ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5g21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 965 bits (487), Expect = 0.0 Identities = 512/519 (98%), Gaps = 1/519 (0%) Strand = Plus / Plus Query: 1 tttaaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcc 60 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct: 76966 tttaaaacatatacgtaaaacacaatctactaa-attaattctttgatctcaatttcgcc 77024 Query: 61 tactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctct 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 77025 tactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaatcctct 77084 Query: 121 caattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaat 180 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 77085 caattcctcggcaatcgcgccaaaaactcgagttccttttggattgcctttttgatcaat 77144 Query: 181 tataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattcttt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 77145 tataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaactcttt 77204 Query: 241 acatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77205 acatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaa 77264 Query: 301 tgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77265 tgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagc 77324 Query: 361 agctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaa 420 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 77325 agctcctatgactcgaatacacatcaattttcgagctccactattatcggctacatttaa 77384 Query: 421 aagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77385 aagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagga 77444 Query: 481 tgaaagaaatattgtctttccagaaagaaaaaccgggca 519 ||||||||||||||||||||||||||||||||||||||| Sbjct: 77445 tgaaagaaatattgtctttccagaaagaaaaaccgggca 77483 Score = 137 bits (69), Expect = 5e-29 Identities = 69/69 (100%) Strand = Plus / Plus Query: 528 cttccataccccttttagggttctatatctctaatcgaataaattgacttcgtatgggca 587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77496 cttccataccccttttagggttctatatctctaatcgaataaattgacttcgtatgggca 77555 Query: 588 ttttactgg 596 ||||||||| Sbjct: 77556 ttttactgg 77564
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 829 bits (418), Expect = 0.0 Identities = 552/597 (92%), Gaps = 3/597 (0%) Strand = Plus / Plus Query: 1 tttaaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcc 60 |||||| ||||||||| | ||||||||||||||| || |||||||||||| || ||| | Sbjct: 72 tttaaagcatatacgtgagacacaatctactaatttt--ttctttgatctatatctcgtc 129 Query: 61 tactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctct 120 |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct: 130 tactagtatttataatacttcaggagctaatgaaactattttagtataattcaattctct 189 Query: 121 caattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaat 180 ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 190 taattcttcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaat 249 Query: 181 tataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattcttt 240 ||||| || ||||||||||||||||| |||||||||||||| |||| |||||||||||| Sbjct: 250 gataactgctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattcttt 309 Query: 241 acatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaa 300 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 310 acgtgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcac 369 Query: 301 tgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagc 360 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 370 tgcgtctttgattacagcaataataacatcaccaatacgagcatatcgctgattaccagc 429 Query: 361 agctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaa 420 ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 430 ggctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaa 489 Query: 421 aagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagga 480 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 490 aagggtctgaggttgaatcatattattttgatttccatttgttatttcaatgcaaaagga 549 Query: 481 tgaaagaaatattgtctttccagaaagaaaaaccgggcannnnnnnncttccatacccct 540 |||||||||||||||||||||||||||||||||| || |||| |||| ||| Sbjct: 550 tgaaagaaatattgtctttccagaaagaaaaaccaggggttttttatcttcaatactcct 609 Query: 541 -tttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 610 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactgg 666
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 829 bits (418), Expect = 0.0 Identities = 552/597 (92%), Gaps = 3/597 (0%) Strand = Plus / Plus Query: 1 tttaaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcc 60 |||||| ||||||||| | ||||||||||||||| || |||||||||||| || ||| | Sbjct: 79629 tttaaagcatatacgtgagacacaatctactaatttt--ttctttgatctatatctcgtc 79686 Query: 61 tactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctct 120 |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct: 79687 tactagtatttataatacttcaggagctaatgaaactattttagtataattcaattctct 79746 Query: 121 caattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaat 180 ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 79747 taattcttcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaat 79806 Query: 181 tataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattcttt 240 ||||| || ||||||||||||||||| |||||||||||||| |||| |||||||||||| Sbjct: 79807 gataactgctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattcttt 79866 Query: 241 acatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaa 300 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79867 acgtgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcac 79926 Query: 301 tgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagc 360 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 79927 tgcgtctttgattacagcaataataacatcaccaatacgagcatatcgctgattaccagc 79986 Query: 361 agctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaa 420 ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 79987 ggctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaa 80046 Query: 421 aagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagga 480 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 80047 aagggtctgaggttgaatcatattattttgatttccatttgttatttcaatgcaaaagga 80106 Query: 481 tgaaagaaatattgtctttccagaaagaaaaaccgggcannnnnnnncttccatacccct 540 |||||||||||||||||||||||||||||||||| || |||| |||| ||| Sbjct: 80107 tgaaagaaatattgtctttccagaaagaaaaaccaggggttttttatcttcaatactcct 80166 Query: 541 -tttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 80167 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactgg 80223
>ref|XM_481018.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 787 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 730 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 729 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 670 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 669 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 610 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 609 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 550 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 549 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 490 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 489 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 430 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 429 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 370 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 310 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 309 aaagaaatattgtctttccagaaagaagaacc 278 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 239 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 194
>ref|XM_481019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2157 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1529 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1472 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1471 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1412 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1411 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1352 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1351 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1292 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1291 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 1232 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1231 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 1172 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 1171 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 1112 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1111 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 1052 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 1051 aaagaaatattgtctttccagaaagaagaacc 1020 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 981 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 936
>ref|XM_507181.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0036E18.24 mRNA Length = 2157 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1529 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1472 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1471 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1412 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1411 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1352 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1351 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1292 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1291 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 1232 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1231 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 1172 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 1171 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 1112 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1111 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 1052 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 1051 aaagaaatattgtctttccagaaagaagaacc 1020 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 981 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 936
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 77196 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 77253 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 77254 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 77313 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 77314 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 77373 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 77374 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 77433 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77434 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 77493 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 77494 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 77553 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 77554 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 77613 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77614 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 77673 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 77674 aaagaaatattgtctttccagaaagaagaacc 77705 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 77743 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 77788
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 77196 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 77253 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 77254 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 77313 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 77314 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 77373 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 77374 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 77433 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77434 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 77493 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 77494 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 77553 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 77554 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 77613 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77614 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 77673 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 77674 aaagaaatattgtctttccagaaagaagaacc 77705 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 77743 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 77788
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 77137 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 77194 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 77195 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 77254 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 77255 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 77314 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 77315 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 77374 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77375 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 77434 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 77435 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 77494 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 77495 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 77554 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77555 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 77614 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 77615 aaagaaatattgtctttccagaaagaagaacc 77646 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 77687 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 77732
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 53207 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 53264 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 53265 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 53324 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 53325 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 53384 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 53385 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 53444 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 53445 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 53504 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 53505 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 53564 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 53565 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 53624 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53625 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 53684 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 53685 aaagaaatattgtctttccagaaagaagaacc 53716 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 53754 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 53799
>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07, complete sequence Length = 136858 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 126035 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 126092 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 126093 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 126152 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 126153 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 126212 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 126213 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 126272 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 126273 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 126332 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 126333 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 126392 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 126393 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 126452 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126453 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 126512 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 126513 aaagaaatattgtctttccagaaagaagaacc 126544 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 126582 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 126627
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 77183 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 77240 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 77241 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 77300 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 77301 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 77360 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 77361 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 77420 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77421 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 77480 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 77481 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 77540 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 77541 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 77600 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77601 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 77660 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 77661 aaagaaatattgtctttccagaaagaagaacc 77692 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 77730 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 77775
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 73597 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 73540 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 73539 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 73480 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 73479 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 73420 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 73419 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 73360 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 73359 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 73300 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 73299 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 73240 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 73239 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 73180 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73179 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 73120 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 73119 aaagaaatattgtctttccagaaagaagaacc 73088 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 73009 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 72964 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatggg 585 ||||| ||||| |||| |||||||||||||||||| Sbjct: 73049 tatatttctaaccgaagaaattgacttcgtatggg 73015
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 75384 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 75441 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 75442 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 75501 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 75502 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 75561 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 75562 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 75621 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 75622 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 75681 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 75682 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 75741 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 75742 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 75801 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75802 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 75861 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 75862 aaagaaatattgtctttccagaaagaagaacc 75893 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 75932 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 75977
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 9448 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 9505 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 9506 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 9565 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 9566 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 9625 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 9626 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 9685 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 9686 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 9745 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 9746 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 9805 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 9806 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 9865 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9866 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 9925 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 9926 aaagaaatattgtctttccagaaagaagaacc 9957 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 9996 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 10041
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 9192524 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 9192467 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 9192466 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 9192407 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 9192406 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 9192347 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 9192346 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 9192287 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 9192286 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 9192227 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 9192226 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 9192167 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 9192166 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 9192107 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9192106 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 9192047 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 9192046 aaagaaatattgtctttccagaaagaagaacc 9192015 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 9115571 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 9115514 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 9115513 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 9115454 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 9115453 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 9115394 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 9115393 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 9115334 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 9115333 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 9115274 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 9115273 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 9115214 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 9115213 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 9115154 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9115153 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 9115094 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 9115093 aaagaaatattgtctttccagaaagaagaacc 9115062 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 246 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggg 296 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 17722552 tacgtacaattacagctcaaattacttcggatctttccagaggcatttggg 17722502 Score = 77.8 bits (39), Expect = 4e-11 Identities = 73/84 (86%), Gaps = 4/84 (4%) Strand = Plus / Plus Query: 237 ctttacatgtacgtacaattacagctcgaattact----tcggatctttctagaggcatt 292 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 2072703 ctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcatt 2072762 Query: 293 tggggcaatgcgtctttgattaca 316 | ||||| ||| |||||| ||||| Sbjct: 2072763 ttgggcactgcttctttggttaca 2072786 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 9191936 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 9191891 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 9114983 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 9114938 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatggg 585 ||||| ||||| |||| |||||||||||||||||| Sbjct: 9191976 tatatttctaaccgaagaaattgacttcgtatggg 9191942 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatggg 585 ||||| ||||| |||| |||||||||||||||||| Sbjct: 9115023 tatatttctaaccgaagaaattgacttcgtatggg 9114989
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 10368992 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 10369049 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 10369050 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 10369109 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 10369110 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 10369169 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 10369170 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 10369229 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 10369230 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 10369289 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 10369290 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 10369349 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 10369350 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 10369409 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10369410 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 10369469 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 10369470 aaagaaatattgtctttccagaaagaagaacc 10369501 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 229 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 284 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 14021582 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 14021523 Query: 285 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 344 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14021522 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 14021463 Query: 345 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 389 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 14021462 atcagtgattac---cagctcctaagattcgaatacatatcaatt 14021421 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 10369540 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 10369585
