ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5h08 |
|---|---|
| Clone Library Name | barley_pub |
>EFTU_TOBAC (P68158) Elongation factor Tu, chloroplast precursor (EF-Tu)| Length = 478 Score = 33.5 bits (75), Expect = 0.18 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = -3 Query: 56 VVELIQPVACDQGMRXAI 3 VVELI PVAC+QGMR AI Sbjct: 444 VVELIMPVACEQGMRFAI 461
>EFTUA_NICSY (Q40450) Elongation factor TuA, chloroplast precursor (EF-TuA)| Length = 478 Score = 33.5 bits (75), Expect = 0.18 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = -3 Query: 56 VVELIQPVACDQGMRXAI 3 VVELI PVAC+QGMR AI Sbjct: 444 VVELIMPVACEQGMRFAI 461
>EFTUB_NICSY (Q43364) Elongation factor TuB, chloroplast precursor (EF-TuB)| Length = 485 Score = 33.5 bits (75), Expect = 0.18 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = -3 Query: 56 VVELIQPVACDQGMRXAI 3 VVELI PVAC+QGMR AI Sbjct: 451 VVELIMPVACEQGMRFAI 468
>EFTU_ARATH (P17745) Elongation factor Tu, chloroplast precursor (EF-Tu)| Length = 476 Score = 32.7 bits (73), Expect = 0.30 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = -3 Query: 56 VVELIQPVACDQGMRXAI 3 VVELI PVAC+QGMR AI Sbjct: 442 VVELIVPVACEQGMRFAI 459
>EFTU2_SOYBN (P46280) Elongation factor Tu, chloroplast precursor (EF-Tu)| Length = 479 Score = 32.7 bits (73), Expect = 0.30 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = -3 Query: 56 VVELIQPVACDQGMRXAI 3 VVELI PVAC+QGMR AI Sbjct: 445 VVELIVPVACEQGMRFAI 462
>EFTU1_SOYBN (Q43467) Elongation factor Tu, chloroplast precursor (EF-Tu)| Length = 479 Score = 32.7 bits (73), Expect = 0.30 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = -3 Query: 56 VVELIQPVACDQGMRXAI 3 VVELI PVAC+QGMR AI Sbjct: 445 VVELIVPVACEQGMRFAI 462
>EFTU_NEPOL (Q9TKZ5) Elongation factor Tu (EF-Tu)| Length = 410 Score = 29.6 bits (65), Expect = 2.6 Identities = 13/18 (72%), Positives = 16/18 (88%) Frame = -3 Query: 56 VVELIQPVACDQGMRXAI 3 VVELIQP+A ++GMR AI Sbjct: 376 VVELIQPIAIEKGMRFAI 393
>EFTU_CHLVU (P56292) Elongation factor Tu (EF-Tu)| Length = 409 Score = 29.3 bits (64), Expect = 3.3 Identities = 12/18 (66%), Positives = 16/18 (88%) Frame = -3 Query: 56 VVELIQPVACDQGMRXAI 3 +VELIQP+A ++GMR AI Sbjct: 375 IVELIQPIAIEKGMRFAI 392
>EFTU_ASTLO (P14634) Elongation factor Tu (EF-Tu)| Length = 409 Score = 28.9 bits (63), Expect = 4.4 Identities = 11/18 (61%), Positives = 16/18 (88%) Frame = -3 Query: 56 VVELIQPVACDQGMRXAI 3 +VEL+QP+A ++GMR AI Sbjct: 375 IVELVQPIAIEKGMRFAI 392
>EFTU_PEA (O24310) Elongation factor Tu, chloroplast precursor (EF-Tu)| Length = 488 Score = 28.9 bits (63), Expect = 4.4 Identities = 14/18 (77%), Positives = 15/18 (83%) Frame = -3 Query: 56 VVELIQPVACDQGMRXAI 3 VVELI PVA +QGMR AI Sbjct: 454 VVELIVPVAIEQGMRFAI 471
>EFTU_VIBVY (Q7MH43) Elongation factor Tu (EF-Tu)| Length = 394 Score = 28.5 bits (62), Expect = 5.7 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -3 Query: 56 VVELIQPVACDQGMRXAI 3 VVELI P+A D+G+R AI Sbjct: 360 VVELISPIAMDEGLRFAI 377
