ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5g19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ARI2_MOUSE (Q9Z1K6) Protein ariadne-2 homolog (ARI-2) (Triad1 pr... 30 1.6
2ARI2_HUMAN (O95376) Protein ariadne-2 homolog (ARI-2) (Triad1 pr... 30 1.6
3ODPA_YEAST (P16387) Pyruvate dehydrogenase E1 component alpha su... 30 2.1
4FAS_PNECA (P29251) Folic acid synthesis protein [Includes: Dihyd... 29 3.5
5V026_FOWPV (Q9J5H5) Putative ankyrin repeat protein FPV026 28 7.8
6NCAP_IAUDO (P06827) Nucleoprotein 28 7.8
7NCAP_IAMEF (Q08041) Nucleoprotein 28 7.8
8NCAP_IAMEA (Q08031) Nucleoprotein 28 7.8

>ARI2_MOUSE (Q9Z1K6) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)|
           (UbcM4-interacting protein 48)
          Length = 492

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 199 GGRRTHGNEEKQCSILHERLDIVAQLHQAQ 110
           G  +THG+E  +CS   E  DIV Q  QAQ
Sbjct: 327 GDWKTHGSEYYECSRYKENPDIVNQSQQAQ 356



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>ARI2_HUMAN (O95376) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)|
          Length = 493

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 199 GGRRTHGNEEKQCSILHERLDIVAQLHQAQ 110
           G  +THG+E  +CS   E  DIV Q  QAQ
Sbjct: 328 GDWKTHGSEYYECSRYKENPDIVNQSQQAQ 357



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>ODPA_YEAST (P16387) Pyruvate dehydrogenase E1 component alpha subunit,|
           mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
          Length = 420

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 121 AVELQYQVSHVKWNIVSLHCHGFFFRPAASVELVLA 228
           AV ++  ++ +   I S  CHGF F   ASV+ VLA
Sbjct: 121 AVGIENAITKLDSIITSYRCHGFTFMRGASVKAVLA 156



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>FAS_PNECA (P29251) Folic acid synthesis protein [Includes: Dihydroneopterin|
           aldolase (EC 4.1.2.25) (DHNA) (FASA) (FASB);
           2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
           pyrophosphokinase (EC 2.7.6.3)
           (7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
          Length = 740

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 153 KMEHCFSSLPWVLLPPRCKRRTSFGT 230
           K ++CF+ LPW+L P R KR T F T
Sbjct: 666 KSKNCFNGLPWLLGPSR-KRFTGFIT 690



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>V026_FOWPV (Q9J5H5) Putative ankyrin repeat protein FPV026|
          Length = 436

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -1

Query: 220 LVRRLQRGGRRTHGNEEKQCSILHERLDIVAQLHQAQKN*NTTELD*RYLHC 65
           LVRRL  G  +  G    + +I  ER+DI+  L +   N N  E     L C
Sbjct: 51  LVRRLMEGNTKDEGIRVLRMAIKFERIDIIKILLEYGVNVNENEYYEEELTC 102



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>NCAP_IAUDO (P06827) Nucleoprotein|
          Length = 498

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
 Frame = -1

Query: 232 LVPKLVRRLQRG-----------GRRTHGNEEKQCSILHERLDIVAQ 125
           +V +L+R ++RG           GR+T G  E+ C+IL  +    AQ
Sbjct: 189 MVMELIRMIKRGINDRNFWRGENGRKTRGAYERMCNILKGKFQTAAQ 235



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>NCAP_IAMEF (Q08041) Nucleoprotein|
          Length = 498

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
 Frame = -1

Query: 232 LVPKLVRRLQRG-----------GRRTHGNEEKQCSILHERLDIVAQ 125
           +V +L+R ++RG           GR+T G  E+ C+IL  +    AQ
Sbjct: 189 MVMELIRMIKRGINDRNFWRGENGRKTRGAYERMCNILKGKFQTAAQ 235



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>NCAP_IAMEA (Q08031) Nucleoprotein|
          Length = 498

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
 Frame = -1

Query: 232 LVPKLVRRLQRG-----------GRRTHGNEEKQCSILHERLDIVAQ 125
           +V +L+R ++RG           GR+T G  E+ C+IL  +    AQ
Sbjct: 189 MVMELIRMIKRGINDRNFWRGENGRKTRGAYERMCNILKGKFQTAAQ 235


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,479,975
Number of Sequences: 219361
Number of extensions: 604800
Number of successful extensions: 1427
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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