ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466528.1| Oryza sativa (japonica cultivar-group), mRNA 86 1e-14
2ref|XM_466527.1| Oryza sativa (japonica cultivar-group), mRNA 86 1e-14
3ref|XM_507491.1| PREDICTED Oryza sativa (japonica cultivar-group... 86 1e-14
4ref|XM_506850.2| PREDICTED Oryza sativa (japonica cultivar-group... 86 1e-14
5gb|AF327413.1|AF327413 Oryza sativa translational elongation fac... 86 1e-14
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-14
7dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-14
8dbj|AK119587.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-14
9dbj|AK104785.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-14
10dbj|AK066858.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-14
11dbj|AK064937.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-14
12gb|AF145053.1|AF145053 Oryza sativa chloroplast translational el... 84 4e-14
13gb|AY105509.1| Zea mays PCO100031 mRNA sequence 62 1e-07
14gb|BT018667.1| Zea mays clone EL01N0510C05.d mRNA sequence 60 6e-07
15emb|Y15107.1|GMTUFA2 Glycine max tufA2 gene 50 5e-04
16emb|AL929433.10| Mouse DNA sequence from clone RP23-193M23 on ch... 46 0.008
17gb|AY488027.1| Capsicum annuum elongation factor TuB mRNA, parti... 44 0.034
18emb|Y15108.1|GMTUFB2 Glycine max tufB2 gene 44 0.034
19emb|X89058.1|GMRNAEFTU G.max DNA for EF-Tu chloroplast specific ... 44 0.034
20emb|X66062.1|GMTUFA G.max tufA gene for chloroplast translation ... 42 0.13
21emb|AL663096.16| Mouse DNA sequence from clone RP23-249K18 on ch... 38 2.1
22gb|AC124036.5| Mus Musculus Strain C57BL6/J chromosome 11 BAC Cl... 38 2.1
23gb|AC147240.3| Mus musculus BAC clone RP23-398F20 from 10, compl... 38 2.1
24gb|AC165159.2| Mus musculus BAC clone RP23-234N1 from chromosome... 38 2.1
25emb|AL807402.1|CNS08CA6 Mus musculus chromosome 11 region in the... 38 2.1
26gb|AC133583.13| Mus musculus chromosome 12, clone RP24-444A9, co... 36 8.2
27emb|CR718816.2|CNS0GHL2 Tetraodon nigroviridis full-length cDNA 36 8.2
28gb|AC156398.13| Mus musculus 6 BAC RP24-279F16 (Roswell Park Can... 36 8.2
29emb|AL607077.4| Human DNA sequence from clone RP11-374I15 on chr... 36 8.2
30emb|AL390789.13| Human DNA sequence from clone RP11-572N15 on ch... 36 8.2
31gb|AC108729.8| Homo sapiens 3 BAC RP11-639F1 (Roswell Park Cance... 36 8.2
32emb|AL121806.2|DMBR42I17 Drosophila melanogaster BAC clone BACR4... 36 8.2
33dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 36 8.2
34gb|AY121628.1| Drosophila melanogaster GH24653 full insert cDNA 36 8.2
35dbj|AB232919.1| Oryzias latipes hox gene cluster, complete cds, ... 36 8.2
36ref|NM_138988.2| Drosophila melanogaster A3-3 CG11405-RA (A3-3),... 36 8.2
37gb|AC104410.3| Drosophila melanogaster X BAC RP98-10H22 (Roswell... 36 8.2
38gb|AC154636.2| Mus musculus BAC clone RP23-302E1 from chromosome... 36 8.2
39dbj|AK053629.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 36 8.2
40gb|AY760071.1| Muntiacus muntjak vaginalis DNA-dependent protein... 36 8.2
41gb|AC007909.8| Homo sapiens chromosome 16 clone RP11-515G11, com... 36 8.2
42gb|AC007366.4|AC007366 Homo sapiens BAC clone RP11-501G22 from X... 36 8.2
43gb|AC158477.2| Postia placenta clone JGIACWS-5N20, complete sequ... 36 8.2
44gb|AC158470.1| Postia placenta clone JGIACWS-5E10, complete sequ... 36 8.2
45gb|AC154630.2| Mus musculus BAC clone RP23-319C8 from 9, complet... 36 8.2
46gb|AE003420.2| Drosophila melanogaster chromosome X, section 4 o... 36 8.2
47gb|AC133866.14| Mus musculus chromosome 12, clone RP24-478O24, c... 36 8.2
48emb|AL837508.21| Mouse DNA sequence from clone RP23-256C7 on chr... 36 8.2
49gb|AC174447.2| Mus musculus BAC clone RP23-377C21 from chromosom... 36 8.2
50gb|AC148328.3| Mus musculus BAC clone RP24-329C11 from 9, comple... 36 8.2
51emb|AL035331.1|DMC33C11 Drosophila melanogaster cosmid clone 33C11 36 8.2 
>ref|XM_466528.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 900

