||||| |||||||  |||||||||||||||
Sbjct: 12107642 aggtaattctctgtgacattatgctccctccatttctccaaatcaatcacattcacccca 12107701

                              
Query: 677      gacatccatgcaca 690
                |||||||| |||||
Sbjct: 12107702 gacatccaagcaca 12107715
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  129 bits (65), Expect = 1e-26
 Identities = 104/117 (88%)
 Strand = Plus / Plus

                                                                            
Query: 327      ttacattgcactcgtccatgaatcgatcttctcgggtgagaaacctcctccagtacttct 386
                ||||||||||||| ||||||||||| || ||||| || ||||||||| ||||||||||| 
Sbjct: 12103934 ttacattgcactcatccatgaatcgttcatctcgtgtaagaaacctcttccagtacttcc 12103993

                                                                         
Query: 387      tgtagtccggtatgcctaactcgagccaaggcttcatattgccattgtagtgcaatg 443
                ||||||||||||| |||||||| ||||||||||||||||| || || || |||||||
Sbjct: 12103994 tgtagtccggtatacctaactcaagccaaggcttcatattaccgttataatgcaatg 12104050



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                            
Query: 617      aggtaattctctgttactttatgcttcctccatttatccaaattgatcacattcacccca 676
                |||||||||||||| || ||||||| ||||||||| |||||||  |||||||||||||||
Sbjct: 12104405 aggtaattctctgtgacattatgctccctccatttctccaaatcaatcacattcacccca 12104464

                              
Query: 677      gacatccatgcaca 690
                |||||||| |||||
Sbjct: 12104465 gacatccaagcaca 12104478
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>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20,
              complete sequence
          Length = 144969

 Score =  129 bits (65), Expect = 1e-26
 Identities = 104/117 (88%)
 Strand = Plus / Plus

                                                                          
Query: 327    ttacattgcactcgtccatgaatcgatcttctcgggtgagaaacctcctccagtacttct 386
              ||||||||||||| ||||||||||| || ||||| || ||||||||| ||||||||||| 
Sbjct: 127751 ttacattgcactcatccatgaatcgttcatctcgtgtaagaaacctcttccagtacttcc 127810

                                                                       
Query: 387    tgtagtccggtatgcctaactcgagccaaggcttcatattgccattgtagtgcaatg 443
              ||||||||||||| |||||||| ||||||||||||||||| || || || |||||||
Sbjct: 127811 tgtagtccggtatacctaactcaagccaaggcttcatattaccgttataatgcaatg 127867



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                          
Query: 617    aggtaattctctgttactttatgcttcctccatttatccaaattgatcacattcacccca 676
              |||||||||||||| || ||||||| ||||||||| |||||||  |||||||||||||||
Sbjct: 128222 aggtaattctctgtgacattatgctccctccatttctccaaatcaatcacattcacccca 128281

                            
Query: 677    gacatccatgcaca 690
              |||||||| |||||
Sbjct: 128282 gacatccaagcaca 128295
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>dbj|AK066736.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088O16, full
            insert sequence
          Length = 2822

 Score =  129 bits (65), Expect = 1e-26
 Identities = 104/117 (88%)
 Strand = Plus / Minus

                                                                        
Query: 327  ttacattgcactcgtccatgaatcgatcttctcgggtgagaaacctcctccagtacttct 386
            ||||||||||||| ||||||||||| || ||||| || ||||||||| ||||||||||| 
Sbjct: 2248 ttacattgcactcatccatgaatcgttcatctcgtgtaagaaacctcttccagtacttcc 2189

                                                                     
Query: 387  tgtagtccggtatgcctaactcgagccaaggcttcatattgccattgtagtgcaatg 443
            ||||||||||||| |||||||| ||||||||||||||||| || || || |||||||
Sbjct: 2188 tgtagtccggtatacctaactcaagccaaggcttcatattaccgttataatgcaatg 2132



