>DBP8_CRYNE (Q5KPU1) ATP-dependent RNA helicase DBP8 (EC 3.6.1.-)|
          Length = 619

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
 Frame = +3

Query: 336 VHLHNHTQQLTPLLNLGQEMVRVHEI---IASRVGAKRLTPVVVESKQPALVYDWECVRR 506
           V LH+H  Q   LL+L +   R HE+   + + VG++ L     +  + A+V +W+C RR
Sbjct: 466 VPLHSHLTQPQRLLSLAR--FRAHEVPVLVTTDVGSRGL-----DIPEVAMVINWDCPRR 518

Query: 507 IDWNYIH 527
            D +Y+H
Sbjct: 519 SD-DYVH 524

>DREB_CHICK (P18302) Drebrin (Developmentally-regulated brain protein)|
          Length = 651

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 194 SAQTEGLHCPGSTTA--GPPSAGT*RSTPPRVSSPY 295
           S +T  LHCP   TA  GPPS+ +  S+PPR   PY
Sbjct: 311 SHRTGRLHCPFIKTADSGPPSSSSSSSSPPRTPFPY 346

>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +3

Query: 288  LHIVPDNQPPFRPHYPVHLHNHTQQLTPLLNLGQEMVRVHEIIASRVGAKRLTPVVVESK 467
            LH+ P N+ P R H P H+           +  ++++  H I+AS    +RLT + +   
Sbjct: 1186 LHVPPSNKWPHRLHLPPHIPT---------SHSKDVILAHGIVASNAPERRLTTLHLPPT 1236

Query: 468  QPALVYDWE 494
            +  L +D E
Sbjct: 1237 RLPLHFDLE 1245

>NHR47_CAEEL (Q17370) Nuclear hormone receptor family member nhr-47|
          Length = 579

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 533 WVMNIVPIDSPDTLPIIYERGLFGLYHDWCESFSTY 426
           W  N+V  +  D LP   +R L  LY DW ++FST+
Sbjct: 190 WSDNVVLTNRDDKLPFWRQR-LIALYIDWAKTFSTF 224

>NAL14_HUMAN (Q86W24) NACHT-, LRR- and PYD-containing protein 14|
           (Nucleotide-binding oligomerization domain protein 5)
          Length = 1093

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 24/98 (24%), Positives = 44/98 (44%)
 Frame = -1

Query: 512 IDSPDTLPIIYERGLFGLYHDWCESFSTYPRSYDLVHANHLLSKIKKRCELLGVIVEVDR 333
           IDS D L   +E   F L  DW +    +P S+       L+S + ++            
Sbjct: 258 IDSFDELNFAFEEPEFALCEDWTQE---HPVSF-------LMSSLLRK------------ 295

Query: 332 IVRPEGRLIVRDDMETIREVESIVKSLHWEVRLSYSQD 219
           ++ PE  L+V   + T + ++ ++K+ H+   L  S+D
Sbjct: 296 VMLPEASLLVTTRLTTSKRLKQLLKNHHYVELLGMSED 333

>SKEL_DROME (Q9GPJ1) Protein skeletor|
          Length = 743

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +3

Query: 282 YRLHIVPDNQPPFRPHYPVHLHNHTQQLTPLLNLGQEMVRVHEIIASRVGAKRLTPVVVE 461
           +RLH    +QP   PH  VHLH+H      L  L Q+ + + E +     A    PV + 
Sbjct: 153 HRLH----HQPQHAPHPHVHLHHHNLTAN-LPALAQKTIGLSEFLRPPQNAPLFHPVKLP 207

Query: 462 SKQP 473
            ++P
Sbjct: 208 GRRP 211

>DNAA_CLOPE (Q8XPG2) Chromosomal replication initiator protein dnaA|
          Length = 457

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 162 TRRSIWSPHGLLHKQKAFIVLGVRQPDLPVQGLDDRLHLAYRLHIVPDNQPP 317
           T+   +     LH++   I+L   +P   +  L+DRL   +   ++ D QPP
Sbjct: 234 TQEEFFHTFNALHEENKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPP 285

>CLPA_RHOBL (P05444) ClpA homolog protein|
          Length = 793

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = -1

Query: 401 ANHLLSKIKKRCELLG---VIVEVDRIVRPEGRLIVRDDMETIREVESIVKSLHWEVRLS 231
           A HL+S  K++ ++LG   +   V +I R   R + +DD ET+R++E  +K      RL 
Sbjct: 438 AQHLVSDSKRK-KVLGTKEIEAVVAKIARIPPRNVSKDDAETLRDLERTLK------RLV 490

Query: 230 YSQD 219
           + QD
Sbjct: 491 FGQD 494

>PRMA_SYNPX (Q7TTX0) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = -1

Query: 368 CELLGVIVEV-----DRIVRPEGRLIVRDDM-ETIREVESIVKSLHWEVRLSYSQDNEGL 207
           C +L  ++E      + +V PEGR ++   + +    +E ++  L W V    SQ   GL
Sbjct: 224 CNILAPVIEALAPGFEALVAPEGRALLSGLLVDQAPRLEQVLGDLGWRVSARGSQGRWGL 283