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                     
Query: 1   cggatggcnaacctcattccctggtcacaagccacaggctggatgagctccacaacca 58
           |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 686 cggatggcaaacctcattccctgctcacaagcgacgggctggatgagctccacaacca 629
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>ref|XM_466527.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1614

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                      
Query: 1    cggatggcnaacctcattccctggtcacaagccacaggctggatgagctccacaacca 58
            |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 1383 cggatggcaaacctcattccctgctcacaagcgacgggctggatgagctccacaacca 1326
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>ref|XM_507491.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1126_D09.31-2
            mRNA
          Length = 1701

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                      
Query: 1    cggatggcnaacctcattccctggtcacaagccacaggctggatgagctccacaacca 58
            |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 1384 cggatggcaaacctcattccctgctcacaagcgacgggctggatgagctccacaacca 1327
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>ref|XM_506850.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1126_D09.31-2
            mRNA
          Length = 1894

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                      
Query: 1    cggatggcnaacctcattccctggtcacaagccacaggctggatgagctccacaacca 58
            |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 1455 cggatggcaaacctcattccctgctcacaagcgacgggctggatgagctccacaacca 1398
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>gb|AF327413.1|AF327413 Oryza sativa translational elongation factor Tu (tufA) gene, complete
            cds; nuclear gene for chloroplast product
          Length = 2050

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                      
Query: 1    cggatggcnaacctcattccctggtcacaagccacaggctggatgagctccacaacca 58
            |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 1460 cggatggcaaacctcattccctgctcacaagcgacgggctggatgagctccacaacca 1403
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                          
Query: 1        cggatggcnaacctcattccctggtcacaagccacaggctggatgagctccacaacca 58
                |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 23132784 cggatggcaaacctcattccctgctcacaagcgacgggctggatgagctccacaacca 23132727
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>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1126_D09
          Length = 138615

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                       
Query: 1     cggatggcnaacctcattccctggtcacaagccacaggctggatgagctccacaacca 58
             |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 99822 cggatggcaaacctcattccctgctcacaagcgacgggctggatgagctccacaacca 99765
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>dbj|AK119587.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-C11, full
            insert sequence
          Length = 1894

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                      
Query: 1    cggatggcnaacctcattccctggtcacaagccacaggctggatgagctccacaacca 58
            |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 1455 cggatggcaaacctcattccctgctcacaagcgacgggctggatgagctccacaacca 1398
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>dbj|AK104785.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-D07, full
            insert sequence
          Length = 1614

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                      
Query: 1    cggatggcnaacctcattccctggtcacaagccacaggctggatgagctccacaacca 58
            |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 1383 cggatggcaaacctcattccctgctcacaagcgacgggctggatgagctccacaacca 1326
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>dbj|AK066858.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084O08, full
           insert sequence
          Length = 899

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                     
Query: 1   cggatggcnaacctcattccctggtcacaagccacaggctggatgagctccacaacca 58
           |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 685 cggatggcaaacctcattccctgctcacaagcgacgggctggatgagctccacaacca 628
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>dbj|AK064937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P03, full
            insert sequence
          Length = 1700

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                      
Query: 1    cggatggcnaacctcattccctggtcacaagccacaggctggatgagctccacaacca 58
            |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 1383 cggatggcaaacctcattccctgctcacaagcgacgggctggatgagctccacaacca 1326
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>gb|AF145053.1|AF145053 Oryza sativa chloroplast translational elongation factor Tu (tufA)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1678