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                        
Query: 617  aggtaattctctgttactttatgcttcctccatttatccaaattgatcacattcacccca 676
            |||||||||||||| || ||||||| ||||||||| |||||||  |||||||||||||||
Sbjct: 1955 aggtaattctctgtgacattatgctccctccatttctccaaatcaatcacattcacccca 1896

                          
Query: 677  gacatccatgcaca 690
            |||||||| |||||
Sbjct: 1895 gacatccaagcaca 1882
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>gb|AY110407.1| Zea mays CL40803_1 mRNA sequence
          Length = 667

 Score =  103 bits (52), Expect = 8e-19
 Identities = 106/124 (85%)
 Strand = Plus / Plus

                                                                       
Query: 327 ttacattgcactcgtccatgaatcgatcttctcgggtgagaaacctcctccagtacttct 386
           ||||||||||||||||||||||||  || ||||| || ||||||||| ||||||||||| 
Sbjct: 352 ttacattgcactcgtccatgaatctctcgtctcgtgtaagaaacctcttccagtacttcc 411

                                                                       
Query: 387 tgtagtccggtatgcctaactcgagccaaggcttcatattgccattgtagtgcaatgctg 446
           | || || ||||| || ||||| |||||||| |||||||| ||||| || ||||||| ||
Sbjct: 412 tataatctggtatacccaactcaagccaaggtttcatatttccattataatgcaatgatg 471

               
Query: 447 caga 450
           ||||
Sbjct: 472 caga 475



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 473 attccatagtcatatccaagtccaga 498
           ||||||||||||||||||||||||||
Sbjct: 498 attccatagtcatatccaagtccaga 523
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>gb|AC132215.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
           OSJNBa0076E06, from chromosome 3, complete sequence
          Length = 126323

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                       
Query: 617 aggtaattctctgttactttatgcttcctccatttatccaaattgatcacattcacccca 676
           |||||||||||||| || ||||||| ||||||||| |||||||  |||||||||||||||
Sbjct: 251 aggtaattctctgtgacattatgctccctccatttctccaaatcaatcacattcacccca 310

                         
Query: 677 gacatccatgcaca 690
           |||||||| |||||
Sbjct: 311 gacatccaagcaca 324
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>ref|XM_481635.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2371

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 410  agccaaggcttcatattgccattgta 435
            ||||||||||||||||||||||||||
Sbjct: 1897 agccaaggcttcatattgccattgta 1872
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 410      agccaaggcttcatattgccattgta 435
                ||||||||||||||||||||||||||
Sbjct: 14395356 agccaaggcttcatattgccattgta 14395331
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>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0670E08
          Length = 133106

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 410   agccaaggcttcatattgccattgta 435
             ||||||||||||||||||||||||||
Sbjct: 39639 agccaaggcttcatattgccattgta 39614
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>dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1136_A10
          Length = 101249

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 410   agccaaggcttcatattgccattgta 435
             ||||||||||||||||||||||||||
Sbjct: 98436 agccaaggcttcatattgccattgta 98411
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>dbj|AK073839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070B13, full
            insert sequence
          Length = 2371

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 410  agccaaggcttcatattgccattgta 435
            ||||||||||||||||||||||||||
Sbjct: 1897 agccaaggcttcatattgccattgta 1872
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>gb|AY110340.1| Zea mays CL35108_1 mRNA sequence
          Length = 844

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 409 gagccaaggcttcatattgccattgtagtgca 440
           |||||| ||||||||||| |||||||||||||
Sbjct: 579 gagccatggcttcatatttccattgtagtgca 610
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>gb|AC008341.3| Drosophila melanogaster clone BACR15P11, complete sequence
          Length = 171235

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 79     cgaaaccatcaatcaatcgtgt 100
              ||||||||||||||||||||||
Sbjct: 168740 cgaaaccatcaatcaatcgtgt 168761
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>emb|AL137011.9| Human DNA sequence from clone RP4-662A9 on chromosome 6 Contains part
             of a novel gene and a novel gene, complete sequence
          Length = 109088