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 9259866 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 9259809 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 9259808 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 9259749 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 9259748 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 9259689 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 9259688 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 9259629 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 9259628 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 9259569 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 9259568 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 9259509 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 9259508 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 9259449 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9259448 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 9259389 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 9259388 aaagaaatattgtctttccagaaagaagaacc 9259357 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 169 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 228 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 10791213 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 10791154 Query: 229 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 288 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 10791153 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 10791094 Query: 289 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 338 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10791093 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 10791044 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 17206218 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 17206277 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 17206278 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 17206336 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 17206337 actgttgtcatagcgtattattataccgtcttcgcatttgaa 17206378 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 9259318 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 9259273
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 12755748 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 12755805 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 12755806 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 12755865 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 12755866 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 12755925 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 12755926 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 12755985 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 12755986 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 12756045 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 12756046 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 12756105 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 12756106 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 12756165 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12756166 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 12756225 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 12756226 aaagaaatattgtctttccagaaagaagaacc 12756257 Score = 763 bits (385), Expect = 0.0 Identities = 481/512 (93%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 19545833 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 19545776 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 19545775 ctagtatttataatacttcaggagctaatgaaactagtttagtaaaattcaattctctca 19545716 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||| | |||| ||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 19545715 attcctcgacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatcaatga 19545656 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 19545655 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 19545596 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 19545595 atgtacgtacaattacagctcgaattacttgagatctttctagaggcatttggggcactg 19545536 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 19545535 cgtctttgattacagcaacaataacatcaccaatacgagcatattgctgattactagcag 19545476 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 19545475 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 19545416 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19545415 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 19545356 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 19545355 aaagaaatattgtctttccagaaagaagaacc 19545324 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 184 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 243 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 3036155 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 3036096 Query: 244 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 3036095 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 3036036 Query: 304 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 363 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 3036035 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 3035976 Query: 364 tcctatgactcgaatacacat 384 ||||||||||||||||||||| Sbjct: 3035975 tcctatgactcgaatacacat 3035955 Score = 174 bits (88), Expect = 2e-40 Identities = 235/280 (83%), Gaps = 3/280 (1%) Strand = Plus / Plus Query: 89 aatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaact 148 ||||||| |||||| || |||||||||||||||||||| |||| ||| ||||||||| Sbjct: 3109053 aatgaaattattttaatacaattcaattctctcaattcc-cggcgatcatgccaaaaacg 3109111 Query: 149 cgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcgg 208 |||| || ||||| || | ||||||||| || ||||||| | || || ||||||| Sbjct: 3109112 tgagtgccctttggatttcttttttgatcgatgataaccgttgtata-tcggcatagcgt 3109170 Query: 209 attattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatt 268 |||||||||| || ||| |||||||| ||||||||||||| || |||||| ||| |||| Sbjct: 3109171 attattatactgt-ttcacatttgaactctttacatgtacatataattacttctctaatt 3109229 Query: 269 acttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaataaca 328 |||| || ||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 3109230 actttgggtctttctagaggcatttggggcactgcatctttcattacagcaacaataaca 3109289 Query: 329 tcaccaatacgagcatatcgctgattaccagcagctccta 368 ||| ||||| |||||||| | ||||||| |||||| |||| Sbjct: 3109290 tcatcaatatgagcatattgttgattactagcagcaccta 3109329 Score = 107 bits (54), Expect = 4e-20 Identities = 60/62 (96%) Strand = Plus / Plus Query: 411 ctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaa 470 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 3109364 ctacatttaaaagggtttgaggttgaatcatattattttgatgtcaatttgttatttcaa 3109423 Query: 471 tg 472 || Sbjct: 3109424 tg 3109425 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 19545285 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 19545240 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 12756295 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 12756340 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 452 tttcaatttgttatttcaatgcaaa 476 ||||||||||| ||||||||||||| Sbjct: 4108954 tttcaatttgtaatttcaatgcaaa 4108978
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 71079 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 71022 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 71021 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 70962 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 70961 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 70902 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 70901 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 70842 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 70841 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 70782 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 70781 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 70722 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 70721 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 70662 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70661 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 70602 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 70601 aaagaaatattgtctttccagaaagaagaacc 70570 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 70531 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 70486
>dbj|AK105308.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B12, full insert sequence Length = 2166 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1537 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1480 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1479 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1420 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1419 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1360 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1359 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1300 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1299 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 1240 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1239 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 1180 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 1179 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 1120 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1119 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 1060 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 1059 aaagaaatattgtctttccagaaagaagaacc 1028 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 990 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 945
>dbj|AK071967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084G06, full insert sequence Length = 1764 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1752 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1695 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1694 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1635 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1634 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1575 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1574 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1515 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1514 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 1455 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1454 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 1395 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 1394 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 1335 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1334 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 1275 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 1274 aaagaaatattgtctttccagaaagaagaacc 1243 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 1205 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 1160
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 811 bits (409), Expect = 0.0 Identities = 487/512 (95%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 10375031 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 10375088 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 10375089 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 10375148 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 10375149 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 10375208 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 10375209 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 10375268 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 10375269 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 10375328 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 10375329 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 10375388 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 10375389 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 10375448 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10375449 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 10375508 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 10375509 aaagaaatattgtctttccagaaagaagaacc 10375540 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 229 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 284 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 14029824 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 14029765 Query: 285 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 344 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14029764 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 14029705 Query: 345 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 389 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 14029704 atcagtgattac---cagctcctaagattcgaatacatatcaatt 14029663 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 10375579 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 10375624
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 803 bits (405), Expect = 0.0 Identities = 486/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 5656646 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 5656703 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct: 5656704 ctagtatttataatacttcaggagctaatgaaactattgtagtaaaattcaattctctca 5656763 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 5656764 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 5656823 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 5656824 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 5656883 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 5656884 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 5656943 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 5656944 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 5657003 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 5657004 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 5657063 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5657064 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 5657123 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 5657124 aaagaaatattgtctttccagaaagaagaacc 5657155 Score = 391 bits (197), Expect = e-105 Identities = 260/280 (92%), Gaps = 2/280 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 20514158 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 20514215 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 20514216 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 20514275 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 20514276 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 20514335 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 20514336 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 20514395 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttc 282 |||||||||||||||||||||||||||||||||||||||| Sbjct: 20514396 atgtacgtacaattacagctcgaattacttcggatctttc 20514435 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 5657194 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 5657239 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 96 ctattttggtaaaattcaattctctcaattc 126 ||||||| ||||||||||||||||||||||| Sbjct: 25823760 ctattttagtaaaattcaattctctcaattc 25823730
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 803 bits (405), Expect = 0.0 Identities = 486/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 33496962 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 33497019 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 33497020 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 33497079 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 33497080 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 33497139 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 33497140 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 33497199 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 33497200 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 33497259 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 33497260 catctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 33497319 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 33497320 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 33497379 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33497380 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 33497439 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 33497440 aaagaaatattgtctttccagaaagaagaacc 33497471 Score = 145 bits (73), Expect = 2e-31 Identities = 160/189 (84%) Strand = Plus / Minus Query: 158 tttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattata 217 ||||| || |||||||||||||| ||||| | ||||||| | |||| | ||||||||| Sbjct: 30976459 tttggatttcctttttgatcaatgataacgactgcattgttgttatagagtattattata 30976400 Query: 218 ccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggat 277 |||| || ||||||||| || |||||||| | |||||||||| ||| ||||||| ||| Sbjct: 30976399 ccgtttttgcatttgaaatccatacatgtatgcacaattacagatcgtattacttttgat 30976340 Query: 278 ctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaata 337 |||||||||||||| | || || ||| ||||| ||||||||||||||||||||||||||| Sbjct: 30976339 ctttctagaggcatcttggacactgcatcttttattacagcaacaataacatcaccaata 30976280 Query: 338 cgagcatat 346 |||| |||| Sbjct: 30976279 cgagtatat 30976271 Score = 69.9 bits (35), Expect = 9e-09 Identities = 101/124 (81%), Gaps = 8/124 (6%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 199 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 39109319 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 39109268 Query: 200 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 259 ||||| || ||||| ||||||| || | ||||| |||||||||||||||||||||||| Sbjct: 39109267 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattact 39109208 Query: 260 gctc 263 |||| Sbjct: 39109207 gctc 39109204 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 33497509 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 33497554 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgat 176 ||||||||||||||||||||||| || |||| ||||| Sbjct: 39108053 ccaaaaactcgagttccttttggatttccttcttgat 39108017 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgat 176 ||||||||||||||||||||||| || |||| ||||| Sbjct: 39103979 ccaaaaactcgagttccttttggatttccttcttgat 39103943 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 acaatctactaatattaatt 41 |||||||||||||||||||| Sbjct: 32571860 acaatctactaatattaatt 32571879
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 803 bits (405), Expect = 0.0 Identities = 486/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 42159 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 42216 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 42217 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 42276 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 42277 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 42336 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 42337 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 42396 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 42397 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 42456 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 42457 catctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 42516 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 42517 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 42576 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42577 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 42636 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 42637 aaagaaatattgtctttccagaaagaagaacc 42668 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 42706 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 42751
>dbj|AK063122.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-E09, full insert sequence Length = 792 Score = 803 bits (405), Expect = 0.0 Identities = 486/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 786 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 729 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 728 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 669 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 668 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 609 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 608 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 549 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct: 548 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggagcactg 489 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 488 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 429 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 428 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 369 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 368 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 309 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 308 aaagaaatattgtctttccagaaagaagaacc 277 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 239 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 194
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 803 bits (405), Expect = 0.0 Identities = 486/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 5656639 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 5656696 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct: 5656697 ctagtatttataatacttcaggagctaatgaaactattgtagtaaaattcaattctctca 5656756 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 5656757 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 5656816 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 5656817 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 5656876 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 5656877 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 5656936 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 5656937 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 5656996 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 5656997 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 5657056 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5657057 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 5657116 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 5657117 aaagaaatattgtctttccagaaagaagaacc 5657148 Score = 391 bits (197), Expect = e-105 Identities = 260/280 (92%), Gaps = 2/280 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 20440372 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 20440429 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 20440430 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 20440489 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 20440490 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 20440549 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 20440550 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 20440609 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttc 282 |||||||||||||||||||||||||||||||||||||||| Sbjct: 20440610 atgtacgtacaattacagctcgaattacttcggatctttc 20440649 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 5657187 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 5657232 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 96 ctattttggtaaaattcaattctctcaattc 126 ||||||| ||||||||||||||||||||||| Sbjct: 25751936 ctattttagtaaaattcaattctctcaattc 25751906
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 803 bits (405), Expect = 0.0 Identities = 486/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 11169 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 11226 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct: 11227 ctagtatttataatacttcaggagctaatgaaactattgtagtaaaattcaattctctca 11286 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 11287 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 11346 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 11347 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 11406 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 11407 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 11466 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 11467 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 11526 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 11527 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 11586 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11587 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 11646 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 11647 aaagaaatattgtctttccagaaagaagaacc 11678 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 11717 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 11762
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 803 bits (405), Expect = 0.0 Identities = 486/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 77139 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 77196 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 77197 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 77256 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 77257 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 77316 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 77317 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 77376 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77377 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 77436 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 77437 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 77496 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 ||||||||||||||||||||||||||||||||||||| || || |||||||||||||||| Sbjct: 77497 ctcctatgactcgaatacacatcaattttcgagctccgctgttatctgctacatttaaaa 77556 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77557 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 77616 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 77617 aaagaaatattgtctttccagaaagaagaacc 77648 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 77687 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 77732
>ref|XM_479424.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 795 bits (401), Expect = 0.0 Identities = 485/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1527 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1470 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1469 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1410 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1409 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1350 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1349 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1290 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1289 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 1230 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1229 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 1170 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 ||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| Sbjct: 1169 ctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaa 1110 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1109 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 1050 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 |||||||||| |||||||||||||||| |||| Sbjct: 1049 aaagaaatatcgtctttccagaaagaagaacc 1018 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| || | |||||||||||||||||||||||| |||| Sbjct: 980 tatatttctaaccggagaaattgacttcgtatgggcattttgctgg 935