 Score = 83.8 bits (42), Expect = 4e-14
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                     
Query: 2    ggatggcnaacctcattccctggtcacaagccacaggctggatgagctccacaacca 58
            ||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 1412 ggatggcaaacctcattccctgctcacaagcgacgggctggatgagctccacaacca 1356
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>gb|AY105509.1| Zea mays PCO100031 mRNA sequence
          Length = 1193

 Score = 61.9 bits (31), Expect = 1e-07
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                     
Query: 1   cggatggcnaacctcattccctggtcacaagccacaggctggatgagctccacaacca 58
           ||||| || |||||||| ||||| |||||||| ||||||||||||||||  |||||||
Sbjct: 904 cggatagcaaacctcataccctgctcacaagcaacaggctggatgagctgaacaacca 847
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>gb|BT018667.1| Zea mays clone EL01N0510C05.d mRNA sequence
          Length = 2057

 Score = 60.0 bits (30), Expect = 6e-07
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 1    cggatggcnaacctcattccctggtcacaagccacaggctggatgagct 49
            ||||| || |||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 1343 cggatagcaaacctcataccctgctcacaagcaacaggctggatgagct 1295
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>emb|Y15107.1|GMTUFA2 Glycine max tufA2 gene
          Length = 890

 Score = 50.1 bits (25), Expect = 5e-04
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 10  aacctcattccctggtcacaagccacaggctggatgagctccacaacca 58
           |||||||||||||| || ||||||||||||   ||||||||||| ||||
Sbjct: 686 aacctcattccctgttcgcaagccacaggcacaatgagctccaccacca 638
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>emb|AL929433.10| Mouse DNA sequence from clone RP23-193M23 on chromosome 4, complete
             sequence
          Length = 198426

 Score = 46.1 bits (23), Expect = 0.008
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 19    ccctggtcacaagccacaggctggatg 45
             |||||||||||||||||||| ||||||
Sbjct: 95755 ccctggtcacaagccacaggatggatg 95781
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>gb|AY488027.1| Capsicum annuum elongation factor TuB mRNA, partial sequence
          Length = 391

 Score = 44.1 bits (22), Expect = 0.034
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                        
Query: 10 aacctcattccctggtcacaagccacaggc 39
          |||||||||||||| |||||||| ||||||
Sbjct: 63 aacctcattccctgctcacaagcaacaggc 34
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>emb|Y15108.1|GMTUFB2 Glycine max tufB2 gene
          Length = 1337

 Score = 44.1 bits (22), Expect = 0.034
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 10  aacctcattccctggtcacaagccacaggc 39
           ||||||||||| || |||||||||||||||
Sbjct: 981 aacctcattccttgttcacaagccacaggc 952
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>emb|X89058.1|GMRNAEFTU G.max DNA for EF-Tu chloroplast specific protein
          Length = 3079

 Score = 44.1 bits (22), Expect = 0.034
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 10   aacctcattccctggtcacaagccacaggc 39
            ||||||||||| || |||||||||||||||
Sbjct: 2597 aacctcattccttgttcacaagccacaggc 2568
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>emb|X66062.1|GMTUFA G.max tufA gene for chloroplast translation elongation factor EF-Tu
          Length = 2313

 Score = 42.1 bits (21), Expect = 0.13
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 10   aacctcattccctggtcacaagccacagg 38
            |||||||||||||| || |||||||||||
Sbjct: 2088 aacctcattccctgttcgcaagccacagg 2060
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>emb|AL663096.16| Mouse DNA sequence from clone RP23-249K18 on chromosome 11 Contains two
             novel genes, the gene for a novel protein similar to human
             GAS2-related protein, the Mmp28 gene for matrix
             metalloproteinase 28 (epilysin), the 5' end of the Taf15
             gene for TAF15 RNA polymerase II TATA box binding protein
             (TBP)-associated factor and a CpG island, complete
             sequence
          Length = 86442

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    ggtcacaagccacaggctg 41
             |||||||||||||||||||
Sbjct: 10661 ggtcacaagccacaggctg 10643
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>gb|AC124036.5| Mus Musculus Strain C57BL6/J chromosome 11 BAC Clone RP24-100D7, Complete
              Sequence, complete sequence
          Length = 228907