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 620   taattctctgttactttatgcttcct 645
             ||||| ||||||||||||||||||||
Sbjct: 79496 taattatctgttactttatgcttcct 79521
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>gb|AC007086.10|AC007086 Drosophila melanogaster, chromosome 2R, region 45A-46A, BAC clone
              BACR14J24, complete sequence
          Length = 186241

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 79     cgaaaccatcaatcaatcgtgt 100
              ||||||||||||||||||||||
Sbjct: 146742 cgaaaccatcaatcaatcgtgt 146721
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>gb|AE003833.4| Drosophila melanogaster chromosome 2R, section 17 of 73 of the complete
              sequence
          Length = 297107

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 79     cgaaaccatcaatcaatcgtgt 100
              ||||||||||||||||||||||
Sbjct: 112409 cgaaaccatcaatcaatcgtgt 112430
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>emb|AL935127.9| Mouse DNA sequence from clone RP23-431O5 on chromosome 2, complete
             sequence
          Length = 98852

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 224   gagctacaggcagcatccactc 245
             ||||||||||||||||||||||
Sbjct: 94151 gagctacaggcagcatccactc 94172
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>emb|AL162274.17| Human DNA sequence from clone RP11-45A17 on chromosome 10 Contains the
             BNIP3 gene for BCL2/adenovirus E1B 19kD-interacting
             protein 3, the 5' end of a novel gene, possible ortholog
             of mouse RIKEN cDNA 6330417G02 geneand CpG islands,
             complete sequence
          Length = 148891

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 522   ggtagatgagattttgaaaag 542
             |||||||||||||||||||||
Sbjct: 12174 ggtagatgagattttgaaaag 12194
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>emb|AL109837.22|HS1128N12 Human DNA sequence from clone RP5-1128N12 on chromosome 20 Contains
           the PGAM3P gene for phosphoglycerate mutase 3 pseudogene
           and a CpG island, complete sequence
          Length = 139214

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 367 aaacctcctccagtacttctt 387
           |||||||||||||||||||||
Sbjct: 956 aaacctcctccagtacttctt 936
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>emb|AL929061.31| Mouse DNA sequence from clone RP23-402A18 on chromosome X, complete
             sequence
          Length = 146071

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   tggacagatgatgctgtgtct 130
             |||||||||||||||||||||
Sbjct: 96811 tggacagatgatgctgtgtct 96831
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>gb|AY886764.1| Homo sapiens BCL2/adenovirus E1B 19kDa interacting protein 3 (BNIP3)
            gene, complete cds
          Length = 18186

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 522  ggtagatgagattttgaaaag 542
            |||||||||||||||||||||
Sbjct: 5685 ggtagatgagattttgaaaag 5665
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>emb|AL365333.13| Mouse DNA sequence from clone RP21-490L20 on chromosome X, complete
             sequence
          Length = 151792

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   tggacagatgatgctgtgtct 130
             |||||||||||||||||||||
Sbjct: 36865 tggacagatgatgctgtgtct 36885
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>ref|XM_474034.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1671

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 410  agccaaggcttcatattgccattgtagtgcaa 441
            ||||| ||||||||||| |||||||| |||||
Sbjct: 1583 agccatggcttcatatttccattgtaatgcaa 1552
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>gb|AC145365.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0069E11, complete sequence
          Length = 136959

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   atcgattccatagtcatatc 488
             ||||||||||||||||||||
Sbjct: 10881 atcgattccatagtcatatc 10862
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>gb|AC145324.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
           OSJNBb0026D03 map near S2137, complete sequence
          Length = 115141

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 469 atcgattccatagtcatatc 488
           ||||||||||||||||||||
Sbjct: 445 atcgattccatagtcatatc 464
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>gb|AC100727.10| Mus musculus chromosome 1, clone RP24-278K16, complete sequence
          Length = 170056

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 93     aatcgtgttcaatgcaatggacagatga 120
              ||||||||||||||| ||| ||||||||
Sbjct: 125473 aatcgtgttcaatgctatgcacagatga 125500
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>emb|Z35599.1|CEF25F2 Caenorhabditis elegans Cosmid F25F2, complete sequence
          Length = 29551

