>RHSB_ECOLI (P16917) Protein rhsB precursor|
          Length = 1411

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 121 GTRMPGPNKHPDSLYKFWP 177
           G R+P P  HPDS    WP
Sbjct: 907 GNRLPDPELHPDSTLSMWP 925

>RHSC_ECOLI (P16918) Protein rhsC precursor|
          Length = 1397

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 121 GTRMPGPNKHPDSLYKFWP 177
           G R+P P  HPDS    WP
Sbjct: 907 GNRLPDPELHPDSALSMWP 925

>RHSA_ECOLI (P16916) Protein rhsA precursor|
          Length = 1377

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 121 GTRMPGPNKHPDSLYKFWP 177
           G R+P P  HPDS    WP
Sbjct: 907 GNRLPDPELHPDSTLSMWP 925

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 180  GHCIAPTPMPTV--TPGPSQISAKMGRLKAQQRS 275
            GH  APTPMPT    P P Q  ++    K +Q S
Sbjct: 3124 GHYAAPTPMPTTQSAPFPVQADSRAAHQKPRQTS 3157

>SYR_BORPA (Q7W2Q2) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 561

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
 Frame = +3

Query: 90  LCYLYSGS-----HPWHQNAWAEQASRLTIQILARGHCIAPTPMPTVTPGPS-----QIS 239
           +C LY  S       ++ N    Q   L I + ARG  IAP      T G       +I+
Sbjct: 149 ICRLYDASGWDVTREFYYNDAGNQIDNLAISVQARGRGIAPDAPDYPTDGYKGDYIVEIA 208

Query: 240 AKMGRLKAQQRSQGQP 287
                 K+ Q S GQP
Sbjct: 209 RDFAARKSVQASDGQP 224

>RHSD_ECOLI (P16919) Protein rhsD precursor|
          Length = 1426

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 121 GTRMPGPNKHPDSLYKFWP 177
           G R+P P  HPDS    WP
Sbjct: 918 GNRLPDPELHPDSTLTVWP 936

>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)|
          Length = 644

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 45  RNEYSI-YPAKWQDCILCYLYSGSHPWHQNAWA 140
           ++EY+  YPA +      Y Y   HP H NAWA
Sbjct: 603 KSEYAASYPADFGAGTASYGYPHPHPHHHNAWA 635

>GA2L2_HUMAN (Q8NHY3) GAS2-like protein 2 (Growth arrest-specific 2-like 2)|
           (GAS2-related protein on chromosome 17) (GAR17 protein)
          Length = 880

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 192 APT--PMPTVTPGPSQISAKMGRLKAQQRSQ 278
           APT  P P VTPGP  +  K+G  ++  R++
Sbjct: 676 APTGSPKPAVTPGPGSLKGKLGARQSGPRTK 706

>RHSE_ECOLI (P24211) Protein rhsE|
          Length = 682

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 121 GTRMPGPNKHPDSLYKFWP 177
           G R+P P  HPDS    WP
Sbjct: 193 GNRLPDPELHPDSTLTVWP 211

>SET2_CAEEL (Q18221) Protein set-2|
          Length = 1507

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +3

Query: 111  SHPWHQ----NAWAEQASRLTIQILARGHCIAPTPMPTVTPGPSQISAKMGRLKAQQRSQ 278
            SHP HQ    +A A  ++ +     +R   +APTP  TV+   S  SA      ++  S 
Sbjct: 856  SHPKHQEHHHHAKASVSTPVHSSSTSRNSSVAPTPQRTVSTSSSSSSAATSARVSEDESD 915

Query: 279  GQPPP 293
                P
Sbjct: 916  SDSTP 920

>HR78_DROME (Q24142) Nuclear hormone receptor HR78 (dHR78) (Nuclear receptor|
           XR78E/F)
          Length = 601

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -2

Query: 223 PGVTVGIGVGAMQWPLARICIVSLDACSAQ---AFWCHGCEPLYR 98
           PG  VG+G GA       +C+V  D  S +   A  C GC+  ++
Sbjct: 33  PGGGVGMGAGASATLSVELCLVCGDRASGRHYGAISCEGCKGFFK 77

>BAG3_MOUSE (Q9JLV1) BAG family molecular chaperone regulator 3 (BCL-2-binding|
           athanogene-3) (BAG-3) (Bcl-2-binding protein Bis)
          Length = 577

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 192 APTPMPTVTPGPSQISAKMGRLKAQQRSQGQPPP 293
           AP P P+ +P PS + +    + A+Q++   P P
Sbjct: 374 APIPCPSPSPAPSAVPSPPKNVAAEQKAAPSPAP 407

>GPNMB_RAT (Q6P7C7) Transmembrane glycoprotein NMB precursor|
          Length = 572

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 156 LTIQILARGHCIAPTPMPTVTPGPSQISA 242
           LT+Q    G C +PTP P+ +  PS  S+
Sbjct: 313 LTVQTAVPGPCPSPTPSPSSSTSPSPASS 341

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
 Frame = +3

Query: 180  GHCIAPTPMPTV--TPGPSQISAKMGRLKAQQRSQG---QPPPER*EVVXXXXXXXXXXX 344
            GH  APTPMPT    P P Q  +     K +Q S     Q  P   EV+           
Sbjct: 3109 GHYAAPTPMPTTQSAPFPVQADSHAAHQKPRQTSLADLEQKVPTNYEVISSPAVTVSSTP 3168

Query: 345  XXXXXXGVARAFLFE 389
                  G A +  +E
Sbjct: 3169 SETGYSGPAVSSSYE 3183


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,761,179
Number of Sequences: 219361
Number of extensions: 1291468
Number of successful extensions: 5216
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5194
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)