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 23     ggtcacaagccacaggctg 41
              |||||||||||||||||||
Sbjct: 161002 ggtcacaagccacaggctg 160984
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>gb|AC147240.3| Mus musculus BAC clone RP23-398F20 from 10, complete sequence
          Length = 195921

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    ggtcacaagccacaggctg 41
             |||||||||||||||||||
Sbjct: 21029 ggtcacaagccacaggctg 21047
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>gb|AC165159.2| Mus musculus BAC clone RP23-234N1 from chromosome 13, complete sequence
          Length = 215158

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    ggtcacaagccacaggctg 41
             |||||||||||||||||||
Sbjct: 86190 ggtcacaagccacaggctg 86208
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>emb|AL807402.1|CNS08CA6 Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
             clone 437H9 of library RPCI-23 from chromosome 11 of
             strain C57Bl/6 of Mus musculus (mouse)
          Length = 205701

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    ggtcacaagccacaggctg 41
             |||||||||||||||||||
Sbjct: 56713 ggtcacaagccacaggctg 56695
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>gb|AC133583.13| Mus musculus chromosome 12, clone RP24-444A9, complete sequence
          Length = 123042

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 18    tccctggtcacaagccac 35
             ||||||||||||||||||
Sbjct: 26396 tccctggtcacaagccac 26413
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>emb|CR718816.2|CNS0GHL2 Tetraodon nigroviridis full-length cDNA
          Length = 611

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 37  ggctggatgagctccaca 54
           ||||||||||||||||||
Sbjct: 157 ggctggatgagctccaca 140
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>gb|AC156398.13| Mus musculus 6 BAC RP24-279F16 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 170925

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 19     ccctggtcacaagccacaggct 40
              ||||||||| ||||||||||||
Sbjct: 131275 ccctggtcagaagccacaggct 131296
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>emb|AL607077.4| Human DNA sequence from clone RP11-374I15 on chromosome 6 Contains a
              pseudogene similar to part of acalsia, adrenocortical
              insufficiency, alacrimia (Allgrove, triple-A) (AAAS),
              complete sequence
          Length = 175466

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 16     attccctggtcacaagccacag 37
              |||||||| |||||||||||||
Sbjct: 168761 attccctgatcacaagccacag 168740
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>emb|AL390789.13| Human DNA sequence from clone RP11-572N15 on chromosome 6, complete
             sequence
          Length = 147434

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 16    attccctggtcacaagccacag 37
             |||||||| |||||||||||||
Sbjct: 15392 attccctgatcacaagccacag 15371
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>gb|AC108729.8| Homo sapiens 3 BAC RP11-639F1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 124882

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 31    gccacaggctggatgagc 48
             ||||||||||||||||||
Sbjct: 67447 gccacaggctggatgagc 67430
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>emb|AL121806.2|DMBR42I17 Drosophila melanogaster BAC clone BACR42I17
          Length = 155168

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 28     caagccacaggctggatg 45
              ||||||||||||||||||
Sbjct: 137286 caagccacaggctggatg 137303
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 27      acaagccacaggctggatgagc 48
               |||||| |||||||||||||||
Sbjct: 1823167 acaagcgacaggctggatgagc 1823188
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>gb|AY121628.1| Drosophila melanogaster GH24653 full insert cDNA
          Length = 5278

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 28   caagccacaggctggatg 45
            ||||||||||||||||||
Sbjct: 2620 caagccacaggctggatg 2603
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>dbj|AB232919.1| Oryzias latipes hox gene cluster, complete cds, contains hoxAb
          Length = 240727

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 32    ccacaggctggatgagct 49
             ||||||||||||||||||
Sbjct: 84583 ccacaggctggatgagct 84600
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>ref|NM_138988.2| Drosophila melanogaster A3-3 CG11405-RA (A3-3), mRNA
          Length = 5266

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 28   caagccacaggctggatg 45
            ||||||||||||||||||
Sbjct: 2619 caagccacaggctggatg 2602
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>gb|AC104410.3| Drosophila melanogaster X BAC RP98-10H22 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179869