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 529  gagattttgaaaagataaca 548
            ||||||||||||||||||||
Sbjct: 9209 gagattttgaaaagataaca 9190
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>emb|AL121958.6|HSDJ71H19 Human DNA sequence from clone RP1-71H19 on chromosome 6 Contains part of
              the PRIM2A gene for primase polypeptide 2A (58kD) and a
              novel gene, complete sequence
          Length = 138411

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 555    aagaaaaggcagcttctctc 574
              ||||||||||||||||||||
Sbjct: 133015 aagaaaaggcagcttctctc 133034
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>emb|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5
          Length = 341050

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 536    tgaaaagataacaggcttaaagaa 559
              ||||||||||||| ||||||||||
Sbjct: 312464 tgaaaagataacatgcttaaagaa 312487
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>emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034I13,
            complete sequence
          Length = 123480

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 410  agccaaggcttcatattgccattgtagtgcaa 441
            ||||| ||||||||||| |||||||| |||||
Sbjct: 6207 agccatggcttcatatttccattgtaatgcaa 6176
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>emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L09,
              complete sequence
          Length = 159502

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 410    agccaaggcttcatattgccattgtagtgcaa 441
              ||||| ||||||||||| |||||||| |||||
Sbjct: 158995 agccatggcttcatatttccattgtaatgcaa 158964
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>gb|AC092723.3| Homo sapiens chromosome 16 clone RP11-542M13, complete sequence
          Length = 188458

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 214   cagctcctgggagctacaggcagc 237
             ||||||||||||||| ||||||||
Sbjct: 26343 cagctcctgggagctccaggcagc 26366
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>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold
          Length = 501879

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    caatgcaatggacagatgat 121
              ||||||||||||||||||||
Sbjct: 448580 caatgcaatggacagatgat 448561
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 410      agccaaggcttcatattgccattgtagtgcaa 441
                ||||| ||||||||||| |||||||| |||||
Sbjct: 32389406 agccatggcttcatatttccattgtaatgcaa 32389375
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 469     atcgattccatagtcatatc 488
               ||||||||||||||||||||
Sbjct: 8331955 atcgattccatagtcatatc 8331936
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>gb|AC013727.7| Homo sapiens BAC clone RP11-451G1 from 2, complete sequence
          Length = 167519

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 539   aaagataacaggcttaaagaaaag 562
             |||||||| |||||||||||||||
Sbjct: 32653 aaagataagaggcttaaagaaaag 32630
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>dbj|AK067760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119I03, full
            insert sequence
          Length = 2377

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 410  agccaaggcttcatattgccattgtagtgcaa 441
            ||||| ||||||||||| |||||||| |||||
Sbjct: 1877 agccatggcttcatatttccattgtaatgcaa 1846
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>emb|AL512546.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0410G08, complete
             sequence
          Length = 63554

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 410   agccaaggcttcatattgccattgtagtgcaa 441
             ||||| ||||||||||| |||||||| |||||
Sbjct: 50833 agccatggcttcatatttccattgtaatgcaa 50802
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 469     atcgattccatagtcatatc 488
               ||||||||||||||||||||
Sbjct: 8402718 atcgattccatagtcatatc 8402699
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>gb|AC135634.4| Mus musculus BAC clone RP23-121I20 from 9, complete sequence
          Length = 209177

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    ttccatcatcctttacctgt 55
             ||||||||||||||||||||
Sbjct: 30143 ttccatcatcctttacctgt 30124
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>emb|AL354926.17| Human DNA sequence from clone RP1-216J23 on chromosome 6, complete
             sequence
          Length = 163140

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 555   aagaaaaggcagcttctctc 574
             ||||||||||||||||||||
Sbjct: 39599 aagaaaaggcagcttctctc 39618


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,710,795
Number of Sequences: 3902068
Number of extensions: 6710795
Number of successful extensions: 113950
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113628
Number of HSP's gapped (non-prelim): 322
length of query: 714
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 691
effective length of database: 17,143,297,704
effective search space: 11846018713464
effective search space used: 11846018713464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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