ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105830.1| Zea mays PCO092732 mRNA sequence 127 3e-26
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
3dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
4dbj|AK065233.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
5gb|AC126257.4| Mus musculus BAC clone RP24-247A8 from chromosome... 42 1.6
6gb|AC158395.2| Mus musculus BAC clone RP23-282I1 from chromosome... 42 1.6
7ref|XM_805181.1| Trypanosoma cruzi strain CL Brener thimet oligo... 40 6.3
8gb|AC007980.1| Arabidopsis thaliana chromosome I BAC F14I3 genom... 40 6.3
9gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete... 40 6.3
10gb|AC022145.8| Homo sapiens chromosome 19 clone CTD-2579N5, comp... 40 6.3
11gb|AC010617.8| Homo sapiens chromosome 19 clone CTD-2607J13, com... 40 6.3
12gb|AC105998.4| Homo sapiens chromosome 8, clone CTC-877B12, comp... 40 6.3
13gb|AC019176.4|AC019176 Homo sapiens BAC clone RP11-221H10 from 8... 40 6.3
14dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 40 6.3
15emb|AJ506309.1|ATH506309 Arabidopsis thaliana single-copy transg... 40 6.3
16gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.3
17gb|AF035676.1|AF035676 Gallus gallus cellular nucleic acid bindi... 40 6.3 
>gb|AY105830.1| Zea mays PCO092732 mRNA sequence
          Length = 1353

 Score =  127 bits (64), Expect = 3e-26
 Identities = 176/215 (81%)
 Strand = Plus / Minus

                                                                        
Query: 236  gaatgatccctgcaggaagtcgtanagctcctntgcaactgccaaggggtattcttcctg 295
            ||||||| |||||||||||  ||| || ||||  || |||||||||||||||||||||||
Sbjct: 1173 gaatgattcctgcaggaagctgtagagttcctccgcgactgccaaggggtattcttcctg 1114

                                                                        
Query: 296  cggcagaagcgcgcccgggacctccacgaatttggtcacgcctttggcgcccttganagc 355
            ||| ||||| ||||| | ||||||||| || || ||||| ||||| | |||| | | |||
Sbjct: 1113 cggtagaagagcgcctgcgacctccacaaacttcgtcacccctttagagccccttagagc 1054

                                                                        
Query: 356  ctccatctcggccttggacctnttgggggaattcagcgtcgacacaactaaaacagggac 415
            |||||||||||||||||| || ||||| | ||| | ||| ||||| || | ||| || ||
Sbjct: 1053 ctccatctcggccttggatctcttgggagcattgaccgttgacactaccagaactggtac 994

                                               
Query: 416  atntccgtccaacttggcaaacagctgcaggaact 450
             | |||||| |||||||| |||| |||||| ||||
Sbjct: 993  gtctccgtctaacttggcgaacaactgcagaaact 959
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  115 bits (58), Expect = 1e-22
 Identities = 144/174 (82%)
 Strand = Plus / Minus

                                                                            
Query: 286      attcttcctgcggcagaagcgcgcccgggacctccacgaatttggtcacgcctttggcgc 345
                |||| |||||||||||||| || || || |||||||||||||| ||||||||||||||||
Sbjct: 14661668 attcctcctgcggcagaagggcacctggaacctccacgaattttgtcacgcctttggcgc 14661609

                                                                            
Query: 346      ccttganagcctccatctcggccttggacctnttgggggaattcagcgtcgacacaacta 405
                |  ||| ||| |||||||| ||||| ||||| || |||| |||||  |||||  |||| |
Sbjct: 14661608 ctctgagagcttccatctcagccttcgacctcttcggggcattcacggtcgatgcaacca 14661549

                                                                      
Query: 406      aaacagggacatntccgtccaacttggcaaacagctgcaggaactnttcccttg 459
                 ||| ||  | |  ||||||||||||||||||||||| ||||| | ||||||||
Sbjct: 14661548 gaactggagcgtcaccgtccaacttggcaaacagctgaaggaattcttcccttg 14661495
to top
>dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0643D11
          Length = 137525

 Score =  115 bits (58), Expect = 1e-22
 Identities = 144/174 (82%)
 Strand = Plus / Minus

                                                                         
Query: 286   attcttcctgcggcagaagcgcgcccgggacctccacgaatttggtcacgcctttggcgc 345
             |||| |||||||||||||| || || || |||||||||||||| ||||||||||||||||
Sbjct: 83335 attcctcctgcggcagaagggcacctggaacctccacgaattttgtcacgcctttggcgc 83276

                                                                         
Query: 346   ccttganagcctccatctcggccttggacctnttgggggaattcagcgtcgacacaacta 405
             |  ||| ||| |||||||| ||||| ||||| || |||| |||||  |||||  |||| |
Sbjct: 83275 ctctgagagcttccatctcagccttcgacctcttcggggcattcacggtcgatgcaacca 83216