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 28     caagccacaggctggatg 45
              ||||||||||||||||||
Sbjct: 152125 caagccacaggctggatg 152142
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>gb|AC154636.2| Mus musculus BAC clone RP23-302E1 from chromosome 12, complete sequence
          Length = 179631

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 23     ggtcacaagccacaggct 40
              ||||||||||||||||||
Sbjct: 151868 ggtcacaagccacaggct 151851
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>dbj|AK053629.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length
          enriched library, clone:E130116A14 product:weakly
          similar to membrane-type frizzled-related protein [Homo
          sapiens], full insert sequence
          Length = 4256

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 18 tccctggtcacaagccac 35
          ||||||||||||||||||
Sbjct: 61 tccctggtcacaagccac 44
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>gb|AY760071.1| Muntiacus muntjak vaginalis DNA-dependent protein kinase catalytic
           subunit (PRKDC) mRNA, partial cds
          Length = 668

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 38  gctggatgagctccacaa 55
           ||||||||||||||||||
Sbjct: 378 gctggatgagctccacaa 361
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>gb|AC007909.8| Homo sapiens chromosome 16 clone RP11-515G11, complete sequence
          Length = 183149

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 35    caggctggatgagctcca 52
             ||||||||||||||||||
Sbjct: 81162 caggctggatgagctcca 81145
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>gb|AC007366.4|AC007366 Homo sapiens BAC clone RP11-501G22 from Xq23, complete sequence
          Length = 61434

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 32    ccacaggctggatgagctccac 53
             ||||||||||| ||||||||||
Sbjct: 47011 ccacaggctgggtgagctccac 47032
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>gb|AC158477.2| Postia placenta clone JGIACWS-5N20, complete sequence
          Length = 31661

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 25    tcacaagccacaggctggatga 46
             ||||||||||||||| ||||||
Sbjct: 14426 tcacaagccacaggcaggatga 14405
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>gb|AC158470.1| Postia placenta clone JGIACWS-5E10, complete sequence
          Length = 33410

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 25    tcacaagccacaggctggatga 46
             ||||||||||||||| ||||||
Sbjct: 11147 tcacaagccacaggcaggatga 11168
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>gb|AC154630.2| Mus musculus BAC clone RP23-319C8 from 9, complete sequence
          Length = 182834

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    aacctcattccctggtca 27
             ||||||||||||||||||
Sbjct: 15167 aacctcattccctggtca 15184
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>gb|AE003420.2| Drosophila melanogaster chromosome X, section 4 of 74 of the complete
             sequence
          Length = 308311

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 28    caagccacaggctggatg 45
             ||||||||||||||||||
Sbjct: 93368 caagccacaggctggatg 93385
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>gb|AC133866.14| Mus musculus chromosome 12, clone RP24-478O24, complete sequence
          Length = 187626

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    tccctggtcacaagccac 35
             ||||||||||||||||||
Sbjct: 16724 tccctggtcacaagccac 16707
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>emb|AL837508.21| Mouse DNA sequence from clone RP23-256C7 on chromosome 4, complete
             sequence
          Length = 158009

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 32    ccacaggctggatgagct 49
             ||||||||||||||||||
Sbjct: 40030 ccacaggctggatgagct 40013
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>gb|AC174447.2| Mus musculus BAC clone RP23-377C21 from chromosome 9, complete sequence
          Length = 170748

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     aacctcattccctggtca 27
              ||||||||||||||||||
Sbjct: 109403 aacctcattccctggtca 109420
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>gb|AC148328.3| Mus musculus BAC clone RP24-329C11 from 9, complete sequence
          Length = 167164

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    tccctggtcacaagccac 35
             ||||||||||||||||||
Sbjct: 93309 tccctggtcacaagccac 93292
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>emb|AL035331.1|DMC33C11 Drosophila melanogaster cosmid clone 33C11
          Length = 37005

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 28    caagccacaggctggatg 45
             ||||||||||||||||||
Sbjct: 14350 caagccacaggctggatg 14333


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 358,003
Number of Sequences: 3902068
Number of extensions: 358003
Number of successful extensions: 22668
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22602
Number of HSP's gapped (non-prelim): 66
length of query: 58
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 37
effective length of database: 17,151,101,840
effective search space: 634590768080
effective search space used: 634590768080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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