ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TALA_DICDI (P54633) Filopodin (Talin homolog) 30 4.0
2CADH1_HUMAN (P12830) Epithelial-cadherin precursor (E-cadherin) ... 29 5.2
3FAHD1_MOUSE (Q8R0F8) Fumarylacetoacetate hydrolase domain-contai... 28 8.9
42A5D_YEAST (P38903) Serine/threonine-protein phosphatase 2A 56 k... 28 8.9
5FAHD1_RAT (Q6AYQ8) Fumarylacetoacetate hydrolase domain-containi... 28 8.9

>TALA_DICDI (P54633) Filopodin (Talin homolog)|
          Length = 2492

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 255 SXSSXATAKGYSSCGRSAPGTSTNLVTPLAPLXASISALDLL-GEFSVDTTKTGTXPSNL 431
           S ++ ++  GY + G  A     +   P+  L +++ A DLL GE     + TG  P N 
Sbjct: 391 SVANSSSYMGYGAGGGGANQLQPSQQIPITDLKSALRATDLLIGELGGFRSSTGATPQNF 450

Query: 432 ANS 440
             S
Sbjct: 451 TRS 453



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>CADH1_HUMAN (P12830) Epithelial-cadherin precursor (E-cadherin) (Uvomorulin)|
           (Cadherin-1) (CAM 120/80) (CD324 antigen) [Contains:
           E-Cad/CTF1; E-Cad/CTF2; E-Cad/CTF3]
          Length = 882

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 95  ISSWVPHXPEPASDGADVHTYSFNLCKKKM 6
           +SSW+   PEP   G D  +Y+F + ++ +
Sbjct: 17  VSSWLCQEPEPCHPGFDAESYTFTVPRRHL 46



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>FAHD1_MOUSE (Q8R0F8) Fumarylacetoacetate hydrolase domain-containing protein 1|
           (EC 3.-.-.-)
          Length = 227

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 300 CRRKNTPWQLXRSXTTSC 247
           C++K  PW L +S T+SC
Sbjct: 115 CKKKGLPWTLAKSFTSSC 132



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>2A5D_YEAST (P38903) Serine/threonine-protein phosphatase 2A 56 kDa regulatory|
           subunit delta isoform (PP2A, B subunit, B' delta
           isoform) (Protein RTS1) (Protein SCS1)
          Length = 757

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
 Frame = +3

Query: 231 DENDPCRKSXSSXATAKGYSSCGRSAPGTS--------TNLVTPLAPLXASISALDLLGE 386
           D+     KS ++ +T+K  +S   S+ GT+        +   T       S+ +      
Sbjct: 26  DKEKEKEKSSTTSSTSKKPASASSSSHGTTHSSASSTGSKSTTEKGKQSGSVPSQGKHHS 85

Query: 387 FSVDTTKTGTXPSNLANSCRNXSL 458
            S   TKT T PS+ ++S R+ S+
Sbjct: 86  SSTSKTKTATTPSSSSSSSRSSSV 109



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>FAHD1_RAT (Q6AYQ8) Fumarylacetoacetate hydrolase domain-containing protein 1|
           (EC 3.-.-.-)
          Length = 221

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 300 CRRKNTPWQLXRSXTTSC 247
           C++K  PW L +S T+SC
Sbjct: 109 CKKKGLPWTLAKSFTSSC 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,627,923
Number of Sequences: 219361
Number of extensions: 1063135
Number of successful extensions: 2578
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2578
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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