>EFTU_VIBVU (Q8DCQ7) Elongation factor Tu (EF-Tu)| Length = 394 Score = 28.5 bits (62), Expect = 5.7 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -3 Query: 56 VVELIQPVACDQGMRXAI 3 VVELI P+A D+G+R AI Sbjct: 360 VVELISPIAMDEGLRFAI 377
>EFTU_EUGGR (P02991) Elongation factor Tu (EF-Tu)| Length = 409 Score = 28.1 bits (61), Expect = 7.4 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -3 Query: 53 VELIQPVACDQGMRXAI 3 VELIQP+A ++GMR AI Sbjct: 376 VELIQPIAIEKGMRFAI 392
>EFTU_CYACA (Q9TLV8) Elongation factor Tu (EF-Tu)| Length = 410 Score = 28.1 bits (61), Expect = 7.4 Identities = 13/17 (76%), Positives = 14/17 (82%) Frame = -3 Query: 53 VELIQPVACDQGMRXAI 3 VELI PVA +QGMR AI Sbjct: 377 VELIHPVAIEQGMRFAI 393
>EFTU_VIBPA (Q877T5) Elongation factor Tu (EF-Tu)| Length = 394 Score = 28.1 bits (61), Expect = 7.4 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -3 Query: 56 VVELIQPVACDQGMRXAI 3 VVELI P+A D+G+R AI Sbjct: 360 VVELIAPIAMDEGLRFAI 377
>EFTU_SYNP7 (P33171) Elongation factor Tu (EF-Tu)| Length = 409 Score = 27.7 bits (60), Expect = 9.7 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = -3 Query: 53 VELIQPVACDQGMRXAI 3 VELI P+A +QGMR AI Sbjct: 376 VELINPIAIEQGMRFAI 392
>EFTU_SYNP6 (P18668) Elongation factor Tu (EF-Tu)| Length = 409 Score = 27.7 bits (60), Expect = 9.7 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = -3 Query: 53 VELIQPVACDQGMRXAI 3 VELI P+A +QGMR AI Sbjct: 376 VELINPIAIEQGMRFAI 392
>EFTU_ANASP (Q8YP63) Elongation factor Tu (EF-Tu)| Length = 409 Score = 27.7 bits (60), Expect = 9.7 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = -3 Query: 53 VELIQPVACDQGMRXAI 3 VELI P+A +QGMR AI Sbjct: 376 VELINPIAIEQGMRFAI 392
>EFTU_MESVI (Q9MUP0) Elongation factor Tu (EF-Tu)| Length = 410 Score = 27.7 bits (60), Expect = 9.7 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -3 Query: 56 VVELIQPVACDQGMRXAI 3 VV LIQP+A ++GMR AI Sbjct: 376 VVSLIQPIAIEKGMRFAI 393
>EFTU_MYCTU (P0A558) Elongation factor Tu (EF-Tu)| Length = 396 Score = 27.7 bits (60), Expect = 9.7 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -3 Query: 53 VELIQPVACDQGMRXAI 3 V+LIQPVA D+G+R AI Sbjct: 363 VKLIQPVAMDEGLRFAI 379
>EFTU_MYCBO (P0A559) Elongation factor Tu (EF-Tu)| Length = 396 Score = 27.7 bits (60), Expect = 9.7 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -3 Query: 53 VELIQPVACDQGMRXAI 3 V+LIQPVA D+G+R AI Sbjct: 363 VKLIQPVAMDEGLRFAI 379
>EFTU_SYNY3 (P74227) Elongation factor Tu (EF-Tu)| Length = 399 Score = 27.7 bits (60), Expect = 9.7 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = -3 Query: 53 VELIQPVACDQGMRXAI 3 VELI P+A +QGMR AI Sbjct: 366 VELINPIAIEQGMRFAI 382 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.117 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,986,900 Number of Sequences: 219361 Number of extensions: 38224 Number of successful extensions: 230 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 228 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 230 length of database: 80,573,946 effective HSP length: 0 effective length of database: 80,573,946 effective search space used: 1933774704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