                                                                   
Query: 406   aaacagggacatntccgtccaacttggcaaacagctgcaggaactnttcccttg 459
              ||| ||  | |  ||||||||||||||||||||||| ||||| | ||||||||
Sbjct: 83215 gaactggagcgtcaccgtccaacttggcaaacagctgaaggaattcttcccttg 83162
to top
>dbj|AK065233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H15, full
            insert sequence
          Length = 1239

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                        
Query: 286  attcttcctgcggcagaagcgcgcccgggacctccacgaatttggtcacgcctttggcgc 345
            |||| |||||||||||||| || || || |||||||||||||| ||||||||||||||||
Sbjct: 1008 attcctcctgcggcagaagggcacctggaacctccacgaattttgtcacgcctttggcgc 949

             
Query: 346  c 346
            |
Sbjct: 948  c 948



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 423 tccaacttggcaaacagctgcaggaactnttcccttg 459
           |||||||||||||||||||| ||||| | ||||||||
Sbjct: 937 tccaacttggcaaacagctgaaggaattcttcccttg 901
to top
>gb|AC126257.4| Mus musculus BAC clone RP24-247A8 from chromosome 9, complete sequence
          Length = 174764

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 158   aaaaggcgatatgagttgaac 178
             |||||||||||||||||||||
Sbjct: 79315 aaaaggcgatatgagttgaac 79335
to top
>gb|AC158395.2| Mus musculus BAC clone RP23-282I1 from chromosome 14, complete sequence
          Length = 220498

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   atcaccccagtgtagtttcct 208
             |||||||||||||||||||||
Sbjct: 92683 atcaccccagtgtagtttcct 92663
to top
>ref|XM_805181.1| Trypanosoma cruzi strain CL Brener thimet oligopeptidase
            (Tc00.1047053511237.10) partial mRNA
          Length = 2061

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  tccacgaatttggtcacgcc 337
            ||||||||||||||||||||
Sbjct: 1418 tccacgaatttggtcacgcc 1437
to top
>gb|AC007980.1| Arabidopsis thaliana chromosome I BAC F14I3 genomic sequence, complete
             sequence
          Length = 100975

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 383   ggaattcagcgtcgacacaactaa 406
             ||||||||||| ||||||||||||
Sbjct: 59499 ggaattcagcggcgacacaactaa 59476
to top
>gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete sequence
          Length = 255062

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 109    tctttctaaaagctcaggtgcaacatgg 136
              ||||||| ||||||||||||||| ||||
Sbjct: 129241 tctttctcaaagctcaggtgcaagatgg 129268
to top
>gb|AC022145.8| Homo sapiens chromosome 19 clone CTD-2579N5, complete sequence
          Length = 174994

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    ctttctaaaagctcaggtgc 129
              ||||||||||||||||||||
Sbjct: 114282 ctttctaaaagctcaggtgc 114301
to top
>gb|AC010617.8| Homo sapiens chromosome 19 clone CTD-2607J13, complete sequence
          Length = 101166

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   ctttctaaaagctcaggtgc 129
             ||||||||||||||||||||
Sbjct: 35219 ctttctaaaagctcaggtgc 35200
to top
>gb|AC105998.4| Homo sapiens chromosome 8, clone CTC-877B12, complete sequence
          Length = 76970

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 74    tgtgtggcacccaggaactgatgg 97
             |||||||| |||||||||||||||
Sbjct: 29094 tgtgtggcccccaggaactgatgg 29117
to top
>gb|AC019176.4|AC019176 Homo sapiens BAC clone RP11-221H10 from 8, complete sequence
          Length = 170680

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   tgtgtggcacccaggaactgatgg 97
            |||||||| |||||||||||||||
Sbjct: 1453 tgtgtggcccccaggaactgatgg 1476
to top
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 176    aactcggtcaggatcaccccagtg 199
              |||| |||||||||||||||||||
Sbjct: 951478 aacttggtcaggatcaccccagtg 951455
to top
>emb|AJ506309.1|ATH506309 Arabidopsis thaliana single-copy transgenic T-DNA insertion line,
           clone MDL-Cf-8_LB
          Length = 640

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 383 ggaattcagcgtcgacacaactaa 406
           ||||||||||| ||||||||||||
Sbjct: 487 ggaattcagcggcgacacaactaa 510
to top
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 172     gttgaactcggtcaggatcacccc 195
               ||||||||||||||| ||||||||
Sbjct: 3777225 gttgaactcggtcagcatcacccc 3777202
to top
>gb|AF035676.1|AF035676 Gallus gallus cellular nucleic acid binding protein mRNA, complete
           cds
          Length = 1516

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 ctgcggcagaagcgcgcccg 312
           ||||||||||||||||||||
Sbjct: 91  ctgcggcagaagcgcgcccg 72


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,615,815
Number of Sequences: 3902068
Number of extensions: 2615815
Number of successful extensions: 39929
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39859
Number of HSP's gapped (non-prelim): 70
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top