>ref|XM_479423.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 795 bits (401), Expect = 0.0 Identities = 485/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1527 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1470 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1469 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1410 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1409 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1350 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1349 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1290 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1289 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 1230 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1229 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 1170 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 ||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| Sbjct: 1169 ctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaa 1110 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1109 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 1050 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 |||||||||| |||||||||||||||| |||| Sbjct: 1049 aaagaaatatcgtctttccagaaagaagaacc 1018 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| || | |||||||||||||||||||||||| |||| Sbjct: 980 tatatttctaaccggagaaattgacttcgtatgggcattttgctgg 935
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 795 bits (401), Expect = 0.0 Identities = 485/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 27922679 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 27922736 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 27922737 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 27922796 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 27922797 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 27922856 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 27922857 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 27922916 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 27922917 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 27922976 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 27922977 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 27923036 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 ||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| Sbjct: 27923037 ctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaa 27923096 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27923097 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 27923156 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 |||||||||| |||||||||||||||| |||| Sbjct: 27923157 aaagaaatatcgtctttccagaaagaagaacc 27923188 Score = 141 bits (71), Expect = 3e-30 Identities = 126/143 (88%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 92 gaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcga 151 ||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| | | Sbjct: 4509148 gaaactattttagtaaaattcaattctctcaattactcgacgatcgcgccaaaaacgcaa 4509089 Query: 152 gttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggatt 211 ||||| ||||| || ||||||| | ||| ||| ||| ||||||||||||||||| ||| Sbjct: 4509088 gttccatttggatttccttttt-actaatgatatccgttgcattgtcatcatagcgtatt 4509030 Query: 212 attataccgtcttcgcatttgaa 234 ||||||||||||||||||||||| Sbjct: 4509029 attataccgtcttcgcatttgaa 4509007 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| || | |||||||||||||||||||||||| |||| Sbjct: 27923226 tatatttctaaccggagaaattgacttcgtatgggcattttgctgg 27923271
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 795 bits (401), Expect = 0.0 Identities = 485/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 23181906 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 23181849 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 23181848 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 23181789 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||| ||||||||| ||||||||||||| || |||||||||||||| | Sbjct: 23181788 attcctcggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatcaatga 23181729 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 23181728 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 23181669 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 23181668 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 23181609 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 23181608 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 23181549 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 23181548 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 23181489 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23181488 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 23181429 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 23181428 aaagaaatattgtctttccagaaagaagaacc 23181397 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 23181359 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 23181314
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 795 bits (401), Expect = 0.0 Identities = 485/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 86037 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 86094 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 86095 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 86154 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 86155 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 86214 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 86215 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 86274 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 86275 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 86334 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 86335 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 86394 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 ||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| Sbjct: 86395 ctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaa 86454 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86455 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 86514 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 |||||||||| |||||||||||||||| |||| Sbjct: 86515 aaagaaatatcgtctttccagaaagaagaacc 86546 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| || | |||||||||||||||||||||||| |||| Sbjct: 86584 tatatttctaaccggagaaattgacttcgtatgggcattttgctgg 86629
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_D04 Length = 143407 Score = 795 bits (401), Expect = 0.0 Identities = 485/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 12013 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 12070 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 12071 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 12130 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 12131 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 12190 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 12191 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 12250 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 12251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 12310 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 12311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 12370 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 ||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| Sbjct: 12371 ctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaa 12430 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12431 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 12490 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 |||||||||| |||||||||||||||| |||| Sbjct: 12491 aaagaaatatcgtctttccagaaagaagaacc 12522 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| || | |||||||||||||||||||||||| |||| Sbjct: 12560 tatatttctaaccggagaaattgacttcgtatgggcattttgctgg 12605
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 795 bits (401), Expect = 0.0 Identities = 485/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 132554 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 132497 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 132496 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 132437 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||| ||||||||| ||||||||||||| || |||||||||||||| | Sbjct: 132436 attcctcggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatcaatga 132377 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 132376 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 132317 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 132316 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 132257 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 132256 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 132197 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 132196 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 132137 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132136 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 132077 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 132076 aaagaaatattgtctttccagaaagaagaacc 132045 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 132007 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 131962
>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0642B07 Length = 139297 Score = 795 bits (401), Expect = 0.0 Identities = 485/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 16668 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 16611 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 16610 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 16551 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||| ||||||||| ||||||||||||| || |||||||||||||| | Sbjct: 16550 attcctcggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatcaatga 16491 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 16490 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 16431 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 16430 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 16371 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 16370 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 16311 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 16310 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 16251 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16250 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 16191 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 16190 aaagaaatattgtctttccagaaagaagaacc 16159 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 16121 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 16076
>ref|XM_450630.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 771 bits (389), Expect = 0.0 Identities = 482/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 787 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 730 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 729 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 670 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 669 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 610 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 609 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 550 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 549 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcacta 490 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 489 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcag 430 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| Sbjct: 429 ctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaa 370 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 369 gggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatg 310 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 309 aaagaaatattgtctttccagaaagaagaacc 278 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcatttt 591 ||||| ||||| |||| |||||||||||||||||||||||| Sbjct: 239 tatatttctaaccgaagaaattgacttcgtatgggcatttt 199
>ref|XM_450631.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2141 Score = 771 bits (389), Expect = 0.0 Identities = 482/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1515 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1458 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1457 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1398 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1397 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1338 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1337 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1278 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1277 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcacta 1218 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 1217 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcag 1158 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| Sbjct: 1157 ctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaa 1098 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1097 gggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatg 1038 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 1037 aaagaaatattgtctttccagaaagaagaacc 1006 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcatttt 591 ||||| ||||| |||| |||||||||||||||||||||||| Sbjct: 967 tatatttctaaccgaagaaattgacttcgtatgggcatttt 927
>ref|XM_506652.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1001_G09.24 mRNA Length = 1742 Score = 771 bits (389), Expect = 0.0 Identities = 482/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1730 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1673 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1672 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1613 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1612 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1553 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1552 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1493 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1492 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcacta 1433 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 1432 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcag 1373 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| Sbjct: 1372 ctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaa 1313 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1312 gggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatg 1253 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 1252 aaagaaatattgtctttccagaaagaagaacc 1221 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcatttt 591 ||||| ||||| |||| |||||||||||||||||||||||| Sbjct: 1182 tatatttctaaccgaagaaattgacttcgtatgggcatttt 1142
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 771 bits (389), Expect = 0.0 Identities = 482/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 11896687 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 11896630 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 11896629 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 11896570 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 11896569 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 11896510 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 11896509 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 11896450 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 11896449 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcacta 11896390 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 11896389 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcag 11896330 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| Sbjct: 11896329 ctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaa 11896270 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 11896269 gggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatg 11896210 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 11896209 aaagaaatattgtctttccagaaagaagaacc 11896178 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 20862633 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 20862692 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 20862693 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 20862751 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 20862752 attgttgtcatagcgtattattataccgtcttcgcatttgaa 20862793 Score = 153 bits (77), Expect = 8e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 434 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14456068 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 14456009 Query: 494 gtctttccagaaagaaaaacc 514 |||||||||||||||| |||| Sbjct: 14456008 gtctttccagaaagaagaacc 14455988 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 14455950 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 14455905 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcatttt 591 ||||| ||||| |||| |||||||||||||||||||||||| Sbjct: 11896139 tatatttctaaccgaagaaattgacttcgtatgggcatttt 11896099
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 771 bits (389), Expect = 0.0 Identities = 482/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 78177 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 78120 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 78119 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 78060 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 78059 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 78000 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 77999 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 77940 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 77939 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcacta 77880 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 77879 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcag 77820 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| Sbjct: 77819 ctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaa 77760 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 77759 gggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatg 77700 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 77699 aaagaaatattgtctttccagaaagaagaacc 77668 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcatttt 591 ||||| ||||| |||| |||||||||||||||||||||||| Sbjct: 77629 tatatttctaaccgaagaaattgacttcgtatgggcatttt 77589
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 771 bits (389), Expect = 0.0 Identities = 482/512 (94%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1167 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1110 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1109 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1050 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1049 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 990 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 989 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 930 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 929 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcacta 870 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 869 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcag 810 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| Sbjct: 809 ctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaa 750 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 749 gggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatg 690 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 689 aaagaaatattgtctttccagaaagaagaacc 658 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcatttt 591 ||||| ||||| |||| |||||||||||||||||||||||| Sbjct: 619 tatatttctaaccgaagaaattgacttcgtatgggcatttt 579
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 767 bits (387), Expect = 0.0 Identities = 483/514 (93%), Gaps = 2/514 (0%) Strand = Plus / Plus Query: 1 tttaaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcc 60 |||||| ||||||||| | ||| ||||||||||| || |||||||||||| || ||| | Sbjct: 78971 tttaaagcatatacgtgagacaaaatctactaatttt--ttctttgatctatatctcgtc 79028 Query: 61 tactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctct 120 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 79029 tactagtatttataatacttcaggagctaatgaaactattttagtcaaattcaattctct 79088 Query: 121 caattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaat 180 ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 79089 taattcttcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaat 79148 Query: 181 tataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattcttt 240 ||||| || ||||||||||||||||| |||||||||||||| |||| |||||||||||| Sbjct: 79149 gataactgctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattcttt 79208 Query: 241 acatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaa 300 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79209 acgtgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcac 79268 Query: 301 tgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagc 360 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 79269 tgcgtctttgattacagcaataataacatcaccaatacgagcatatcgctgattaccagc 79328 Query: 361 agctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaa 420 ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 79329 ggctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaa 79388 Query: 421 aagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagga 480 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct: 79389 aagggtctgaggttgaatcatattatttggatttccatttgttatttcaatgcaaaagga 79448 Query: 481 tgaaagaaatattgtctttccagaaagaaaaacc 514 |||||||||||||||||||||||||||||||||| Sbjct: 79449 tgaaagaaatattgtctttccagaaagaaaaacc 79482 Score = 97.6 bits (49), Expect = 4e-17 Identities = 55/57 (96%) Strand = Plus / Plus Query: 540 ttttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 79509 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactgg 79565
>emb|X06734.1|CHZMRP14 Maize chloroplast genes for ribosomal proteins L14, S8 and L16 partial Length = 1287 Score = 767 bits (387), Expect = 0.0 Identities = 483/514 (93%), Gaps = 2/514 (0%) Strand = Plus / Minus Query: 1 tttaaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcc 60 |||||| ||||||||| | ||| ||||||||||| || |||||||||||| || ||| | Sbjct: 698 tttaaagcatatacgtgagacaaaatctactaatttt--ttctttgatctatatctcgtc 641 Query: 61 tactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctct 120 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 640 tactagtatttataatacttcaggagctaatgaaactattttagtcaaattcaattctct 581 Query: 121 caattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaat 180 ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 580 taattcttcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaat 521 Query: 181 tataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattcttt 240 ||||| || ||||||||||||||||| |||||||||||||| |||| |||||||||||| Sbjct: 520 gataactgctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattcttt 461 Query: 241 acatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaa 300 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 460 acgtgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcac 401 Query: 301 tgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagc 360 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 400 tgcgtctttgattacagcaataataacatcaccaatacgagcatatcgctgattaccagc 341 Query: 361 agctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaa 420 ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 340 ggctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaa 281 Query: 421 aagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagga 480 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct: 280 aagggtctgaggttgaatcatattatttggatttccatttgttatttcaatgcaaaagga 221 Query: 481 tgaaagaaatattgtctttccagaaagaaaaacc 514 |||||||||||||||||||||||||||||||||| Sbjct: 220 tgaaagaaatattgtctttccagaaagaaaaacc 187 Score = 97.6 bits (49), Expect = 4e-17 Identities = 55/57 (96%) Strand = Plus / Minus Query: 540 ttttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 160 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactgg 104
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 763 bits (385), Expect = 0.0 Identities = 481/512 (93%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 146545 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 146488 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 146487 ctagtatttataatacttcaggagctaatgaaactagtttagtaaaattcaattctctca 146428 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||| | |||| ||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 146427 attcctcgacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatcaatga 146368 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 146367 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 146308 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 146307 atgtacgtacaattacagctcgaattacttgagatctttctagaggcatttggggcactg 146248 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 146247 cgtctttgattacagcaacaataacatcaccaatacgagcatattgctgattactagcag 146188 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 146187 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 146128 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146127 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 146068 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 146067 aaagaaatattgtctttccagaaagaagaacc 146036 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 145997 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 145952
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11, complete sequence Length = 102567 Score = 763 bits (385), Expect = 0.0 Identities = 481/512 (93%), Gaps = 2/512 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 5732 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 5675 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 5674 ctagtatttataatacttcaggagctaatgaaactagtttagtaaaattcaattctctca 5615 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||| | |||| ||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 5614 attcctcgacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatcaatga 5555 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 5554 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 5495 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 302 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 5494 atgtacgtacaattacagctcgaattacttgagatctttctagaggcatttggggcactg 5435 Query: 303 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 362 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 5434 cgtctttgattacagcaacaataacatcaccaatacgagcatattgctgattactagcag 5375 Query: 363 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 422 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 5374 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 5315 Query: 423 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5314 gggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatg 5255 Query: 483 aaagaaatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| |||| Sbjct: 5254 aaagaaatattgtctttccagaaagaagaacc 5223 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 5184 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 5139