Query: 206 LFVQK 192
           L +Q+
Sbjct: 284 LEIQR 288

>CHS2_SCHPO (O74756) Chitin synthase-like protein 2|
          Length = 926

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -2

Query: 502 LTHSQSYTSAGCLDSTTTGVSRLAPTREAMISCTRTISCP 383
           +THSQSYTS   L+S+++  S+  P    ++  + TI CP
Sbjct: 159 MTHSQSYTSIDRLNSSSSHYSKDVP----LLCGSLTIDCP 194

>MBR1_YEAST (P23493) Protein MBR1|
          Length = 339

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
 Frame = +1

Query: 37  ANLTTKLTVTTSSQYAM--PLHKHNVYINGCMVHPDPPYSSFGQLEEVFGRHMVFCTNRR 210
           A  T+  T ++S+   M  PL K N  ING +V+     SS   + E+F      CT ++
Sbjct: 134 AKTTSYFTSSSSNNTTMRNPLKKCNTNINGLLVNGRSSSSSRQSIPELFSG---ACTKKK 190

Query: 211 PSLSWEYDSRTSQCRDLTIDSTSRIVSISSLTISLPSGLTIRSTSTITPNSSHLF 375
            ++  + ++  S+       S++ +   +S + SLP     RS S+     +HL+
Sbjct: 191 NNVLLKSETPNSEF------SSNSLQHCNSRSFSLPRS---RSRSSAIAIPTHLY 236

>DNAA_STRRE (Q9ZH76) Chromosomal replication initiator protein dnaA|
          Length = 643

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 159 STRRSIWSPHGLLHKQKAFIVLGVRQPDLPVQGLDDRLHLAYRLHIVPDNQPP 317
           ST+   +     LH     IVL   +P   +  L+DRL   +   ++ D QPP
Sbjct: 417 STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPP 469

>DNAA_STRAW (Q82FD8) Chromosomal replication initiator protein dnaA|
          Length = 653

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 159 STRRSIWSPHGLLHKQKAFIVLGVRQPDLPVQGLDDRLHLAYRLHIVPDNQPP 317
           ST+   +     LH     IVL   +P   +  L+DRL   +   ++ D QPP
Sbjct: 427 STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPP 479

>DNAA_STRCO (P27902) Chromosomal replication initiator protein dnaA|
          Length = 656

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 159 STRRSIWSPHGLLHKQKAFIVLGVRQPDLPVQGLDDRLHLAYRLHIVPDNQPP 317
           ST+   +     LH     IVL   +P   +  L+DRL   +   ++ D QPP
Sbjct: 430 STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPP 482

>DHMA_MYCAV (Q93K00) Haloalkane dehalogenase (EC 3.8.1.5)|
          Length = 301

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 17/122 (13%)
 Frame = +3

Query: 228 VRQPDLPVQGLDDRLHLAYRLHIVPDNQPPFRPHY-----------------PVHLHNHT 356
           +R PD   + L+D   +A+ L +   +  P R HY                 P   + + 
Sbjct: 4   LRTPDSRFENLEDYPFVAHYLDVTARDTRPLRMHYLDEGPIDGPPIVLLHGEPTWSYLYR 63

Query: 357 QQLTPLLNLGQEMVRVHEIIASRVGAKRLTPVVVESKQPALVYDWECVRRIDWNYIHDPH 536
             +TPL + G  ++    I   R            S +P+ + D+   R +DW      H
Sbjct: 64  TMITPLTDAGNRVLAPDLIGFGR------------SDKPSRIEDYSYQRHVDWVVSWFEH 111

Query: 537 LS 542
           L+
Sbjct: 112 LN 113

>MODC_HAEIN (P45321) Molybdenum import ATP-binding protein modC (EC 3.6.3.29)|
          Length = 351

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = +3

Query: 333 PVHLHNHTQQLTPLLNLGQEMVRVHEIIAS 422
           PVHLHN   ++T  L+LG++++ +H++ A+
Sbjct: 238 PVHLHNPPYKMT-ALSLGEQVLWIHQVPAN 266

>CM4T_STRPE (Q06528) Carminomycin 4-O-methyltransferase (EC 2.1.1.-) (COMT)|
          Length = 355

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 615 DWSAVRNVMDMKAVYGGFAAAL 550
           DW+ VR+V+D+    GGFAAA+
Sbjct: 175 DWTNVRHVLDVGGGKGGFAAAI 196

>TUSA_BUCBP (Q89AB9) Sulfurtransferase tusA (EC 2.8.1.-) (tRNA 2-thiouridine|
           synthesizing protein A)
          Length = 79

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = -1

Query: 398 NHLLSKIKKRCE--LLGVIVEVDRIVRPEGRLIVRDDMETIREVESIVKSLHWEVRLSYS 225
           N++L   K RC   ++ +  ++  I      LI+ DD  TIRE+    K +H ++    +
Sbjct: 5   NNVLDLRKLRCPEPIMLLRKKIREIKNGTTLLILSDDPSTIREIPQYCKFMHHKLLKINT 64

Query: 224 QDNEGLLFVQKT 189
           +D     ++QKT
Sbjct: 65  KDTIYKFWIQKT 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,482,873
Number of Sequences: 219361
Number of extensions: 2189310
Number of successful extensions: 6701
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6697
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)