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 761 bits (384), Expect = 0.0 Identities = 477/507 (94%), Gaps = 2/507 (0%) Strand = Plus / Plus Query: 8 catatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagt 67 ||||||||| | ||| ||||||||||| || |||||||||||| || ||| |||||||| Sbjct: 78994 catatacgtgagacaaaatctactaatttt--ttctttgatctatatctcgtctactagt 79051 Query: 68 atttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcc 127 ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct: 79052 atttataatacttcaggagctaatgaaactattttagtcaaattcaattctcttaattct 79111 Query: 128 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 187 ||||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct: 79112 tcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatgataact 79171 Query: 188 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 247 || ||||||||||||||||| |||||||||||||| |||| |||||||||||||| |||| Sbjct: 79172 gctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttacgtgta 79231 Query: 248 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 307 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 79232 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtct 79291 Query: 308 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 367 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 79292 ttgattacagcaataataacatcaccaatacgagcatatcgctgattaccagcggctcct 79351 Query: 368 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 427 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 79352 atgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtc 79411 Query: 428 tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaaga 487 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 79412 tgaggttgaatcatattatttggatttccatttgttatttcaatgcaaaaggatgaaaga 79471 Query: 488 aatattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||||| Sbjct: 79472 aatattgtctttccagaaagaaaaacc 79498 Score = 97.6 bits (49), Expect = 4e-17 Identities = 55/57 (96%) Strand = Plus / Plus Query: 540 ttttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 79525 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactgg 79581
>ref|NM_190859.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 372 Score = 618 bits (312), Expect = e-174 Identities = 357/372 (95%) Strand = Plus / Minus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 372 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 313 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 312 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 253 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 252 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 193 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 192 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcatcttt 133 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 132 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 73 Query: 370 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 72 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 13 Query: 430 aggttgaatcat 441 |||||||||||| Sbjct: 12 aggttgaatcat 1
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 203 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 262 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 14317 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 14376 Query: 263 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 322 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 14377 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 14436 Query: 323 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 382 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 14437 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 14496 Query: 383 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 442 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 14497 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 14556 Query: 443 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 502 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 14557 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 14616 Query: 503 gaaa 506 |||| Sbjct: 14617 gaaa 14620 Score = 228 bits (115), Expect = 2e-56 Identities = 182/202 (90%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 13940 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 13997 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 13998 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 14057 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||| ||| |||||||||||||| |||||||||||||| || ||||||| |||||| | Sbjct: 14058 attcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatga 14116 Query: 183 taaccgcagcattgtcatcata 204 ||||||| |||||||| ||||| Sbjct: 14117 taaccgctgcattgtcgtcata 14138 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| ||||||||||| |||||||||||| |||| Sbjct: 14667 tatatttctaaccgaagaaattgacttcatatgggcattttgctgg 14712
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 203 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 262 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 24638131 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 24638190 Query: 263 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 322 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 24638191 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 24638250 Query: 323 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 382 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 24638251 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 24638310 Query: 383 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 442 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 24638311 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 24638370 Query: 443 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 502 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 24638371 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 24638430 Query: 503 gaaa 506 |||| Sbjct: 24638431 gaaa 24638434 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 252 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32000439 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 32000498 Query: 253 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 312 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 32000499 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 32000558 Query: 313 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 372 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32000559 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 32000618 Query: 373 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 432 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 32000619 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 32000678 Query: 433 ttgaatcatattattttgatttcaatttgttatttcaatgc 473 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 32000679 ttgaatcatattattttgattttaatttgttatttcaatgc 32000719 Score = 228 bits (115), Expect = 2e-56 Identities = 182/202 (90%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 24637754 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 24637811 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 24637812 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 24637871 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||| ||| |||||||||||||| |||||||||||||| || ||||||| |||||| | Sbjct: 24637872 attcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatga 24637930 Query: 183 taaccgcagcattgtcatcata 204 ||||||| |||||||| ||||| Sbjct: 24637931 taaccgctgcattgtcgtcata 24637952 Score = 163 bits (82), Expect = 8e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 27557409 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 27557468 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 27557469 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 27557527 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 27557528 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 27557569 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| ||||||||||| |||||||||||| |||| Sbjct: 24638481 tatatttctaaccgaagaaattgacttcatatgggcattttgctgg 24638526
>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136470 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 203 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 262 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 70177 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 70236 Query: 263 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 322 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 70237 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 70296 Query: 323 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 382 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 70297 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 70356 Query: 383 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 442 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 70357 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 70416 Query: 443 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 502 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 70417 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 70476 Query: 503 gaaa 506 |||| Sbjct: 70477 gaaa 70480 Score = 228 bits (115), Expect = 2e-56 Identities = 182/202 (90%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 69800 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 69857 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 69858 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 69917 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||| ||| |||||||||||||| |||||||||||||| || ||||||| |||||| | Sbjct: 69918 attcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatga 69976 Query: 183 taaccgcagcattgtcatcata 204 ||||||| |||||||| ||||| Sbjct: 69977 taaccgctgcattgtcgtcata 69998 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| ||||||||||| |||||||||||| |||| Sbjct: 70527 tatatttctaaccgaagaaattgacttcatatgggcattttgctgg 70572
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 203 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 262 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 24555600 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 24555659 Query: 263 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 322 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 24555660 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 24555719 Query: 323 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 382 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 24555720 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 24555779 Query: 383 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 442 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 24555780 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 24555839 Query: 443 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 502 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 24555840 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 24555899 Query: 503 gaaa 506 |||| Sbjct: 24555900 gaaa 24555903 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 252 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32090951 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 32091010 Query: 253 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 312 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 32091011 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 32091070 Query: 313 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 372 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32091071 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 32091130 Query: 373 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 432 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 32091131 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 32091190 Query: 433 ttgaatcatattattttgatttcaatttgttatttcaatgc 473 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 32091191 ttgaatcatattattttgattttaatttgttatttcaatgc 32091231 Score = 228 bits (115), Expect = 2e-56 Identities = 182/202 (90%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 24555223 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 24555280 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 24555281 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 24555340 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||| ||| |||||||||||||| |||||||||||||| || ||||||| |||||| | Sbjct: 24555341 attcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatga 24555399 Query: 183 taaccgcagcattgtcatcata 204 ||||||| |||||||| ||||| Sbjct: 24555400 taaccgctgcattgtcgtcata 24555421 Score = 163 bits (82), Expect = 8e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 27648732 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 27648791 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 27648792 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 27648850 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 27648851 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 27648892 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| ||||||||||| |||||||||||| |||| Sbjct: 24555950 tatatttctaaccgaagaaattgacttcatatgggcattttgctgg 24555995
>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence Length = 144306 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 252 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 92391 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 92450 Query: 253 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 312 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 92451 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 92510 Query: 313 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 372 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 92511 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 92570 Query: 373 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 432 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 92571 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 92630 Query: 433 ttgaatcatattattttgatttcaatttgttatttcaatgc 473 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 92631 ttgaatcatattattttgattttaatttgttatttcaatgc 92671
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence Length = 178158 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 252 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 1623 Query: 253 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 312 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 1624 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 1683 Query: 313 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 372 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1684 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 1743 Query: 373 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 432 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 1744 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 1803 Query: 433 ttgaatcatattattttgatttcaatttgttatttcaatgc 473 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 1804 ttgaatcatattattttgattttaatttgttatttcaatgc 1844
>gb|DQ069425.1| Typha latifolia ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 402 bits (203), Expect = e-109 Identities = 325/365 (89%), Gaps = 3/365 (0%) Strand = Plus / Minus Query: 77 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatc 136 |||||||||||||||||||||||||| ||||||||||| | |||||||||| || ||| Sbjct: 362 acttcaggagctaatgaaactattttagtaaaattcaactgtctcaattcccgagcgatc 303 Query: 137 gcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattg 196 || ||||||||||||||||||||||| || |||| ||||||||| | ||| ||||||||| Sbjct: 302 gcaccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgcagcattg 243 Query: 197 tcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaatt 256 |||||||| || ||||| ||||||| ||| | ||||| |||||||||||||||||||||| Sbjct: 242 tcatcatatcgtattatgataccgttttcacgtttgagttctttacatgtacgtacaatt 183 Query: 257 acagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattaca 316 ||||||| ||||||||| ||||||||||||||||| | ||| | ||| |||||||||||| Sbjct: 182 acagctctaattacttctgatctttctagaggcatattgggaactgcttctttgattaca 123 Query: 317 gcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcga 376 ||||||||||||||||||||| |||||||||| ||||||| |||||||||||| |||| Sbjct: 122 gcaacaataacatcaccaatatgagcatatcggtgattac---cagctcctatgattcga 66 Query: 377 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 436 |||||||| |||||||||||||| || || || |||||||| |||||||||||||||||| Sbjct: 65 atacacattaattttcgagctccgctgttatccgctacattcaaaagggtctgaggttga 6 Query: 437 atcat 441 ||||| Sbjct: 5 atcat 1
>emb|AL731738.6|CNS08C7N Oryza sativa chromosome 12, . BAC OSJNBa0005K20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143618 Score = 391 bits (197), Expect = e-105 Identities = 260/280 (92%), Gaps = 2/280 (0%) Strand = Plus / Minus Query: 3 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 62 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 79075 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 79018 Query: 63 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 122 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 79017 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 78958 Query: 123 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 182 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 78957 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 78898 Query: 183 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 242 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 78897 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 78838 Query: 243 atgtacgtacaattacagctcgaattacttcggatctttc 282 |||||||||||||||||||||||||||||||||||||||| Sbjct: 78837 atgtacgtacaattacagctcgaattacttcggatctttc 78798
>gb|DQ069426.1| Yucca schidigera ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 387 bits (195), Expect = e-104 Identities = 326/369 (88%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||| || |||||||||||||||||||| ||||||||||| | |||||||||| || Sbjct: 366 taatacctcgggagctaatgaaactattttagtaaaattcaactgtctcaattcccgagc 307 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 |||||| ||||||| |||||||||||||||||| |||| ||||||||| | |||||| || Sbjct: 306 aatcgccccaaaaattcgagttccttttgggtttccttcttgatcaatgacaaccgctgc 247 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 252 |||||||||||| || ||||| ||||||| || | ||||| |||||||||||||||||| Sbjct: 246 attgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtac 187 Query: 253 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 312 ||||||||||| ||||||||| ||||||||||||||||| | ||||| ||| |||||||| Sbjct: 186 aattacagctctaattacttctgatctttctagaggcatattgggcactgcttctttgat 127 Query: 313 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 372 ||||||||||||||| ||||||||| |||||||||| ||||||| |||| ||||||| Sbjct: 126 tacagcaacaataacgtcaccaatatgagcatatcggtgattac---cagcccctatgat 70 Query: 373 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 432 ||||||||||||||||| ||||||||| || || ||||||||||| |||||||| ||||| Sbjct: 69 tcgaatacacatcaattctcgagctccgctgttatctgctacattcaaaagggtttgagg 10 Query: 433 ttgaatcat 441 ||||||||| Sbjct: 9 ttgaatcat 1
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01, complete sequence Length = 141661 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 184 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 243 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 23399 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 23340 Query: 244 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 23339 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 23280 Query: 304 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 363 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 23279 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 23220 Query: 364 tcctatgactcgaatacacat 384 ||||||||||||||||||||| Sbjct: 23219 tcctatgactcgaatacacat 23199 Score = 174 bits (88), Expect = 2e-40 Identities = 235/280 (83%), Gaps = 3/280 (1%) Strand = Plus / Plus Query: 89 aatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaact 148 ||||||| |||||| || |||||||||||||||||||| |||| ||| ||||||||| Sbjct: 96297 aatgaaattattttaatacaattcaattctctcaattcc-cggcgatcatgccaaaaacg 96355 Query: 149 cgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcgg 208 |||| || ||||| || | ||||||||| || ||||||| | || || ||||||| Sbjct: 96356 tgagtgccctttggatttcttttttgatcgatgataaccgttgtata-tcggcatagcgt 96414 Query: 209 attattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatt 268 |||||||||| || ||| |||||||| ||||||||||||| || |||||| ||| |||| Sbjct: 96415 attattatactgt-ttcacatttgaactctttacatgtacatataattacttctctaatt 96473 Query: 269 acttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaataaca 328 |||| || ||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 96474 actttgggtctttctagaggcatttggggcactgcatctttcattacagcaacaataaca 96533 Query: 329 tcaccaatacgagcatatcgctgattaccagcagctccta 368 ||| ||||| |||||||| | ||||||| |||||| |||| Sbjct: 96534 tcatcaatatgagcatattgttgattactagcagcaccta 96573 Score = 107 bits (54), Expect = 4e-20 Identities = 60/62 (96%) Strand = Plus / Plus Query: 411 ctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaa 470 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 96608 ctacatttaaaagggtttgaggttgaatcatattattttgatgtcaatttgttatttcaa 96667 Query: 471 tg 472 || Sbjct: 96668 tg 96669
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 184 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 243 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 130171 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 130112 Query: 244 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 130111 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 130052 Query: 304 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 363 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 130051 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 129992 Query: 364 tcctatgactcgaatacacat 384 ||||||||||||||||||||| Sbjct: 129991 tcctatgactcgaatacacat 129971
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 349 bits (176), Expect = 7e-93 Identities = 337/390 (86%), Gaps = 3/390 (0%) Strand = Plus / Plus Query: 60 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 119 |||||||||||||||| |||||||| |||||||| |||||||| || ||||| || | || Sbjct: 81909 ctactagtatttataagacttcaggggctaatgagactattttagtgaaatttaactttc 81968 Query: 120 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 179 |||||||| |||||||| ||||||||||||||||||||||| || |||| |||||||| Sbjct: 81969 tcaattcccgagcaatcgctccaaaaactcgagttccttttggatttccttcttgatcaa 82028 Query: 180 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 239 | | ||| || |||||||||||||| || ||||| ||||||| |||| ||||| ||||| Sbjct: 82029 tgacaactgccgcattgtcatcatatcgtattatcataccgttgtcgcgtttgagttctt 82088 Query: 240 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 299 |||||||||||||||||||||||||||| ||||| |||||||| |||||||| | ||||| Sbjct: 82089 tacatgtacgtacaattacagctcgaataacttctgatctttcgagaggcatattgggca 82148 Query: 300 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 359 ||| ||||||||||||||||||||||| ||||| ||| |||||||||| |||||| Sbjct: 82149 ctgcttctttgattacagcaacaataacgtcaccgatatgagcatatcggcgattac--- 82205 Query: 360 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 419 ||| ||||||| |||||| |||||||||| |||||| || || ||||| |||||||| | Sbjct: 82206 tagcccctatgattcgaatgcacatcaattctcgagccccgctgttgtccgctacattca 82265 Query: 420 aaagggtctgaggttgaatcatattatttt 449 || ||||||||||||||||||||| ||||| Sbjct: 82266 aatgggtctgaggttgaatcatatcatttt 82295
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 323 bits (163), Expect = 4e-85 Identities = 344/401 (85%), Gaps = 5/401 (1%) Strand = Plus / Plus Query: 71 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 130 ||||| ||||| || ||||||||||| ||||| ||||||||||| | || |||||| ||| Sbjct: 82583 tataagacttcgggtgctaatgaaacgattttagtaaaattcaactgtcgcaattc-tcg 82641 Query: 131 -gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||||| || ||||||| ||||||||||||||| || |||| ||||||||| |||||||| Sbjct: 82642 agcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataaccgc 82701 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||||||||| || ||||| || |||| || | ||||| |||||||||||| || Sbjct: 82702 tgcattgtcatcatatcgtattatcatgccgttgtcacgtttgagttctttacatgtgcg 82761 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||| ||||||| ||||| ||| ||||||||||||||||| | ||||| ||| ||||| Sbjct: 82762 tacaatcacagctctaattatttctgatctttctagaggcatgttgggcactgcttcttt 82821 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||| |||| | |||||||||| ||||||| ||| |||||| Sbjct: 82822 gattacagcaacaataacatcgccaagatgagcatatcggtgattac---cagttcctat 82878 Query: 370 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 429 || |||||||||||| |||||| |||||||||| || || |||||||| ||||||||||| Sbjct: 82879 gattcgaatacacattaatttttgagctccactgttatccgctacattcaaaagggtctg 82938 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaa 470 |||||||||||||| ||||| | || ||| | ||||||||| Sbjct: 82939 aggttgaatcatatcatttttaatttaatctcttatttcaa 82979
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 319 bits (161), Expect = 6e-84 Identities = 328/383 (85%), Gaps = 3/383 (0%) Strand = Plus / Plus Query: 67 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 126 |||||||||||| |||||||||| ||||||||||| || |||||||| | ||||||||| Sbjct: 80435 tatttataatacctcaggagctagggaaactattttagtgaaattcaaatgtctcaattc 80494 Query: 127 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 186 | || ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| Sbjct: 80495 ccgagcgatcgcaccaaaaactcgagttccttttggattcccttcttgatcaatgacaac 80554 Query: 187 cgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 246 || |||||||||||||| || ||||| ||||||| || | ||||| |||||||||||| Sbjct: 80555 tgctgcattgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgt 80614 Query: 247 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 306 ||||||||||||||||| | ||||| ||||||||||||| ||| | ||| | ||| || Sbjct: 80615 acgtacaattacagctctgaccacttctgatctttctagagacatattgggtactgcttc 80674 Query: 307 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 366 ||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||| Sbjct: 80675 tttgattacagcaacaataacgtcaccaatatgagcatatcggcgattac---tggctcc 80731 Query: 367 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 426 ||||| ||||||||||||||||| |||||| || || || || ||||||||||||||||| Sbjct: 80732 tatgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaaagggt 80791 Query: 427 ctgaggttgaatcatattatttt 449 ||||||||||||||||| ||||| Sbjct: 80792 ctgaggttgaatcatatcatttt 80814
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 307 bits (155), Expect = 2e-80 Identities = 319/373 (85%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82356 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82415 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82416 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82475 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82476 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82535 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82536 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82595 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82596 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82652 Query: 369 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82653 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82712 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 82713 gaggttgaatcat 82725
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 305 bits (154), Expect = 9e-80 Identities = 184/194 (94%) Strand = Plus / Minus Query: 321 caataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatac 380 |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct: 24916826 caattacatcaccaatacgagcatatcgctgattactagcagctcctatgacttgaatac 24916767 Query: 381 acatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatca 440 |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| | Sbjct: 24916766 acattaattttcgagctccactattatctgctacatttaaaagggtctgaggttaaatta 24916707 Query: 441 tattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttc 500 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 24916706 tattattttgatttcaatttgctatttcaatgcaaaaagatgaaagaaatattgtctttc 24916647 Query: 501 cagaaagaaaaacc 514 ||||||||| |||| Sbjct: 24916646 cagaaagaagaacc 24916633 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 124 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 183 ||||||||| |||| ||||||||| |||||||||||||| || | ||||||| |||| || Sbjct: 20875041 ttcctcggcgatcgtgccaaaaacgcgagttccttttggatttcttttttgaccaatgat 20875100 Query: 184 aaccgcagcattgtcatc 201 ||||| ||||||||||| Sbjct: 20875101 aaccgttgcattgtcatc 20875118 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 105 taaaattcaattctctcaattcctcggcaatcgcgccaaaaac 147 ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 32000475 taaaattcaatactctcgattcctcggcgatcgcgccaaaaac 32000433 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 24916596 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 24916551
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 305 bits (154), Expect = 9e-80 Identities = 184/194 (94%) Strand = Plus / Minus Query: 321 caataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatac 380 |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct: 78109 caattacatcaccaatacgagcatatcgctgattactagcagctcctatgacttgaatac 78050 Query: 381 acatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatca 440 |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| | Sbjct: 78049 acattaattttcgagctccactattatctgctacatttaaaagggtctgaggttaaatta 77990 Query: 441 tattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttc 500 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 77989 tattattttgatttcaatttgctatttcaatgcaaaaagatgaaagaaatattgtctttc 77930 Query: 501 cagaaagaaaaacc 514 ||||||||| |||| Sbjct: 77929 cagaaagaagaacc 77916 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 77879 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 77834
>gb|DQ069421.1| Acorus americanus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 299 bits (151), Expect = 5e-78 Identities = 315/369 (85%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||| |||||||||| ||||||||||| || |||||||| | |||||||||| || Sbjct: 366 taatacctcaggagctagggaaactattttagtgaaattcaaatgtctcaattcccgagc 307 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || || Sbjct: 306 gatcgcaccaaaaactcgagttccttttggattcccttcttgatcaatgacaactgctgc 247 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 252 |||||||||||| || ||||| ||||||| || | ||||| |||||||||||||||||| Sbjct: 246 attgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtac 187 Query: 253 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 312 ||||||||||| | ||||| ||||||||||||| ||| | ||| | ||| |||||||| Sbjct: 186 aattacagctctgaccacttctgatctttctagagacatattgggtactgcttctttgat 127 Query: 313 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 372 ||||||||||||||| ||||||||| |||||||||| |||||| |||||||||| Sbjct: 126 tacagcaacaataacgtcaccaatatgagcatatcggcgattac---tggctcctatgat 70 Query: 373 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 432 ||||||||||||||||| |||||| || || || || ||||||||||||||||||||||| Sbjct: 69 tcgaatacacatcaattctcgagccccgctgttatccgctacatttaaaagggtctgagg 10 Query: 433 ttgaatcat 441 ||||||||| Sbjct: 9 ttgaatcat 1
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 299 bits (151), Expect = 5e-78 Identities = 324/381 (85%), Gaps = 3/381 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| || | ||||||||| Sbjct: 80082 tttataatacctcgggagctaatgaaactattttagtaaaattgaactgtctcaattctc 80141 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||||||||| |||||||| |||||||||||||| || |||| ||||||||| | ||| | Sbjct: 80142 gggcaatcgcaccaaaaacgcgagttccttttggatttccttcttgatcaatcacaactg 80201 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| ||||||| || | ||| | ||||||||| |||| Sbjct: 80202 cagcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtac 80261 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||| Sbjct: 80262 ggacaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctt 80321 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 80322 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 80378 Query: 369 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || || || ||||||||||| ||| |||||| Sbjct: 80379 tgattcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtct 80438 Query: 429 gaggttgaatcatattatttt 449 ||||||||||||||| ||||| Sbjct: 80439 gaggttgaatcatatcatttt 80459
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 299 bits (151), Expect = 5e-78 Identities = 318/373 (85%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82305 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82364 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||| ||||| || |||| ||||||||| | ||| | Sbjct: 82365 gggcgattgcaccaaaaattcgagttccctttggatttccttcttgatcaataacaactg 82424 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82425 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82484 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82485 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82544 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82545 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82601 Query: 369 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82602 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82661 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 82662 gaggttgaatcat 82674
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 299 bits (151), Expect = 5e-78 Identities = 318/373 (85%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82317 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82376 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||| ||||| || |||| ||||||||| | ||| | Sbjct: 82377 gggcgattgcaccaaaaattcgagttccctttggatttccttcttgatcaataacaactg 82436 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82437 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82496 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82497 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82556 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82557 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82613 Query: 369 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82614 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82673 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 82674 gaggttgaatcat 82686
>gb|DQ069423.1| Nuphar advena ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 291 bits (147), Expect = 1e-75 Identities = 314/369 (85%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 ||||||||| ||||||||||| ||||| || || ||||| || | ||||||||| || Sbjct: 366 taatacttcgggagctaatgagactatcttagtgaaatttaactgtctcaattcacgagc 307 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 ||||| |||||||||||||| |||||||| || |||| ||||||||| | ||| || || Sbjct: 306 aatcgaaccaaaaactcgagtgccttttggatttccttcttgatcaatgacaactgctgc 247 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 252 |||||||||||| || ||||| ||||||| |||| ||||| |||||||||||||||||| Sbjct: 246 attgtcatcataccgtattatcataccgttgtcgcgtttgagttctttacatgtacgtac 187 Query: 253 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 312 ||||||||||| |||||||| |||||||| || ||||| | |||| ||| |||||||| Sbjct: 186 aattacagctctgattacttctgatctttccaggggcatatttggcactgcttctttgat 127 Query: 313 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 372 ||||||||||||||| ||||| ||| |||||||||| | ||||| ||||||||||| Sbjct: 126 tacagcaacaataacgtcaccgatatgagcatatcggtaattac---tagctcctatgat 70 Query: 373 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 432 |||||||||||||| |||||||||||| || ||||| |||||||| ||| |||||||||| Sbjct: 69 tcgaatacacatcagttttcgagctccgctgttgtccgctacattcaaatgggtctgagg 10 Query: 433 ttgaatcat 441 ||||||||| Sbjct: 9 ttgaatcat 1
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 291 bits (147), Expect = 1e-75 Identities = 323/381 (84%), Gaps = 3/381 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| || | |||||||||| Sbjct: 82667 tttataatacctccggagctaatgaaactattttagtaaaatttaactgtctcaattccc 82726 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 |||||| || |||||||| |||||||| |||||||| |||| |||||| || | ||||| Sbjct: 82727 gggcaattgcaccaaaaacccgagttccctttgggtttccttcttgatcgatgacaaccg 82786 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| ||||||| || | ||||| ||||||||| |||| Sbjct: 82787 cagcattgtcatcatatcgtattatcataccgttatcacgtttgagttctttacaagtac 82846 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 ||||||||||||||| | ||||| |||||| |||| ||||| | |||| ||| |||| Sbjct: 82847 gtacaattacagctctgaccacttctgatcttgctaggggcatgtttggcactgcttctt 82906 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||| ||| |||||||||| |||| | |||||||| Sbjct: 82907 tgatcacagcaacaataacgtcaccgatatgagcatatcgacgattgc---tagctccta 82963 Query: 369 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || || || || |||||||| |||||||||| Sbjct: 82964 tgattcgaatacacatcaattctcgagccccgctgttatccgctacattcaaaagggtct 83023 Query: 429 gaggttgaatcatattatttt 449 ||||||||||||||| ||||| Sbjct: 83024 gaggttgaatcatatcatttt 83044
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 291 bits (147), Expect = 1e-75 Identities = 317/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82452 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82511 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82512 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82571 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 ||||||||||||| || || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82572 cagcattgtcatcgtatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 82631 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82632 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82691 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82692 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82748 Query: 369 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82749 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82808 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 82809 gaggttgaatcat 82821
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 291 bits (147), Expect = 1e-75 Identities = 317/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82449 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82508 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82509 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82568 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 ||||||||||||| || || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82569 cagcattgtcatcgtatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 82628 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82629 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82688 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82689 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82745 Query: 369 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82746 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82805 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 82806 gaggttgaatcat 82818
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 289 bits (146), Expect = 5e-75 Identities = 322/380 (84%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||| ||||| ||||||||||| |||||||| || | |||||||||| Sbjct: 85542 ttataatacctcaggggctaaggaaactattttagtaaaatttaactgtctcaattcccg 85601 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 | | ||||| ||||||| |||||||||||||||||| |||| ||||||||| ||||| || Sbjct: 85602 gacgatcgcaccaaaaattcgagttccttttgggtttccttcttgatcaataataactgc 85661 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 ||||||||||||||| || ||||| ||||||| || | ||||| ||||||||| ||||| Sbjct: 85662 agcattgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacaggtacg 85721 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||| |||||||| ||||||||||||||||| | || | | | ||||| Sbjct: 85722 tacaattacagctctgattacttctgatctttctagaggcatatttggtactacttcttt 85781 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||| |||||||||||||| ||||||||| |||| ||||| |||||| || |||||| Sbjct: 85782 gatcacagcaacaataacgtcaccaatatgagcgtatcggcgattac---tagttcctat 85838 Query: 370 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 429 || ||||||||||||||||| ||| || || || ||||| |||||||| ||| ||||||| Sbjct: 85839 gattcgaatacacatcaattctcgggccccgctgttgtccgctacattcaaatgggtctg 85898 Query: 430 aggttgaatcatattatttt 449 ||||||||||||| ||||| Sbjct: 85899 gggttgaatcatatcatttt 85918
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 287 bits (145), Expect = 2e-74 Identities = 321/379 (84%), Gaps = 3/379 (0%) Strand = Plus / Plus Query: 71 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 130 |||||||| ||||| ||||||||||||||||| |||||||| || | ||||||||| | Sbjct: 80638 tataatacctcaggggctaatgaaactattttagtaaaattgaactgtctcaattctcgg 80697 Query: 131 gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgca 190 |||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 80698 gcaatcgcaccaaaaactcgcgttccttttggatttccttcttgatcaatcacaactgcg 80757 Query: 191 gcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgt 250 |||||||||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 80758 gcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacgg 80817 Query: 251 acaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttg 310 ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||||| Sbjct: 80818 acaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctttg 80877 Query: 311 attacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatg 370 || |||||||||||||| ||||||||| |||||||||| |||| | |||||||||| Sbjct: 80878 atcacagcaacaataacgtcaccaatatgagcatatcggcgattgc---tagctcctatg 80934 Query: 371 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctga 430 | ||||||||||||||||| |||||| || || || ||||||||||| ||| |||||||| Sbjct: 80935 attcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtctga 80994 Query: 431 ggttgaatcatattatttt 449 ||||||||||||| ||||| Sbjct: 80995 ggttgaatcatatcatttt 81013
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 287 bits (145), Expect = 2e-74 Identities = 318/375 (84%), Gaps = 3/375 (0%) Strand = Plus / Plus Query: 67 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 126 ||||||||||||||| ||||||||||| ||||| || || ||||| || | ||||||||| Sbjct: 86608 tatttataatacttcgggagctaatgagactatcttagtgaaatttaactgtctcaattc 86667 Query: 127 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 186 ||||||| ||||||||||| || |||||||| || |||| ||||||||| | ||| Sbjct: 86668 acgagcaatcgaaccaaaaactcgggtgccttttggatttccttcttgatcaatgacaac 86727 Query: 187 cgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 246 || |||||||||||||| |||||||| ||||||| |||| |||| |||||||||||| Sbjct: 86728 tgctgcattgtcatcataccggattatcataccgttgtcgcgcttgagttctttacatgt 86787 Query: 247 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 306 ||||||||||||||||| |||||||| |||||||| || ||||| | |||| ||| || Sbjct: 86788 acgtacaattacagctctgattacttctgatctttccaggggcatatttggcactgcttc 86847 Query: 307 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 366 ||||||||||||||||||||| ||||| ||| |||||||||| | ||||| |||||| Sbjct: 86848 tttgattacagcaacaataacgtcaccgatatgagcatatcggtaattac---tagctcc 86904 Query: 367 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 426 ||||| |||||||||||| | |||||| ||||| || ||||| |||||||| |||||||| Sbjct: 86905 tatgattcgaatacacataagttttcgggctccgctgttgtccgctacattcaaaagggt 86964 Query: 427 ctgaggttgaatcat 441 ||||||||||||||| Sbjct: 86965 ctgaggttgaatcat 86979
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 287 bits (145), Expect = 2e-74 Identities = 321/379 (84%), Gaps = 3/379 (0%) Strand = Plus / Plus Query: 71 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 130 |||||||| ||||| ||||||||||||||||| |||||||| || | ||||||||| | Sbjct: 80636 tataatacctcaggggctaatgaaactattttagtaaaattgaactgtctcaattctcgg 80695 Query: 131 gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgca 190 |||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 80696 gcaatcgcaccaaaaactcgcgttccttttggatttccttcttgatcaatcacaactgcg 80755 Query: 191 gcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgt 250 |||||||||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 80756 gcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacgg 80815 Query: 251 acaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttg 310 ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||||| Sbjct: 80816 acaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctttg 80875 Query: 311 attacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatg 370 || |||||||||||||| ||||||||| |||||||||| |||| | |||||||||| Sbjct: 80876 atcacagcaacaataacgtcaccaatatgagcatatcggcgattgc---tagctcctatg 80932 Query: 371 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctga 430 | ||||||||||||||||| |||||| || || || ||||||||||| ||| |||||||| Sbjct: 80933 attcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtctga 80992 Query: 431 ggttgaatcatattatttt 449 ||||||||||||| ||||| Sbjct: 80993 ggttgaatcatatcatttt 81011
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 285 bits (144), Expect = 8e-74 Identities = 323/382 (84%), Gaps = 3/382 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 82960 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 83019 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 83020 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 83079 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 83080 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 83139 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 83140 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 83199 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 83200 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 83256 Query: 369 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| | Sbjct: 83257 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggttt 83316 Query: 429 gaggttgaatcatattattttg 450 |||||||||||||||||||||| Sbjct: 83317 gaggttgaatcatattattttg 83338
>gb|AF441853.1|AF441853 Cucumis sativus RBL1 mRNA, complete cds; chloroplast gene for chloroplast product Length = 703 Score = 285 bits (144), Expect = 8e-74 Identities = 323/382 (84%), Gaps = 3/382 (0%) Strand = Plus / Minus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 436 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 377 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 376 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 317 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 316 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 257 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 256 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 197 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 196 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 140 Query: 369 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| | Sbjct: 139 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggttt 80 Query: 429 gaggttgaatcatattattttg 450 |||||||||||||||||||||| Sbjct: 79 gaggttgaatcatattattttg 58
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 285 bits (144), Expect = 8e-74 Identities = 323/382 (84%), Gaps = 3/382 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 83188 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 83247 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 83248 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 83307 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 83308 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 83367 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 83368 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 83427 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 83428 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 83484 Query: 369 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| | Sbjct: 83485 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggttt 83544 Query: 429 gaggttgaatcatattattttg 450 |||||||||||||||||||||| Sbjct: 83545 gaggttgaatcatattattttg 83566
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 283 bits (143), Expect = 3e-73 Identities = 316/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82940 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82999 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83000 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83059 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || |||||||| |||| || | ||||| ||||||||| || | Sbjct: 83060 cagcattgtcatcatatcgtattattatcccgttgtcacgtttgagttctttacaggtcc 83119 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83120 gcacaattacagctctgactacttctgatctttctaggggcatatttggtatggcttctt 83179 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83180 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83236 Query: 369 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || || || || |||||||||||| |||||| Sbjct: 83237 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtct 83296 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 83297 gaggttgaatcat 83309
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 276 bits (139), Expect = 8e-71 Identities = 315/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83177 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83236 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83237 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83296 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| || | Sbjct: 83297 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtcc 83356 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83357 gcacaattacagctctgactacttctgatctttctaggggcatatttggtacggcttctt 83416 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83417 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83473 Query: 369 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || || || || |||||||||||| |||||| Sbjct: 83474 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtct 83533 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 83534 gaggttgaatcat 83546
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 276 bits (139), Expect = 8e-71 Identities = 317/375 (84%), Gaps = 6/375 (1%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||||||||||||||||||||| | ||| || || || ||||||| Sbjct: 79239 ttataatacctcaggagctaatgaaactattttcgcaaattt---ttgtcgcaattcccg 79295 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 |||||| || ||||||| ||||||||||||||| || |||| ||||||||| ||||| || Sbjct: 79296 ggcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataactgc 79355 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 ||||||||||||||| || ||||| ||||||| |||| ||| | ||||||||| ||||| Sbjct: 79356 agcattgtcatcatatcgtattatcataccgttgtcgcgttttagttctttacaagtacg 79415 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 ||||| |||||||| || ||||| |||||||||| ||| | | ||| | ||| ||||| Sbjct: 79416 tacaactacagctctgatcacttctgatctttctaagggcgtgttggggattgcttcttt 79475 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||| |||||||||||||| |||||||||||||||||||| | || | ||||||||| Sbjct: 79476 gatcacagcaacaataacgtcaccaatacgagcatatcgacggttgc---tagctcctat 79532 Query: 370 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 429 || ||||||||||||||||| |||||| || || |||||||||||||| ||| ||||||| Sbjct: 79533 gattcgaatacacatcaattctcgagccccgctgttgtctgctacattcaaatgggtctg 79592 Query: 430 aggttgaatcatatt 444 ||||||||||||||| Sbjct: 79593 aggttgaatcatatt 79607
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 276 bits (139), Expect = 8e-71 Identities = 315/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83420 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83479 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83480 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83539 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 83540 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 83599 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | || ||| ||||||||||| ||||| | || | ||| |||| Sbjct: 83600 gcacaattacagctctgactatttctgatctttctaggggcatatttggtactgcttctt 83659 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83660 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83716 Query: 369 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 428 ||| |||||||||||| |||| |||||| || || || || |||||||||||| |||||| Sbjct: 83717 tgattcgaatacacattaattctcgagccccgctgttatccgctacatttaaatgggtct 83776 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 83777 gaggttgaatcat 83789
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 276 bits (139), Expect = 8e-71 Identities = 315/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83175 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83234 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83235 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83294 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| || | Sbjct: 83295 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtcc 83354 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83355 gcacaattacagctctgactacttctgatctttctaggggcatatttggtacggcttctt 83414 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83415 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83471 Query: 369 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || || || || |||||||||||| |||||| Sbjct: 83472 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtct 83531 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 83532 gaggttgaatcat 83544
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 274 bits (138), Expect = 3e-70 Identities = 314/372 (84%), Gaps = 3/372 (0%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| || |||||||||||||||||||| || ||||| || | |||||||||| Sbjct: 85087 ttataatacctcgggagctaatgaaactattttagtgaaatttaactgtctcaattcccg 85146 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| ||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 85147 ggcgatcgcaccaaaaattcgagttccttttggatttccttcttgatcaatgacaacggc 85206 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 ||||||||||||||| || ||||| || |||| |||| ||||| |||||||| ||||| Sbjct: 85207 agcattgtcatcatatcgtattatcatcccgttgtcgcgtttgagttctttacgagtacg 85266 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||| || ||||| |||||||||||||| | | || | ||| || || Sbjct: 85267 tacaattacagctctgatcacttctgatctttctagaggtgtatttggtactgcttcctt 85326 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||| |||||||||||||| ||||||||| |||||||||| |||||| ||||||||| Sbjct: 85327 gatcacagcaacaataacgtcaccaatatgagcatatcggcgattac---tagctcctat 85383 Query: 370 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 429 |||||||||||||||||||| ||| || || || || ||||||||||| ||| ||||||| Sbjct: 85384 gactcgaatacacatcaattctcgggccccgctgttatctgctacattcaaatgggtctg 85443 Query: 430 aggttgaatcat 441 |||||||||||| Sbjct: 85444 aggttgaatcat 85455
>emb|X13336.1|CHSORP Spinacia oleracea plastid genes rps3, rps19, rpl14, rpl16 and rpl22 for ribosomal proteins S3, S19, L14, L16 and L22 Length = 4102 Score = 254 bits (128), Expect = 3e-64 Identities = 317/378 (83%), Gaps = 9/378 (2%) Strand = Plus / Minus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||||||||||||||||||||| | ||| || || || ||||||| Sbjct: 3697 ttataatacctcaggagctaatgaaactattttcgcaaattt---ttgtcgcaattcccg 3641 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc-- 187 |||||| || ||||||| ||||||||||||||| || |||| ||||||||| ||||| Sbjct: 3640 ggcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataacaac 3581 Query: 188 -gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 246 ||||||||||||||||| || ||||| ||||||| |||| ||| | ||||||||| || Sbjct: 3580 tgcagcattgtcatcatatcgtattatcataccgttgtcgcgttttagttctttacaagt 3521 Query: 247 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 306 |||||||| |||||||| || ||||| |||||||||| ||| | | ||| | ||| || Sbjct: 3520 acgtacaactacagctctgatcacttctgatctttctaagggcgtgttggggattgcttc 3461 Query: 307 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 366 |||||| |||||||||||||| |||||||||||||||||||| | || | |||||| Sbjct: 3460 tttgatcacagcaacaataacgtcaccaatacgagcatatcgacggttgc---tagctcc 3404 Query: 367 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 426 ||||| ||||||||||||||||| |||||| || || |||||||||||||| ||| |||| Sbjct: 3403 tatgattcgaatacacatcaattctcgagccccgctgttgtctgctacattcaaatgggt 3344 Query: 427 ctgaggttgaatcatatt 444 |||||||||||||||||| Sbjct: 3343 ctgaggttgaatcatatt 3326
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 250 bits (126), Expect = 5e-63 Identities = 317/380 (83%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||||||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 80696 ttataatacctcaggagctaatgaaactattttagtaaagtttaattgtctcaattcccg 80755 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 | ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 80756 tgggatcgccccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgc 80815 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||||||||| || ||||| | || | | | ||||| ||||||||| ||||| Sbjct: 80816 ggcattgtcatcatatcgtattatcgtcccattgttacgtttgagttctttacaagtacg 80875 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||| ||| ||||| |||||||||||||| | | || | ||| ||||| Sbjct: 80876 tacaattacagctctaatcacttctgatctttctagaggagtatttggtattgcttcttt 80935 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 |||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||| Sbjct: 80936 gattacagcaacaataacgtcaccaatatgagcatatcggcgattac---tagctcctat 80992 Query: 370 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 429 | ||||||||||||||||| || ||| || || |||||||||||||| ||| ||| || Sbjct: 80993 tattcgaatacacatcaattctctagccccgctgttgtctgctacattcaaataggtttg 81052 Query: 430 aggttgaatcatattatttt 449 ||||||||||||| ||||| Sbjct: 81053 tggttgaatcatatcatttt 81072
>dbj|AP004556.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0026A08 Length = 171272 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 169 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 228 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 4998 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 4939 Query: 229 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 288 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 4938 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 4879 Query: 289 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 338 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 4878 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 4829
>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091M20 Length = 132976 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 169 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 228 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 88345 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 88286 Query: 229 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 288 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 88285 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 88226 Query: 289 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 338 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 88225 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 88176
>gb|DQ069424.1| Ranunculus macranthus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 238 bits (120), Expect = 2e-59 Identities = 310/370 (83%), Gaps = 5/370 (1%) Strand = Plus / Minus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg-g 131 |||||||||||| ||||||||||||||||| ||||||||||| | |||||| || ||| | Sbjct: 366 taatacttcaggggctaatgaaactattttagtaaaattcaactgtctcaactc-tcgag 308 Query: 132 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 191 | || || ||||||||||||||||||||||| || |||| ||||||||| | ||| || | Sbjct: 307 cgattgcaccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgctg 248 Query: 192 cattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgta 251 ||||||||||||| | ||||| ||||| | || | ||||| ||||||||| || |||| Sbjct: 247 cattgtcatcatattgtattatcataccattgtcacgtttgagttctttacacgtgcgta 188 Query: 252 caattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttga 311 |||||||||||| || ||||| ||||||| ||||||||| | ||| | ||| ||||||| Sbjct: 187 caattacagctctgatcacttctgatctttgtagaggcatattgggaactgcttctttga 128 Query: 312 ttacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatga 371 |||| ||||||||||| || |||||| ||||||| || |||||| ||||||||||| Sbjct: 127 ttaccgcaacaataacgtcgccaatatgagcataacgtcgattac---tagctcctatga 71 Query: 372 ctcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgag 431 || ||||||||| ||||||| ||| || || ||||| |||||||||||| |||||||| Sbjct: 70 ttctaatacacattaattttctagccccgctgttgtccgctacatttaaataggtctgag 11 Query: 432 gttgaatcat 441 |||||||||| Sbjct: 10 gttgaatcat 1
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 234 bits (118), Expect = 3e-58 Identities = 306/368 (83%), Gaps = 3/368 (0%) Strand = Plus / Plus Query: 74 aatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggca 133 ||||| || ||||||||||| ||||| || || |||||||| | |||||||||| | || Sbjct: 87322 aatacctcgggagctaatgatactatcttagtgaaattcaaatgtctcaattccccagcg 87381 Query: 134 atcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagca 193 |||| ||||| ||||||||||||||||| || || | | ||||||| | ||| || ||| Sbjct: 87382 atcgaaccaaagactcgagttccttttggatttccctctggatcaataacaactgctgca 87441 Query: 194 ttgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtaca 253 ||||||||||| || ||||||||||||| || | ||||| ||||||||||||||||||| Sbjct: 87442 ttgtcatcatatcgtattattataccgttgtcacgtttgagttctttacatgtacgtaca 87501 Query: 254 attacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgatt 313 |||||||||| || ||||| |||||||| || ||||| | ||| | ||| ||||||||| Sbjct: 87502 attacagctctgatcacttctgatctttccaggggcatattgggtactgcttctttgatt 87561 Query: 314 acagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgact 373 |||||||||||||| ||||||||| |||||||||| | |||| |||||||| || | Sbjct: 87562 acagcaacaataacgtcaccaatatgagcatatcgggggttac---tagctcctacgatt 87618 Query: 374 cgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggt 433 |||||||||||||||| |||||| || || ||||| |||||||| ||| ||| |||| | Sbjct: 87619 cgaatacacatcaattctcgagccccgctgttgtccgctacattcaaataggtttgagct 87678 Query: 434 tgaatcat 441 |||||||| Sbjct: 87679 tgaatcat 87686
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 234 bits (118), Expect = 3e-58 Identities = 315/380 (82%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||| ||||||||||||||||| || ||| | || ||||||||||| | Sbjct: 85802 ttataatacctcaggtgctaatgaaactattttagtgaaacttaactctctcaattcgtg 85861 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 85862 ggcaatcgcaccaaaaactcgggttccttttggatttccttcttgatcaatgacaacagc 85921 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 ||||||||||||||| || ||||| |||||||| || ||||| | ||||||||| ||||| Sbjct: 85922 agcattgtcatcatatcgtattatgataccgtcgtcacatttaagttctttacaagtacg 85981 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||| | ||||| ||||||||||| | | || ||||| || || Sbjct: 85982 tacaattacagctctgaccacttctgatctttctagggaggtgcttggtaatgcttcctt 86041 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||| ||||||||||||| ||||| ||| |||||||||| |||||| |||||| || Sbjct: 86042 gatcacagcaacaataatgtcaccgatatgagcatatcgacgattac---tagctccgat 86098 Query: 370 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 429 || |||||||||||| |||| |||||| ||||| || || || ||||| ||| |||| || Sbjct: 86099 gattcgaatacacattaattctcgagccccactgttatccgcgacattcaaacgggtttg 86158 Query: 430 aggttgaatcatattatttt 449 |||||||||||||| ||||| Sbjct: 86159 aggttgaatcatatcatttt 86178
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 218 bits (110), Expect = 2e-53 Identities = 313/380 (82%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||| ||||||||||||||||| || ||||| || | ||||||||| Sbjct: 85487 ttataatacctcaggtgctaatgaaactattttagtgaaatttaactgtctcaattctcg 85546 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||||||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 85547 ggcaatcgcaccaaaaactcgagttccttttggatttccttcttgatcaatcacaactgc 85606 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||| |||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 85607 agcattatcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacg 85666 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||| || || || |||||||||||||| | | || ||||| || || Sbjct: 85667 tacaattacagctctgatcacctctgatctttctagaggtgtgtttggtaatgcttcctt 85726 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||| ||||||||||||| ||||| ||| |||||||||| |||||| ||||||||| Sbjct: 85727 gatcacagcaacaataatgtcaccgatatgagcatatcggcgattac---tagctcctat 85783 Query: 370 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 429 || || ||||||||| |||| ||| || || || || || |||||||| ||| || | || Sbjct: 85784 gattctaatacacattaattctcgggccccgctgttatccgctacattcaaatggctttg 85843 Query: 430 aggttgaatcatattatttt 449 |||||||||||||| ||||| Sbjct: 85844 aggttgaatcatatcatttt 85863
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 216 bits (109), Expect = 6e-53 Identities = 312/377 (82%), Gaps = 7/377 (1%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 79787 ttataatacttcaggagctaatgaaactattttagtaaagtttaattgtctcaattcccg 79846 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 | ||||| |||||||| |||||||||||||| || |||| ||||||||| | ||| || Sbjct: 79847 tgggatcgccccaaaaacgcgagttccttttggatttccttcttgatcaatgacaactgc 79906 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| ||||| || ||||| | || | | | ||||| ||||||||| ||||| Sbjct: 79907 ggcattgtcgtcatatcgtattatcgtcccattcttacgtttgagttctttacaagtacg 79966 Query: 250 tacaattacagctcgaattacttcggatctttctagag--gcatttggggcaatgcgtct 307 |||||||||||||| | ||||| ||||||||||||| | ||||||| | ||| || Sbjct: 79967 tacaattacagctctgaccacttctgatctttctagagtagtatttggg--attgcttcc 80024 Query: 308 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 367 |||||||||||||||||||| ||||||||| ||||||| || |||||| ||||||| Sbjct: 80025 ttgattacagcaacaataacgtcaccaatatgagcatagcggcgattac---tagctcct 80081 Query: 368 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 427 || | |||||||||||||||||||| ||| || || |||||||||||||| ||| ||| Sbjct: 80082 attattcgaatacacatcaattttctagccccgctgttgtctgctacattcaaataggtt 80141 Query: 428 tgaggttgaatcatatt 444 || |||||||||||||| Sbjct: 80142 tgtggttgaatcatatt 80158
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 212 bits (107), Expect = 1e-51 Identities = 313/381 (82%), Gaps = 3/381 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 ||||||||| ||||| ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 78574 tttataatatctcaggcgctaatgaaactattttagtgaaattgaactgtctcaattccc 78633 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || |||| ||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 78634 gggcgattgcgcaaaaaattcgagttccttttggatttccttcttgatcaatgacaactg 78693 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 ||||||| |||||||| | ||||||||||| | | ||||| ||||||||| |||| Sbjct: 78694 cagcattatcatcatactgtattattataccattgctacgtttgagttctttacaagtac 78753 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 ||||||||||||||| || ||||| |||||||||| || | | || | ||| |||| Sbjct: 78754 gtacaattacagctctgatcacttctgatctttctaagggtgtattcggtactgcttctt 78813 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 ||||||||||||||| || ||||||||| ||| ||||| |||||| ||| ||||| Sbjct: 78814 tgattacagcaacaacaatgtcaccaatataagcgtatcgtcgattactagc---tccta 78870 Query: 369 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 428 ||| |||||||||||||||||| || ||||| ||||| || |||||||||||| |||| | Sbjct: 78871 tgattcgaatacacatcaatttgcgggctccgctattatcggctacatttaaatgggttt 78930 Query: 429 gaggttgaatcatattatttt 449 ||||||||||||||| ||||| Sbjct: 78931 gaggttgaatcatatcatttt 78951
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 210 bits (106), Expect = 4e-51 Identities = 277/334 (82%), Gaps = 15/334 (4%) Strand = Plus / Minus Query: 60 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 119 |||||||||||| |||||| ||||||||| |||| ||| |||| || ||||||| || Sbjct: 99133 ctactagtatttttaatacctcaggagctcatgagactcttttagtgaaattcataagtc 99074 Query: 120 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 179 |||||||| || ||||| ||||||||||||||||||||||| || |||| |||||||| Sbjct: 99073 tcaattcccgagcgatcgcaccaaaaactcgagttccttttggatttccttcttgatcaa 99014 Query: 180 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 239 | | ||||| |||||||| || ||||| ||||||| || | ||||| ||||| Sbjct: 99013 tgacaaccg--------tcatcatatcgtattatcataccgttgtcacgtttgagttctt 98962 Query: 240 tacatgtacgtacaattacagctcgaattacttcgg----atctttctagaggcatttgg 295 ||||||||||||||||||||||||| ||||||| | |||||||||||||||||| | Sbjct: 98961 tacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcattttg 98902 Query: 296 ggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgatta 355 |||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||| Sbjct: 98901 ggcactgcttctttgattacagcaacaataacgtcaccaatatgagcatatcagtgatta 98842 Query: 356 ccagcagctcctatgactcgaatacacatcaatt 389 | ||||||||| || ||||||||| ||||||| Sbjct: 98841 c---cagctcctaagattcgaatacatatcaatt 98811
>gb|M15176.1|MZECPPG Zea mays chloroplast Eco x DNA Length = 1368 Score = 194 bits (98), Expect = 2e-46 Identities = 104/106 (98%) Strand = Plus / Minus Query: 244 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1365 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 1306 Query: 304 gtctttgattacagcaacaataacatcaccaatacgagcatatcgc 349 ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1305 gtctttgattacagcaataataacatcaccaatacgagcatatcgc 1260 Score = 161 bits (81), Expect = 3e-36 Identities = 101/105 (96%), Gaps = 2/105 (1%) Strand = Plus / Minus Query: 410 gctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttca 469 ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct: 1199 gctacatttaaaagggtctgaggttgaatcatattatttgg-tttccatttgttatttca 1141 Query: 470 a-tgcaaaaggatgaaagaaatattgtctttccagaaagaaaaac 513 | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1140 aatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaac 1096 Score = 107 bits (54), Expect = 4e-20 Identities = 60/62 (96%) Strand = Plus / Minus Query: 288 gcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatc 347 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1261 gcatttggggcactgcgtctttgattacagcaataataacatcaccaatacgagcatatc 1202 Query: 348 gc 349 || Sbjct: 1201 gc 1200 Score = 97.6 bits (49), Expect = 4e-17 Identities = 55/57 (96%) Strand = Plus / Minus Query: 540 ttttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1068 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactgg 1012
>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0229B10 Length = 114509 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 54859 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 54918 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 54919 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 54977 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 54978 attgttgtcatagcgtattattataccgtcttcgcatttgaa 55019
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 137662 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 137721 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 137722 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 137780 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 137781 attgttgtcatagcgtattattataccgtcttcgcatttgaa 137822
>dbj|AP005389.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091C18 Length = 154416 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 130073 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 130132 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 130133 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 130191 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 130192 actgttgtcatagcgtattattataccgtcttcgcatttgaa 130233
>dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H03 Length = 189893 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 66843 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 66902 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 66903 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 66961 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 66962 actgttgtcatagcgtattattataccgtcttcgcatttgaa 67003
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 199 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 331098 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 331047 Query: 200 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 259 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 331046 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330987 Query: 260 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 315 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330986 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330927 Query: 316 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 375 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330926 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330870 Query: 376 aatacacatcaatt 389 |||||| ||||||| Sbjct: 330869 aatacatatcaatt 330856 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 60 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 113 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 331166 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 331113
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 199 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330288 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330237 Query: 200 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 259 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330236 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330177 Query: 260 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 315 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330176 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330117 Query: 316 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 375 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330116 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330060 Query: 376 aatacacatcaatt 389 |||||| ||||||| Sbjct: 330059 aatacatatcaatt 330046 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 60 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 113 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330356 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330303
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 199 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330285 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330234 Query: 200 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 259 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330233 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330174 Query: 260 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 315 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330173 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330114 Query: 316 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 375 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330113 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330057 Query: 376 aatacacatcaatt 389 |||||| ||||||| Sbjct: 330056 aatacatatcaatt 330043 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 60 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 113 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330353 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330300
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 199 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330142 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330091 Query: 200 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 259 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330090 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330031 Query: 260 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 315 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330030 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 329971 Query: 316 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 375 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 329970 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 329914 Query: 376 aatacacatcaatt 389 |||||| ||||||| Sbjct: 329913 aatacatatcaatt 329900 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 60 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 113 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330210 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330157
>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete sequence Length = 27470 Score = 163 bits (82), Expect = 8e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Minus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 5365 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 5306 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 5305 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 5247 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 5246 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 5205
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 229 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 284 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 37711 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 37652 Query: 285 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 344 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 37651 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 37592 Query: 345 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 389 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 37591 atcagtgattac---cagctcctaagattcgaatacatatcaatt 37550
>dbj|D13105.1|RICMT09 Oryza sativa (japonica cultivar-group) mitochondrial rp114 pseudogene, clone:pMTVSCT13 Length = 645 Score = 155 bits (78), Expect = 2e-34 Identities = 210/254 (82%), Gaps = 15/254 (5%) Strand = Plus / Plus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 199 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 161 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 212 Query: 200 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 259 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 213 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 272 Query: 260 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 315 ||||| ||||||| | |||||||||||| ||||| ||||| ||| ||||||||||| Sbjct: 273 gctcgtcttacttctgtctgatctttctagagccattttgggcactgcttctttgattac 332 Query: 316 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 375 |||||||||||| || |||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 333 agcaacaataacgtccccaatatgagcatatcagtgattac---cagctcctaagattcg 389 Query: 376 aatacacatcaatt 389 |||||| ||||||| Sbjct: 390 aatacatatcaatt 403 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 60 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 113 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 93 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 146
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 153 bits (77), Expect = 8e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 434 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147871 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 147812 Query: 494 gtctttccagaaagaaaaacc 514 |||||||||||||||| |||| Sbjct: 147811 gtctttccagaaagaagaacc 147791 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 147753 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 147708
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 153 bits (77), Expect = 8e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 434 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55633 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 55574 Query: 494 gtctttccagaaagaaaaacc 514 |||||||||||||||| |||| Sbjct: 55573 gtctttccagaaagaagaacc 55553 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 551 tatatctctaatcgaataaattgacttcgtatgggcattttactgg 596 ||||| ||||| |||| |||||||||||||||||||||||| |||| Sbjct: 55515 tatatttctaaccgaagaaattgacttcgtatgggcattttgctgg 55470
>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E07 Length = 176486 Score = 145 bits (73), Expect = 2e-31 Identities = 160/189 (84%) Strand = Plus / Minus Query: 158 tttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattata 217 ||||| || |||||||||||||| ||||| | ||||||| | |||| | ||||||||| Sbjct: 33438 tttggatttcctttttgatcaatgataacgactgcattgttgttatagagtattattata 33379 Query: 218 ccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggat 277 |||| || ||||||||| || |||||||| | |||||||||| ||| ||||||| ||| Sbjct: 33378 ccgtttttgcatttgaaatccatacatgtatgcacaattacagatcgtattacttttgat 33319 Query: 278 ctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaata 337 |||||||||||||| | || || ||| ||||| ||||||||||||||||||||||||||| Sbjct: 33318 ctttctagaggcatcttggacactgcatcttttattacagcaacaataacatcaccaata 33259 Query: 338 cgagcatat 346 |||| |||| Sbjct: 33258 cgagtatat 33250
>gb|AF536225.1| Vigna angularis chloroplast S10B operon, partial sequence Length = 6550 Score = 141 bits (71), Expect = 3e-30 Identities = 179/215 (83%) Strand = Plus / Minus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||| ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 5904 ttataatacctcaggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 5845 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| || |||| ||| | ||||||||||||||| || |||| ||||||||||||||| || Sbjct: 5844 ggcgattgcgcaaaagattcgagttccttttggatttccttcttgatcaattataactgc 5785 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||| |||||||| | ||||||||||||| | ||| | || |||||| ||||| Sbjct: 5784 agcattatcatcatactgaattattataccgttgctacgttttagttgtttacaagtacg 5725 Query: 250 tacaattacagctcgaattacttcggatctttcta 284 |||||||||||||| || ||||| |||||||||| Sbjct: 5724 tacaattacagctctgatcacttcagatctttcta 5690 Score = 65.9 bits (33), Expect = 1e-07 Identities = 116/143 (81%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 307 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 366 ||||||||||||||||| || || |||||| ||||||||| |||||| ||| ||| Sbjct: 5667 tttgattacagcaacaacaatgtcgccaatataagcatatcgtcgattactagc---tcc 5611 Query: 367 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 426 || || |||||||||||||| || || ||||| || || || |||||||| ||| | || Sbjct: 5610 taggattcgaatacacatcagttcacgtgctccgctgttatccgctacattcaaatgagt 5551 Query: 427 ctgaggttgaatcatattatttt 449 |||||||||||||||| ||||| Sbjct: 5550 ttgaggttgaatcatatcatttt 5528
>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1046_F10 Length = 118472 Score = 141 bits (71), Expect = 3e-30 Identities = 126/143 (88%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 92 gaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcga 151 ||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| | | Sbjct: 87867 gaaactattttagtaaaattcaattctctcaattactcgacgatcgcgccaaaaacgcaa 87808 Query: 152 gttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggatt 211 ||||| ||||| || ||||||| | ||| ||| ||| ||||||||||||||||| ||| Sbjct: 87807 gttccatttggatttccttttt-actaatgatatccgttgcattgtcatcatagcgtatt 87749 Query: 212 attataccgtcttcgcatttgaa 234 ||||||||||||||||||||||| Sbjct: 87748 attataccgtcttcgcatttgaa 87726
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 139 bits (70), Expect = 1e-29 Identities = 306/382 (80%), Gaps = 7/382 (1%) Strand = Plus / Minus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| || || ||||||||||||||||| || ||||| || | ||||||||| Sbjct: 45042 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcg 44983 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| || ||| ||||| ||||||||||||||| || |||| || |||||| | |||||| Sbjct: 44982 ggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgc 44923 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 ||||| |||||||| ||||||||||| | | ||| | ||||||||| ||||| Sbjct: 44922 cgcattatcatcatactttattattataccattactacgttttagttctttacaagtacg 44863 Query: 250 tacaattacagctcgaattacttcggatctttctagag--gcatttggggcaatgcgtct 307 |||||||||||| | || ||||| |||||||||| || | |||||| | ||| | | Sbjct: 44862 tacaattacagccctgatcacttcagatctttctaaagatgaatttggtac--tgctttt 44805 Query: 308 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 367 |||||||||||||||| || ||||||||| |||||| || |||||| ||| |||| Sbjct: 44804 ttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagc---tcct 44748 Query: 368 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 427 |||| ||||||||||||||||| || ||||| ||||| || |||||||||||| ||| Sbjct: 44747 atgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtt 44688 Query: 428 tgaggttgaatcatattatttt 449 |||||||||||||||| ||||| Sbjct: 44687 tgaggttgaatcatatcatttt 44666
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 125 bits (63), Expect = 2e-25 Identities = 177/215 (82%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| || || ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 79709 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 79768 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| || || | ||| | ||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 79769 ggcgattgcacaaaagattcgagttccttttggatttccttcttgatcaatgacaactgc 79828 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||| |||||||| | ||||||||||||| | ||||| ||||||||| ||||| Sbjct: 79829 agcattatcatcatactgaattattataccgttgctacgtttgagttctttacaagtacg 79888 Query: 250 tacaattacagctcgaattacttcggatctttcta 284 |||||||||||||| || ||||| |||||||||| Sbjct: 79889 tacaattacagctctgatcacttctgatctttcta 79923 Score = 81.8 bits (41), Expect = 2e-12 Identities = 118/143 (82%), Gaps = 3/143 (2%) Strand = Plus / Plus Query: 307 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 366 ||||||||||||||||| || ||||||||| ||||||||| |||||| ||| ||| Sbjct: 79946 tttgattacagcaacaacaatgtcaccaatataagcatatcgtcgattactagc---tcc 80002 Query: 367 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 426 || || |||||||||||||| || || ||||| ||||| || |||||||| ||| | || Sbjct: 80003 taggattcgaatacacatcagttcgcgtgctccgctattatcagctacattcaaatgagt 80062 Query: 427 ctgaggttgaatcatattatttt 449 |||||||||||||||| ||||| Sbjct: 80063 ttgaggttgaatcatatcatttt 80085
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 123 bits (62), Expect = 7e-25 Identities = 119/138 (86%) Strand = Plus / Plus Query: 65 agtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaat 124 |||| |||||||||||| ||||| |||||||||||||| || |||||||||| ||||||| Sbjct: 60553 agtacttataatacttcgggagccaatgaaactattttcgtgaaattcaattgtctcaat 60612 Query: 125 tcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattata 184 |||| |||| || ||||||||||||||||||||||| || |||| |||||||| | | Sbjct: 60613 tcctgagcaaccggaccaaaaactcgagttccttttggatttccttcctgatcaatgaca 60672 Query: 185 accgcagcattgtcatca 202 || || |||||||||||| Sbjct: 60673 acggctgcattgtcatca 60690 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 362 gctcctatgactcgaatacacatcaattttcgagctccact 402 ||||||| |||||||||||||| | |||||| |||||||| Sbjct: 60847 gctcctagaactcgaatacacattatttttcgggctccact 60887
>emb|X68048.1|CHPVHISG Phaseolus vulgaris chloroplast DNA for tRNA-His gene region Length = 1698 Score = 117 bits (59), Expect = 4e-23 Identities = 176/215 (81%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| || || ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 954 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 1013 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| || |||| ||| | ||||||||||||||| || |||| ||||||||||| ||| || Sbjct: 1014 ggcgattgcgcaaaagattcgagttccttttggatttccttcttgatcaattacaactgc 1073 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||| |||||||| | ||||||||||||| | ||| | || |||||| || || Sbjct: 1074 agcattatcatcatactgaattattataccgttgctacgttttagttgtttacaagtccg 1133 Query: 250 tacaattacagctcgaattacttcggatctttcta 284 |||||||||||||| || ||||| |||||||||| Sbjct: 1134 tacaattacagctctgatcacttctgatctttcta 1168 Score = 40.1 bits (20), Expect = 8.1 Identities = 32/36 (88%) Strand = Plus / Plus Query: 414 catttaaaagggtctgaggttgaatcatattatttt 449 |||||||| | || |||||||||||||||| ||||| Sbjct: 1296 catttaaatgagtttgaggttgaatcatatcatttt 1331
>gb|AC133862.6| Medicago truncatula clone mth2-30d7, complete sequence Length = 130054 Score = 115 bits (58), Expect = 2e-22 Identities = 249/310 (80%), Gaps = 7/310 (2%) Strand = Plus / Plus Query: 142 aaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatc 201 ||||| ||||||||||||||| || |||| || |||||| | |||||| ||||| ||||| Sbjct: 30545 aaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatc 30604 Query: 202 atagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagc 261 ||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| Sbjct: 30605 atactttattattataccattactacgttttagttctttacaagtacgtacaattacagc 30664 Query: 262 tcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagca 319 | || ||||| |||||||||| || | |||||| | ||| | ||||||||||||| Sbjct: 30665 cctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagca 30722 Query: 320 acaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaata 379 |||| || ||||||||| |||||| || |||||| ||| |||||||| ||||||| Sbjct: 30723 acaacaatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaata 30779 Query: 380 cacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatc 439 |||||||||| || ||||| ||||| || |||||||||||| ||| |||||||||||| Sbjct: 30780 cacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatc 30839 Query: 440 atattatttt 449 |||| ||||| Sbjct: 30840 atatcatttt 30849
>gb|AC124957.18| Medicago truncatula clone mth2-15k14, complete sequence Length = 140624 Score = 115 bits (58), Expect = 2e-22 Identities = 249/310 (80%), Gaps = 7/310 (2%) Strand = Plus / Minus Query: 142 aaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatc 201 ||||| ||||||||||||||| || |||| || |||||| | |||||| ||||| ||||| Sbjct: 114958 aaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatc 114899 Query: 202 atagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagc 261 ||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| Sbjct: 114898 atactttattattataccattactacgttttagttctttacaagtacgtacaattacagc 114839 Query: 262 tcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagca 319 | || ||||| |||||||||| || | |||||| | ||| | ||||||||||||| Sbjct: 114838 cctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagca 114781 Query: 320 acaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaata 379 |||| || ||||||||| |||||| || |||||| ||| |||||||| ||||||| Sbjct: 114780 acaacaatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaata 114724 Query: 380 cacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatc 439 |||||||||| || ||||| ||||| || |||||||||||| ||| |||||||||||| Sbjct: 114723 cacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatc 114664 Query: 440 atattatttt 449 |||| ||||| Sbjct: 114663 atatcatttt 114654
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 115 bits (58), Expect = 2e-22 Identities = 118/138 (85%) Strand = Plus / Plus Query: 65 agtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaat 124 |||| |||||| ||||| ||||| |||||||||||||| || |||||||||| ||||||| Sbjct: 58649 agtacttataagacttcgggagccaatgaaactattttagtgaaattcaattgtctcaat 58708 Query: 125 tcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattata 184 |||| |||| || ||||||||||||||||||||||| || |||| |||||||| | | Sbjct: 58709 tcctgagcaaccggaccaaaaactcgagttccttttggatttccttcctgatcaatgaca 58768 Query: 185 accgcagcattgtcatca 202 || || |||||||||||| Sbjct: 58769 acggctgcattgtcatca 58786 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 362 gctcctatgactcgaatacacatcaattttcgagctccact 402 ||||||| |||||||||||||| | |||||| |||||||| Sbjct: 58943 gctcctagaactcgaatacacattatttttcgggctccact 58983
>gb|M60180.1|OBECPRPB O.ammophila ribosomal protein L14 and S8 (rpl14, rps8) genes, 5' end and 3' end Length = 625 Score = 97.6 bits (49), Expect = 4e-17 Identities = 82/93 (88%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||| ||||||||||||||||| || ||| | || ||||||||||| | Sbjct: 524 ttataatacctcaggtgctaatgaaactattttagtgaaacttaactctctcaattcgtg 583 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgg 162 ||||||||| ||||||||||| ||||||||||| Sbjct: 584 ggcaatcgcaccaaaaactcgggttccttttgg 616
>dbj|AB077366.1| Iris bungei plastid DNA, intron region Length = 576 Score = 93.7 bits (47), Expect = 6e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgc 473 |||||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||| Sbjct: 568 catttaaaagggtctgaggttgaatcatatcatttttatttgaatctgttatttcaatgc 509 Query: 474 aaa 476 ||| Sbjct: 508 aaa 506
>gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome Length = 165372 Score = 91.7 bits (46), Expect = 2e-15 Identities = 106/126 (84%) Strand = Plus / Minus Query: 77 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatc 136 |||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| Sbjct: 41481 acttcaggagctaaagaaactattttagtaaaatttaagtctctcaattctctggcaact 41422 Query: 137 gcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattg 196 | ||||||||||| |||||| |||| ||||||| ||||| || | |||||||||||| Sbjct: 41421 ggaccaaaaactcgtgttcctcttggattgccttcttgattgatgacaaccgcagcatta 41362 Query: 197 tcatca 202 |||||| Sbjct: 41361 tcatca 41356 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 374 cgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggt 433 ||||||||||| | ||||||||||| || ||||| |||||||||||| | ||||||| Sbjct: 41187 cgaatacacatgagctttcgagctccgctgttgtcggctacatttaaataagactgaggt 41128 Query: 434 tgaatcat 441 |||||||| Sbjct: 41127 tgaatcat 41120
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 87.7 bits (44), Expect = 4e-14 Identities = 113/136 (83%) Strand = Plus / Plus Query: 67 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 126 ||||||||| ||||| |||||||| ||||||||||| |||||||| ||||||| ||||| Sbjct: 76250 tatttataaaacttctggagctaacgaaactattttagtaaaattagattctcttaattc 76309 Query: 127 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 186 ||||| | ||||||||||||||||||||||| || |||| ||||| ||| | ||| Sbjct: 76310 tctagcaattggaccaaaaactcgagttccttttggatttccttcttgattaataacaac 76369 Query: 187 cgcagcattgtcatca 202 || ||||| |||||| Sbjct: 76370 tgctgcattatcatca 76385 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 364 tcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaag 423 |||||| |||||||| ||||| | |||||||||||||||||| ||||| ||||||||| Sbjct: 76544 tcctataactcgaatgcacattagttttcgagctccactattatctgcaacatttaaata 76603 Query: 424 ggtctgaggttgaatcat 441 || |||||||||||||| Sbjct: 76604 agtttgaggttgaatcat 76621 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 233 aattctttacatgtacgtacaattacagctc 263 ||||||||||| ||||||||||||||||||| Sbjct: 76416 aattctttacacgtacgtacaattacagctc 76446
>emb|AL663020.4|OSJN00220 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0049H08, complete sequence Length = 186642 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 246 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggg 296 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 94927 tacgtacaattacagctcaaattacttcggatctttccagaggcatttggg 94877
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 85.7 bits (43), Expect = 2e-13 Identities = 114/135 (84%), Gaps = 2/135 (1%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||||||||| ||||| ||||||||||| |||||||| |||| | ||||| | Sbjct: 79910 tttataatacttcaggtgctaacgaaactattttagtaaaattagattcacgtaattc-t 79968 Query: 129 cg-gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 187 || |||| | ||||||||||||||||||||| || || |||| ||||| ||| ||||| Sbjct: 79969 cgtgcaacagggccaaaaactcgagttcctttaggatttccttcttgattaataataact 80028 Query: 188 gcagcattgtcatca 202 |||||||| |||||| Sbjct: 80029 gcagcattatcatca 80043 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 377 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 436 |||||||| ||||| || ||||||||||| || |||||||||||| || ||||||||| Sbjct: 80215 atacacattaatttgcgcgctccactattatcagctacatttaaataagtttgaggttga 80274 Query: 437 atcat 441 ||||| Sbjct: 80275 atcat 80279
>dbj|AB087469.1| Anthoceros formosae chloroplast rpl14 mRNA for ribosomal protein L14, complete cds Length = 460 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 373 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 421 |||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 322 tcgaatacacatcagttttcgagctccactgttgtctgctacatttaaa 370 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 235 ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcat 291 ||||||||| ||||||||||||||||||| || |||||| ||| ||| ||||||||| Sbjct: 187 ttctttacaagtacgtacaattacagctctaactacttctgatttttttagaggcat 243 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ccaaaaactcgagttccttt 159 |||||||||||||||||||| Sbjct: 92 ccaaaaactcgagttccttt 111
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 373 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 421 |||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 100021 tcgaatacacatcagttttcgagctccactgttgtctgctacatttaaa 100069 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 235 ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcat 291 ||||||||| ||||||||||||||||||| || |||||| ||| ||| ||||||||| Sbjct: 99886 ttctttacaagtacgtacaattacagctctaactacttctgatttttttagaggcat 99942 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ccaaaaactcgagttccttt 159 |||||||||||||||||||| Sbjct: 99791 ccaaaaactcgagttccttt 99810
>gb|M60179.1|OBECPRPA O.ammophila ribosomal protein L14 and L16 (rpl14, rpl16) genes, 3' end and 5' end Length = 542 Score = 81.8 bits (41), Expect = 2e-12 Identities = 112/135 (82%), Gaps = 3/135 (2%) Strand = Plus / Plus Query: 315 cagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactc 374 |||||||||||| ||||| ||| |||||||||| |||||| ||| ||| |||| || Sbjct: 1 cagcaacaataatgtcaccgatatgagcatatcgacgattactagc---tccgatgattc 57 Query: 375 gaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggtt 434 |||||||||| |||| |||||| ||||| || || || ||||| ||| |||| ||||||| Sbjct: 58 gaatacacattaattctcgagccccactgttatccgcgacattcaaacgggtttgaggtt 117 Query: 435 gaatcatattatttt 449 ||||||||| ||||| Sbjct: 118 gaatcatatcatttt 132
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 79.8 bits (40), Expect = 9e-12 Identities = 49/52 (94%) Strand = Plus / Minus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctct 120 ||||||||||||||||||| |||||||||||||| |||||||| |||||||| Sbjct: 5586 tttataatacttcaggagccaatgaaactattttagtaaaattgaattctct 5535 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 373 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 432 |||||||||||| |||| ||||||||| |||||||||||||| ||| || ||||| Sbjct: 5285 tcgaatacacattggttttttagctccactgttgtctgctacattcaaatacgtttgagg 5226 Query: 433 ttgaatcatatt 444 |||||||||||| Sbjct: 5225 ttgaatcatatt 5214
>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06, complete sequence Length = 126447 Score = 77.8 bits (39), Expect = 4e-11 Identities = 73/84 (86%), Gaps = 4/84 (4%) Strand = Plus / Plus Query: 237 ctttacatgtacgtacaattacagctcgaattact----tcggatctttctagaggcatt 292 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 89363 ctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcatt 89422 Query: 293 tggggcaatgcgtctttgattaca 316 | ||||| ||| |||||| ||||| Sbjct: 89423 ttgggcactgcttctttggttaca 89446
>dbj|AP004038.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_H01 Length = 121377 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 124 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 183 ||||||||| |||| ||||||||| |||||||||||||| || | ||||||| |||| || Sbjct: 117502 ttcctcggcgatcgtgccaaaaacgcgagttccttttggatttcttttttgaccaatgat 117561 Query: 184 aaccgcagcattgtcatc 201 ||||| ||||||||||| Sbjct: 117562 aaccgttgcattgtcatc 117579
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 73.8 bits (37), Expect = 6e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 373 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 432 |||||||||||||||||||||||||||||| ||||||| ||| |||||| | ||||| Sbjct: 79713 tcgaatacacatcaattttcgagctccactgttgtctgttacttttaaataactttgagg 79772 Query: 433 ttgaatcat 441 ||||||||| Sbjct: 79773 ttgaatcat 79781 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 78 cttcaggagctaatgaaactattttggtaaaatt 111 ||||||||||||| || |||||||| |||||||| Sbjct: 79421 cttcaggagctaaagatactattttagtaaaatt 79454
>dbj|AB077439.1| Sophora alopecuroides plastid DNA, intron region Length = 569 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaatcatattatttt 449 |||||||||||||||||||||||||||||||||||| Sbjct: 561 catttaaaagggtctgaggttgaatcatattatttt 526
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 69.9 bits (35), Expect = 9e-09 Identities = 101/124 (81%), Gaps = 8/124 (6%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 199 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 127299 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 127248 Query: 200 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 259 ||||| || ||||| ||||||| || | ||||| |||||||||||||||||||||||| Sbjct: 127247 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattact 127188 Query: 260 gctc 263 |||| Sbjct: 127187 gctc 127184 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgat 176 ||||||||||||||||||||||| || |||| ||||| Sbjct: 126033 ccaaaaactcgagttccttttggatttccttcttgat 125997 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgat 176 ||||||||||||||||||||||| || |||| ||||| Sbjct: 121959 ccaaaaactcgagttccttttggatttccttcttgat 121923
>gb|DQ069422.1| Ginkgo biloba ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 67.9 bits (34), Expect = 4e-08 Identities = 108/130 (83%), Gaps = 2/130 (1%) Strand = Plus / Minus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg-g 131 ||||||||| ||||| |||| ||||||||| || ||||| |||| ||||||||| ||| | Sbjct: 366 taatacttcgggagccaatggaactatttttgtgaaattaaattgtctcaattc-tcgag 308 Query: 132 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 191 ||| | |||||||||||||||||||| || || |||| |||||||| | ||| || | Sbjct: 307 caactgaaccaaaaactcgagttcctttcggatttccttcctgatcaatgacaactgctg 248 Query: 192 cattgtcatc 201 |||||||||| Sbjct: 247 cattgtcatc 238
>gb|M80799.1|VIRCPRPL Vigna unguiculata chloroplast ribosomal protein (L16 and L14) genes, 3' and 5' end respectively Length = 1268 Score = 65.9 bits (33), Expect = 1e-07 Identities = 116/143 (81%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 307 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 366 ||||||||||||||||| || || |||||| ||||||||| |||||| ||| ||| Sbjct: 1258 tttgattacagcaacaacaatgtcgccaatataagcatatcgtcgattactagc---tcc 1202 Query: 367 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 426 || || |||||||||||||| || || ||||| || || || |||||||| ||| | || Sbjct: 1201 taggattcgaatacacatcagttcacgtgctccgctgttatccgctacattcaaatgagt 1142 Query: 427 ctgaggttgaatcatattatttt 449 |||||||||||||||| ||||| Sbjct: 1141 ttgaggttgaatcatatcatttt 1119
>dbj|AB077337.1| Saussurea involucrata plastid DNA, intron region Length = 541 Score = 63.9 bits (32), Expect = 6e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaatcatattatttt 449 |||||||||||||||||||||||||||||| ||||| Sbjct: 533 catttaaaagggtctgaggttgaatcatatgatttt 498
>emb|X03834.1|CHSOL16 Spirodela oligorhiza chloroplast gene for ribosomal protein L16 Length = 2064 Score = 63.9 bits (32), Expect = 6e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 410 gctacatttaaaagggtctgaggttgaatcatattatttt 449 |||||||| ||||||||||||||||||||||||| ||||| Sbjct: 2049 gctacattcaaaagggtctgaggttgaatcatatcatttt 2010
>gb|DQ396875.1| Scenedesmus obliquus strain UTEX 393 chloroplast, complete genome Length = 161452 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 371 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 421 |||||||||||||| ||||| ||||| |||||||| || |||||||||||| Sbjct: 140455 actcgaatacacattaatttgcgagcaccactattatcagctacatttaaa 140505 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 77 acttcaggagctaatgaaactattttggtaaaatt 111 |||||||||||||| ||||| ||||| |||||||| Sbjct: 140167 acttcaggagctaaagaaacaatttttgtaaaatt 140201
>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1175_B01 Length = 96191 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 105 taaaattcaattctctcaattcctcggcaatcgcgccaaaaac 147 ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 20850 taaaattcaatactctcgattcctcggcgatcgcgccaaaaac 20808
>gb|DQ291132.1| Oltmannsiellopsis viridis chloroplast, complete genome Length = 151933 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 377 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 436 |||||||| |||||||| ||||||||||| ||||| || |||| | || ||||||||| Sbjct: 16479 atacacattaattttcgtgctccactattatctgcgacgtttacatatgtttgaggttga 16420 Query: 437 atcatatta 445 ||||||||| Sbjct: 16419 atcatatta 16411
>dbj|AB077335.1| Allium altaicum plastid DNA, intron region Length = 551 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaatcata 442 ||||||||||||||||||||||||||||| Sbjct: 543 catttaaaagggtctgaggttgaatcata 515
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 374 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 421 |||||||||||||| || |||||||| ||||| |||||||||| |||| Sbjct: 76668 cgaatacacatcaacttgcgagctccgctattatctgctacatctaaa 76715
>tpg|BK000554.2| TPA: TPA_inf: Chlamydomonas reinhardtii chloroplast, complete genome Length = 203828 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 374 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 421 ||||||||||| |||| ||||| |||||||| ||||||||||||||| Sbjct: 28989 cgaatacacattaattcacgagcaccactattatctgctacatttaaa 28942 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 237 ctttacatgtacgtacaattacagctcg 264 |||||| |||||||||||| |||||||| Sbjct: 29123 ctttacgtgtacgtacaataacagctcg 29096
>dbj|AB077365.1| Iris dichotoma plastid DNA, intron region Length = 566 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaatcat 441 |||||||||||||||||||||||||||| Sbjct: 558 catttaaaagggtctgaggttgaatcat 531
>emb|X14062.1|CHCRL14 Chlamydomonas reinhardtii plasti gene for ribosomal protein L14 Length = 988 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 374 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 421 ||||||||||| |||| ||||| |||||||| ||||||||||||||| Sbjct: 588 cgaatacacattaattcacgagcaccactattatctgctacatttaaa 541 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 237 ctttacatgtacgtacaattacagctcg 264 |||||| |||||||||||| |||||||| Sbjct: 722 ctttacgtgtacgtacaataacagctcg 695
>gb|M30487.1|CPACYRP Cyanophora paradoxa ribosomal protein l22 (rpl22) gene, partial cds; ribosomal protein s3 (rps3), ribosomal protein l16 (rpl16), ribosomal protein l7 (rpl7), ribosomal protein l14 (rpl14), ribosomal protein l5 (rpl5), ribosomal protein s8 (rps8), ribosomal protein l6 (rpl6), ribosomal protein l18 (rpl18), ribosomal protein s5 (rps5), and ribosomal protein secY (secY) genes, complete cds; and ORF gene, partial cds Length = 6468 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 371 actcgaatacacatcaattttcgagctccactatt 405 |||||||||||||| ||||| |||||||||||||| Sbjct: 1744 actcgaatacacattaatttacgagctccactatt 1710 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 71 tataatacttcaggagctaatgaaactattttggtaaaatt 111 ||||||||||| |||||||| |||| ||||| |||||||| Sbjct: 2041 tataatacttccggagctaaagaaataatttttgtaaaatt 2001 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 313 tacagcaacaataacatcaccaatacgagcata 345 |||||| ||||| ||||||||||| |||||||| Sbjct: 1799 tacagcgacaattacatcaccaattcgagcata 1767
>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137492 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 96 ctattttggtaaaattcaattctctcaattc 126 ||||||| ||||||||||||||||||||||| Sbjct: 45211 ctattttagtaaaattcaattctctcaattc 45181
>gb|U30821.1|CPU30821 Cyanophora paradoxa cyanelle, complete genome Length = 135599 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 371 actcgaatacacatcaattttcgagctccactatt 405 |||||||||||||| ||||| |||||||||||||| Sbjct: 52478 actcgaatacacattaatttacgagctccactatt 52512 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 313 tacagcaacaataacatcaccaatacgagcata 345 |||||| ||||| ||||||||||| |||||||| Sbjct: 52423 tacagcgacaattacatcaccaattcgagcata 52455 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 71 tataatacttcaggagctaatgaaactattttggtaaaatt 111 ||||||||||| |||||||| |||| ||||| |||||||| Sbjct: 52181 tataatacttccggagctaaagaaataatttttgtaaaatt 52221
>gb|AF050665.1|AF050665 Spirogyra maxima tRNA-Ile gene, complete sequence; and ribosomal protein L23 (rpl23), ribosomal protein L2 (rpl2), ribosomal protein S19 (rps19), ribosomal protein L22 (rpl22), ribosomal protein S3 (rps3), ribosomal protein L16 (rpl16), ribosomal protein L14 (rpl14), ribosomal protein S8 (rps8), initiation factor A (infA), ribosomal protein L36 (rpl36), ribosomal protein S11 (rps11), and RNA polymerase alpha subunit (rpoA) genes, complete cds, chloroplast genes for chloroplast products Length = 8794 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 77 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 126 |||||||||||||| || ||||| || |||||||| |||||||| ||||| Sbjct: 5584 acttcaggagctaaagatactatcttagtaaaatttaattctcttaattc 5535 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 374 cgaatacacatcaattttcgagctccact 402 ||||||||||| ||||| ||||||||||| Sbjct: 5290 cgaatacacattaatttacgagctccact 5262
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 377 atacacatcaattttcgagctccactattgtctgctacatt 417 |||||||||||||| ||||| || ||||||||||| ||||| Sbjct: 879333 atacacatcaatttacgagcgccgctattgtctgcgacatt 879293
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 377 atacacatcaattttcgagctccactattgtctgctacatt 417 |||||||||||||| ||||| || ||||||||||| ||||| Sbjct: 5047012 atacacatcaatttacgagcgccgctattgtctgcgacatt 5047052
>gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome Length = 157089 Score = 48.1 bits (24), Expect = 0.033 Identities = 45/52 (86%) Strand = Plus / Minus Query: 390 ttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcat 441 |||||||||||||||| || |||||||||||| | |||||||||||||| Sbjct: 94493 ttcgagctccactattatcggctacatttaaataagattgaggttgaatcat 94442
>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007C02, complete sequence Length = 148265 Score = 48.1 bits (24), Expect = 0.033 Identities = 36/40 (90%) Strand = Plus / Plus Query: 321 caataacatcaccaatacgagcatatcgctgattaccagc 360 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 98741 caataacgtcaccaatatgagcatatcagtgattaccagc 98780
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.033 Identities = 36/40 (90%) Strand = Plus / Minus Query: 321 caataacatcaccaatacgagcatatcgctgattaccagc 360 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 11796144 caataacgtcaccaatatgagcatatcagtgattaccagc 11796105
>dbj|AB077333.1| Ferula feruloides plastid DNA, intron region Length = 531 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaa 437 |||||||||||||||||||||||| Sbjct: 523 catttaaaagggtctgaggttgaa 500
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.033 Identities = 36/40 (90%) Strand = Plus / Minus Query: 321 caataacatcaccaatacgagcatatcgctgattaccagc 360 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 11874555 caataacgtcaccaatatgagcatatcagtgattaccagc 11874516
>ref|NM_128441.3| Arabidopsis thaliana structural constituent of ribosome AT2G28820 mRNA, complete cds Length = 1156 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 311 attacagcaacaataacatcaccaatacgagcata 345 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 999 attacggcaacaacaacatcaccaatatgagcata 965
>emb|AL359081.10| Human DNA sequence from clone RP11-541F9 on chromosome 1, complete sequence Length = 109288 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 90 atgaaactattttggtaaaattcaatt 116 |||||||||||||||||| |||||||| Sbjct: 91500 atgaaactattttggtaacattcaatt 91474
>gb|AC005727.3| Arabidopsis thaliana chromosome 2 clone F8N16 map mi54, complete sequence Length = 107097 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 311 attacagcaacaataacatcaccaatacgagcata 345 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 38089 attacggcaacaacaacatcaccaatatgagcata 38123
>gb|AY219111.2| Arabidopsis thaliana hypothetical protein (At2g28820/F8N16.11) mRNA, complete cds Length = 1179 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 311 attacagcaacaataacatcaccaatacgagcata 345 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 1002 attacggcaacaacaacatcaccaatatgagcata 968
>dbj|AP000606.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MTO24 Length = 82360 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 440 atattattttgatttcaatttgttatt 466 |||||||||||||||||| |||||||| Sbjct: 13778 atattattttgatttcaaattgttatt 13752
>dbj|AB028608.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K20I9 Length = 43500 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 75 atacttcaggagctaatgaaactattt 101 |||| |||||||||||||||||||||| Sbjct: 22874 atacctcaggagctaatgaaactattt 22900
>gb|AC157473.1| Medicago truncatula chromosome 7 BAC clone mte1-11e4, complete sequence Length = 125310 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 415 atttaaaagggtctgaggttgaa 437 ||||||||||||||||||||||| Sbjct: 65424 atttaaaagggtctgaggttgaa 65402
>gb|AC132335.3| Mus musculus BAC clone RP24-230C24 from chromosome 10, complete sequence Length = 180642 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 476 aaggatgaaagaaatattgtctttcc 501 |||||||||||||||||| ||||||| Sbjct: 116209 aaggatgaaagaaatattttctttcc 116234
>dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20 Length = 91193 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 442 attattttgatttcaatttgtt 463 |||||||||||||||||||||| Sbjct: 90746 attattttgatttcaatttgtt 90725
>dbj|AB077440.1| Incarvillea potaninii plastid DNA, intron region Length = 536 Score = 44.1 bits (22), Expect = 0.52 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaatcatat 443 |||||||||||| ||||||||||||||||| Sbjct: 528 catttaaaaggg-ctgaggttgaatcatat 500
>dbj|AB077334.1| Zygophyllum pterocarpum plastid DNA, intron region Length = 553 Score = 44.1 bits (22), Expect = 0.52 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaatcatat 443 |||||||||||| ||||||||||||||||| Sbjct: 545 catttaaaaggg-ctgaggttgaatcatat 517
>gb|AC166165.3| Mus musculus BAC clone RP23-381I17 from chromosome 10, complete sequence Length = 217425 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 476 aaggatgaaagaaatattgtctttcc 501 |||||||||||||||||| ||||||| Sbjct: 184750 aaggatgaaagaaatattttctttcc 184775
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 ccttttgggttgcctttttga 175 ||||||||||||||||||||| Sbjct: 1617545 ccttttgggttgcctttttga 1617565 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 70 ttataatacttcaggagctaatgaaactatttt 102 |||||| ||||||||||||| |||||| ||||| Sbjct: 352059 ttataaaacttcaggagctagtgaaacgatttt 352027
>emb|CT009479.4| M.truncatula DNA sequence from clone MTH2-164E3 on chromosome 3, complete sequence Length = 133351 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 465 tttcaatgcaaaaggatgaaagaaa 489 ||||||| ||||||||||||||||| Sbjct: 58265 tttcaatacaaaaggatgaaagaaa 58241
>gb|AC132083.3| Mus musculus BAC clone RP24-540G23 from chromosome 5, complete sequence Length = 158764 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 acaatctactaatattaattc 42 ||||||||||||||||||||| Sbjct: 90572 acaatctactaatattaattc 90592
>emb|CR753838.10| Zebrafish DNA sequence from clone DKEY-189H5 in linkage group 5, complete sequence Length = 188660 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 atgaaactattttggtaaaat 110 ||||||||||||||||||||| Sbjct: 13532 atgaaactattttggtaaaat 13552
>emb|AL606489.26| Human DNA sequence from clone RP11-739N20 on chromosome 1 Contains the 5' end of the gene for phosphoinositol 3-phosphate-binding protein-3 (PEPP3), two novel genes, the PPP1R15B gene for protein phosphatase 1, regulatory (inhibitor) subunit 15B, the PIK3C2B gene for phosphoinositide-3-kinase, class 2, beta polypeptide, a small nuclear ribonucleoprotein polypeptide F (SNRPF) pseudogene and three CpG islands, complete sequence Length = 167079 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 493 tgtctttccagaaagaaaaac 513 ||||||||||||||||||||| Sbjct: 87284 tgtctttccagaaagaaaaac 87304
>ref|XM_503361.1| Yarrowia lipolytica CLIB122, YALI0E00154g predicted mRNA Length = 2382 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 acagcaacaataacatcacca 334 ||||||||||||||||||||| Sbjct: 263 acagcaacaataacatcacca 283
>emb|AL359821.11| Human DNA sequence from clone RP11-175G14 on chromosome 1 Contains part of the NEGR1 gene for neuronal growth regulator 1 and part of a novel gene, complete sequence Length = 117951 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 482 gaaagaaatattgtctttccagaaa 506 |||||||||||||||||| |||||| Sbjct: 43956 gaaagaaatattgtctttacagaaa 43980
>emb|AL355355.25| Human DNA sequence from clone RP11-730A19 on chromosome 10 Contains the 5' end of a novel gene (DKFZP761F241) (FLJ20925 FLJ38473), a ribosomal protein L5 (RPL5) pseudogene, the OPTN gene for optineurin, a small nuclear ribonucleoprotein polypeptide G (SNRPG) pseudogene, a pseudogene similar to part of COX10 homolog, cytochrome c oxidase assembly protein heme A: farnesyltransferase (yeast) (COX10), a novel pseudogene (FLJ10648 KIAA1525), a ribosomal protein L36A (RPL36A) pseudogene, the 5' end of the MCM10 gene for MCM10 minichromosome maintenance deficient 10 (S. cerevisiae), a pseudogene similar to part of chromodomain protein Y chromosome 1 (CDY1) and two CpG islands, complete sequence Length = 196203 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 atttcaatttgttatttcaat 471 ||||||||||||||||||||| Sbjct: 148025 atttcaatttgttatttcaat 148045
>emb|AL122003.17|HSJ659I19 Human DNA sequence from clone RP4-659I19 on chromosome 1q42.11-42.3 Contains a chromosome 9 open reading frame 78 (C9orf78) pseudogene, a novel gene (MGC13186), the 3' end of a novel gene (FLJ11383) and a CpG island, complete sequence Length = 155065 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 aatgaaactattttggtaaaa 109 ||||||||||||||||||||| Sbjct: 66463 aatgaaactattttggtaaaa 66483
>emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 1/7 Length = 340806 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactatttt 102 ||||||||||||||| || |||||||| ||||| Sbjct: 109779 ttataatacttcaggtgccaatgaaacgatttt 109811
>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04, complete sequence Length = 136713 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 452 tttcaatttgttatttcaatgcaaa 476 ||||||||||| ||||||||||||| Sbjct: 83648 tttcaatttgtaatttcaatgcaaa 83672
>gb|AY835431.1| Pseudendoclonium akinetum chloroplast, complete genome Length = 195867 Score = 42.1 bits (21), Expect = 2.1 Identities = 57/69 (82%) Strand = Plus / Minus Query: 374 cgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggt 433 ||||| |||||||||||| || || ||||| || ||||||||||||| || |||||| Sbjct: 31433 cgaatgcacatcaatttttttgcaccgctattatcagctacatttaaaatagtttgaggt 31374 Query: 434 tgaatcata 442 |||||||| Sbjct: 31373 cgaatcata 31365
>gb|AC025821.7| Homo sapiens BAC clone RP11-472F4 from 4, complete sequence Length = 178378 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 475 aaaggatgaaagaaatattgt 495 ||||||||||||||||||||| Sbjct: 10896 aaaggatgaaagaaatattgt 10876
>dbj|AK034773.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430035O09 product:RAD17 homolog (S. pombe), full insert sequence Length = 2615 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 ttattttgatttcaatttgtt 463 ||||||||||||||||||||| Sbjct: 1994 ttattttgatttcaatttgtt 2014
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 70 ttataatacttcaggagctaatgaaactatttt 102 ||||||||||||||| || |||||||| ||||| Sbjct: 156967 ttataatacttcaggtgccaatgaaacgatttt 156935 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 444 tattttgatttcaatttgttattt 467 ||||||||||| |||||||||||| Sbjct: 1406237 tattttgattttaatttgttattt 1406214
>gb|AC109358.3| Homo sapiens BAC clone RP11-648D16 from 2, complete sequence Length = 49153 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 attttggtaaaattcaattct 118 ||||||||||||||||||||| Sbjct: 27739 attttggtaaaattcaattct 27719
>gb|AC073885.5| Homo sapiens BAC clone RP11-70L16 from 2, complete sequence Length = 120379 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 taaaattcaattctctcaatt 125 ||||||||||||||||||||| Sbjct: 93691 taaaattcaattctctcaatt 93671
>gb|AF283525.1|AF283519S7 Homo sapiens FIP2 gene, exons 11, 12 and 13 Length = 5047 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 atttcaatttgttatttcaat 471 ||||||||||||||||||||| Sbjct: 151 atttcaatttgttatttcaat 171
>dbj|AK120872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026M09, full insert sequence Length = 5675 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 452 tttcaatttgttatttcaatgcaaa 476 ||||||||||| ||||||||||||| Sbjct: 2487 tttcaatttgtaatttcaatgcaaa 2511
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactatttt 102 ||||||||||||||| || |||||||| ||||| Sbjct: 1801391 ttataatacttcaggtgccaatgaaacgatttt 1801423
>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence Length = 240928 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 atgaaactattttggtaaaat 110 ||||||||||||||||||||| Sbjct: 106739 atgaaactattttggtaaaat 106759
>gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome Length = 191028 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 374 cgaatacacatcaattttcgagctccactattgtctgctac 414 ||||||||||| | ||||| ||| |||||||| |||||||| Sbjct: 100999 cgaatacacattatttttctagcgccactattatctgctac 101039
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 acagcaacaataacatcacca 334 ||||||||||||||||||||| Sbjct: 6095 acagcaacaataacatcacca 6075
>gb|AC165159.2| Mus musculus BAC clone RP23-234N1 from chromosome 13, complete sequence Length = 215158 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 443 ttattttgatttcaatttgtt 463 ||||||||||||||||||||| Sbjct: 79695 ttattttgatttcaatttgtt 79675
>ref|XM_639569.1| Dictyostelium discoideum histidine kinase (DDB0185039), partial mRNA Length = 5211 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cagcaacaataacatcacca 334 |||||||||||||||||||| Sbjct: 1427 cagcaacaataacatcacca 1446
>ref|XM_639498.1| Dictyostelium discoideum histidine kinase DhkI (DDB0217151), partial mRNA Length = 5211 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cagcaacaataacatcacca 334 |||||||||||||||||||| Sbjct: 1427 cagcaacaataacatcacca 1446
>ref|XM_634860.1| Dictyostelium discoideum hypothetical protein (DDB0186277), partial mRNA Length = 4602 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 444 tattttgatttcaatttgttattt 467 ||||||||||||||||| |||||| Sbjct: 413 tattttgatttcaattttttattt 390
>gb|AC167973.4| Mus musculus BAC clone RP23-453B4 from chromosome 9, complete sequence Length = 182190 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 tctttccagaaagaaaaacc 514 |||||||||||||||||||| Sbjct: 127972 tctttccagaaagaaaaacc 127953
>gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188027 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tactagtatttataatactt 80 |||||||||||||||||||| Sbjct: 140243 tactagtatttataatactt 140224
>gb|AY681321.1| Agelena orientalis toxin-like structure Agel_24 precursor, mRNA, complete cds Length = 378 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 attttgatttcaatttgtta 464 |||||||||||||||||||| Sbjct: 245 attttgatttcaatttgtta 264
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 tctttgattacagcaacaat 324 |||||||||||||||||||| Sbjct: 129128 tctttgattacagcaacaat 129147
>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence Length = 141360 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 tattgtctgctacatttaaa 421 |||||||||||||||||||| Sbjct: 112737 tattgtctgctacatttaaa 112756
>emb|CT025560.9| Mouse DNA sequence from clone RP23-432N22 on chromosome 16, complete sequence Length = 212903 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 tctgctacatttaaaagggt 426 |||||||||||||||||||| Sbjct: 68129 tctgctacatttaaaagggt 68148
>emb|CR450788.7| Zebrafish DNA sequence from clone DKEY-15P23 in linkage group 12, complete sequence Length = 115480 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 gtcttcgcatttgaattctt 239 |||||||||||||||||||| Sbjct: 71969 gtcttcgcatttgaattctt 71950
>emb|BX005436.12| Zebrafish DNA sequence from clone DKEY-9A8 in linkage group 6, complete sequence Length = 168549 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tgattacagcaacaataaca 328 |||||||||||||||||||| Sbjct: 82901 tgattacagcaacaataaca 82920
>emb|Z76735.1|HS246O8 Human DNA sequence from clone RP1-246O8 on chromosome X, complete sequence Length = 175745 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 attaattctttgatctaaat 54 |||||||||||||||||||| Sbjct: 99502 attaattctttgatctaaat 99521
>emb|AL603882.13| Human DNA sequence from clone RP11-630I5 on chromosome 1 Contains the 5' end of the gene for microtubule associated testis specific serine/threonine protein kinase (MAST205), a ribosomal protein L6 (RPL6) pseudogene and a CpG island, complete sequence Length = 78745 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 aaatattgtctttccagaaa 506 |||||||||||||||||||| Sbjct: 30144 aaatattgtctttccagaaa 30163
>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence Length = 204620 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 tctttccagaaagaaaaacc 514 |||||||||||||||||||| Sbjct: 21328 tctttccagaaagaaaaacc 21309
>emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome; segment 7/7 Length = 318136 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 tcaatgcaaaaggatgaaag 486 |||||||||||||||||||| Sbjct: 72832 tcaatgcaaaaggatgaaag 72851
>gb|AC159379.14| Mus musculus 10 BAC RP23-210F14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226172 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 470 atgcaaaaggatgaaagaaatatt 493 ||||||||||| |||||||||||| Sbjct: 40830 atgcaaaaggaagaaagaaatatt 40853
>emb|AL627283.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 19/20 Length = 249050 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ttcctcggcaatcgcgccaa 143 |||||||||||||||||||| Sbjct: 190554 ttcctcggcaatcgcgccaa 190535
>gb|AC156991.9| Mus musculus chromosome 8, clone RP23-297F23, complete sequence Length = 164343 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 aagaaatattgtctttccag 503 |||||||||||||||||||| Sbjct: 135640 aagaaatattgtctttccag 135659
>emb|BX510930.15| Zebrafish DNA sequence from clone DKEY-91L18 in linkage group 14, complete sequence Length = 95848 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 aatcatattattttgatttc 455 |||||||||||||||||||| Sbjct: 64510 aatcatattattttgatttc 64491
>gb|CP000268.1| Rhodoferax ferrireducens DSM 15236 plasmid1, complete sequence Length = 257447 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 accaatacgagcatatcgct 350 |||||||||||||||||||| Sbjct: 204840 accaatacgagcatatcgct 204859
>gb|AC108100.2| Homo sapiens chromosome 5 clone RP11-125A21, complete sequence Length = 85231 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 atttcaatttgttatttcaa 470 |||||||||||||||||||| Sbjct: 32554 atttcaatttgttatttcaa 32573
>gb|AC010406.7| Homo sapiens chromosome 5 clone CTD-2154H6, complete sequence Length = 95089 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 catttgaattctttacatgt 246 |||||||||||||||||||| Sbjct: 65739 catttgaattctttacatgt 65720
>emb|BX664600.7| Zebrafish DNA sequence from clone CH211-112M13, complete sequence Length = 167489 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 attaattctttgatctaaat 54 |||||||||||||||||||| Sbjct: 80174 attaattctttgatctaaat 80193
>gb|AC159542.8| Mus musculus 10 BAC RP23-137B10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198525 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 470 atgcaaaaggatgaaagaaatatt 493 ||||||||||| |||||||||||| Sbjct: 197474 atgcaaaaggaagaaagaaatatt 197497
>gb|AC136037.2| Rattus norvegicus X BAC CH230-378N18 (Children's Hospital Oakland Research Institute) complete sequence Length = 98442 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 caattataaccgcagcattgtcat 200 ||||||||||| |||||||||||| Sbjct: 22762 caattataacctcagcattgtcat 22785
>gb|AC087254.2| Danio rerio clone 91J1, complete sequence Length = 77731 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 attaattctttgatctaaat 54 |||||||||||||||||||| Sbjct: 59268 attaattctttgatctaaat 59249
>gb|AF362371.1|AF362371 Dictyostelium discoideum histidine kinase DhkI (dhkI) gene, complete cds Length = 6074 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cagcaacaataacatcacca 334 |||||||||||||||||||| Sbjct: 1666 cagcaacaataacatcacca 1685
>gb|AC103567.2| Caenorhabditis elegans cosmid Y51F10, complete sequence Length = 89249 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 taatgaaactattttggtaaaatt 111 |||||||||| ||||||||||||| Sbjct: 60315 taatgaaacttttttggtaaaatt 60338
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 40.1 bits (20), Expect = 8.1 Identities = 38/44 (86%) Strand = Plus / Plus Query: 374 cgaatacacatcaattttcgagctccactattgtctgctacatt 417 ||||||||||| | |||| ||| |||||||| ||||||||||| Sbjct: 15771 cgaatacacattatttttttagcgccactattatctgctacatt 15814
>gb|AC116330.2| Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence Length = 132254 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 cagcaacaataacatcacca 334 |||||||||||||||||||| Sbjct: 42174 cagcaacaataacatcacca 42155
>gb|AC010423.8| Homo sapiens chromosome 5 clone CTD-2193G5, complete sequence Length = 183787 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 catttgaattctttacatgt 246 |||||||||||||||||||| Sbjct: 143582 catttgaattctttacatgt 143601
>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695H10 Length = 136883 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 acaatctactaatattaatt 41 |||||||||||||||||||| Sbjct: 34655 acaatctactaatattaatt 34674
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 acaatctactaatattaatt 41 |||||||||||||||||||| Sbjct: 159381 acaatctactaatattaatt 159400
>gb|AE016754.1| Mus musculus chromosome 10 high-growth region, section 2 of 2 of the complete sequence Length = 303688 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 470 atgcaaaaggatgaaagaaatatt 493 ||||||||||| |||||||||||| Sbjct: 256147 atgcaaaaggaagaaagaaatatt 256124
>emb|BX511028.13| Zebrafish DNA sequence from clone DKEY-161N17 in linkage group 20, complete sequence Length = 225010 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 attaattctttgatctaaat 54 |||||||||||||||||||| Sbjct: 146084 attaattctttgatctaaat 146065
>emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 on chromosome 3, complete sequence Length = 117153 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 tattttgatttcaatttgttattt 467 ||||||| |||||||||||||||| Sbjct: 28243 tattttgttttcaatttgttattt 28266
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ttcctcggcaatcgcgccaa 143 |||||||||||||||||||| Sbjct: 4645443 ttcctcggcaatcgcgccaa 4645424
>gb|AF041468.1| Guillardia theta complete plastid genome Length = 121524 Score = 40.1 bits (20), Expect = 8.1 Identities = 59/72 (81%) Strand = Plus / Minus Query: 377 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 436 |||||||| | |||| ||||||||| || || |||||| ||||| ||||||| |||| Sbjct: 103777 atacacattatttttttagctccactgttatcagctacagttaaataagtctgagtttga 103718 Query: 437 atcatattattt 448 ||||||| |||| Sbjct: 103717 atcatataattt 103706
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ttcctcggcaatcgcgccaa 143 |||||||||||||||||||| Sbjct: 4620428 ttcctcggcaatcgcgccaa 4620409
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 attttggtaaaattcaattc 117 |||||||||||||||||||| Sbjct: 2952252 attttggtaaaattcaattc 2952271
>gb|AC154414.2| Mus musculus BAC clone RP24-231D24 from 16, complete sequence Length = 157232 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 tctgctacatttaaaagggt 426 |||||||||||||||||||| Sbjct: 141843 tctgctacatttaaaagggt 141824
>gb|AC158600.17| Mus musculus 10 BAC RP24-211K19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 165879 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 tactagtatttataatactt 80 |||||||||||||||||||| Sbjct: 72121 tactagtatttataatactt 72140 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tactagtatttataatactt 80 |||||||||||||||||||| Sbjct: 19820 tactagtatttataatactt 19801
>emb|CR385050.10| Zebrafish DNA sequence from clone DKEY-22I16 in linkage group 1, complete sequence Length = 145760 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 tattttgatttcaatttgtt 463 |||||||||||||||||||| Sbjct: 109311 tattttgatttcaatttgtt 109292
>gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete genome Length = 131183 Score = 40.1 bits (20), Expect = 8.1 Identities = 38/44 (86%) Strand = Plus / Plus Query: 374 cgaatacacatcaattttcgagctccactattgtctgctacatt 417 ||||||||||| | ||| || ||||||||||| ||||| ||||| Sbjct: 84071 cgaatacacataattttacgggctccactattatctgcaacatt 84114 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 233 aattctttacatgtacgtacaattacagctcg 264 ||||||||||| || ||||| ||||||||||| Sbjct: 83933 aattctttacaagtgcgtactattacagctcg 83964 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,590,735 Number of Sequences: 3902068 Number of extensions: 6590735 Number of successful extensions: 138623 Number of sequences better than 10.0: 241 Number of HSP's better than 10.0 without gapping: 257 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 135684 Number of HSP's gapped (non-prelim): 2799 length of query: 596 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 573 effective length of database: 17,143,297,704 effective search space: 9823109584392 effective search space used: 9823109584392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
