ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480176.1| Oryza sativa (japonica cultivar-group), mRNA 58 1e-05
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
3dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
4dbj|AK070710.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 1e-05
5emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 42 0.69
6emb|AL161517.2|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, ... 42 0.69
7emb|AL049524.1|ATF7L13 Arabidopsis thaliana DNA chromosome 4, BA... 42 0.69
8gb|AF118222.1|F3H7 Arabidopsis thaliana BAC F3H7 42 0.69
9gb|AY756225.1| Verticillium dahliae var. longisporum clone 159 5... 42 0.69
10gb|AC158987.3| Mus musculus BAC clone RP23-366K1 from chromosome... 40 2.7
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 2.7
12gb|AC139174.3| Oryza sativa chromosome 3 BAC OSJNBb0065L20 genom... 40 2.7
13gb|AC106818.2| Homo sapiens chromosome 5 clone RP11-65F13, compl... 40 2.7
14emb|AL096829.17|HSJ595K12 Human DNA sequence from clone RP4-595K... 40 2.7
15gb|AC159883.2| Mus musculus BAC clone RP24-490A17 from chromosom... 40 2.7
16gb|AC098867.3| Homo sapiens BAC clone RP11-493C20 from 4, comple... 40 2.7
17gb|AC093156.2| Homo sapiens chromosome 1 clone RP11-87O11, compl... 40 2.7
18emb|BX510917.5| Zebrafish DNA sequence from clone CH211-250O15 i... 40 2.7
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
20gb|AC114961.2| Homo sapiens chromosome 5 clone RP11-193H19, comp... 40 2.7
21gb|U91319.1|HSU91319 Human chromosome 16p13.11 BAC clone CIT987S... 40 2.7
22gb|AY756257.1| Verticillium dahliae var. longisporum clone 312 5... 40 2.7
23gb|AY756256.1| Verticillium dahliae var. longisporum clone 314 5... 40 2.7
24gb|AY756253.1| Verticillium dahliae var. longisporum clone 316 5... 40 2.7
25gb|AY756252.1| Verticillium dahliae var. longisporum clone 320 5... 40 2.7
26gb|AY756224.1| Verticillium dahliae var. longisporum clone 155 5... 40 2.7
27gb|AY756223.1| Verticillium dahliae var. longisporum clone 156 5... 40 2.7
28gb|AY756206.1| Verticillium dahliae var. longisporum clone 99 5S... 40 2.7
29gb|AY756205.1| Verticillium dahliae var. longisporum clone 94 5S... 40 2.7
30gb|AY756204.1| Verticillium dahliae var. longisporum clone 93 5S... 40 2.7
31gb|AY756203.1| Verticillium dahliae var. longisporum clone 95 5S... 40 2.7
32gb|AY756202.1| Verticillium dahliae var. longisporum clone 96 5S... 40 2.7
33gb|AY756200.1| Verticillium dahliae var. longisporum clone 98 5S... 40 2.7 
>ref|XM_480176.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1130

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 69  actcctatattgacaaaacataaaggagaactt 101
           |||||||||||||||||||| ||||||||||||
Sbjct: 987 actcctatattgacaaaacagaaaggagaactt 955
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                
Query: 69      actcctatattgacaaaacataaaggagaactt 101
               |||||||||||||||||||| ||||||||||||
Sbjct: 3278894 actcctatattgacaaaacagaaaggagaactt 3278926
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>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0438H08
          Length = 148626

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                              
Query: 69    actcctatattgacaaaacataaaggagaactt 101
             |||||||||||||||||||| ||||||||||||
Sbjct: 56461 actcctatattgacaaaacagaaaggagaactt 56493
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>dbj|AK070710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062F08, full
           insert sequence
          Length = 1130

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 69  actcctatattgacaaaacataaaggagaactt 101
           |||||||||||||||||||| ||||||||||||
Sbjct: 987 actcctatattgacaaaacagaaaggagaactt 955
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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 120    atgatcttttcaagttcccaaacat 144
              ||||| |||||||||||||||||||
Sbjct: 587234 atgatgttttcaagttcccaaacat 587258
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>emb|AL161517.2|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 29
          Length = 199861

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 68     tactcctatattgacaaaaca 88
              |||||||||||||||||||||
Sbjct: 128963 tactcctatattgacaaaaca 128943
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>emb|AL049524.1|ATF7L13 Arabidopsis thaliana DNA chromosome 4, BAC clone  F7L13 (ESSA project)
          Length = 95076

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 68    tactcctatattgacaaaaca 88
             |||||||||||||||||||||
Sbjct: 69000 tactcctatattgacaaaaca 68980
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>gb|AF118222.1|F3H7 Arabidopsis thaliana BAC F3H7
          Length = 102216

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 68    tactcctatattgacaaaaca 88
             |||||||||||||||||||||
Sbjct: 77663 tactcctatattgacaaaaca 77683
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>gb|AY756225.1| Verticillium dahliae var. longisporum clone 159 5S nontranscribed
           spacer, genomic sequence
          Length = 391

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 49  ccaacatttctcacacatgtactcc 73
           ||||||||||||||||||| |||||
Sbjct: 100 ccaacatttctcacacatgaactcc 124
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>gb|AC158987.3| Mus musculus BAC clone RP23-366K1 from chromosome 9, complete sequence
          Length = 222125

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     aggagaacttgaagacattt 111
              ||||||||||||||||||||
Sbjct: 217822 aggagaacttgaagacattt 217803
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 180      tgatactgatagaaaagaatcatg 203
                |||||||| |||||||||||||||
Sbjct: 25642797 tgatactgctagaaaagaatcatg 25642820
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>gb|AC139174.3| Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete
             sequence
          Length = 167427

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 180   tgatactgatagaaaagaatcatg 203
             |||||||| |||||||||||||||
Sbjct: 59554 tgatactgctagaaaagaatcatg 59531
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>gb|AC106818.2| Homo sapiens chromosome 5 clone RP11-65F13, complete sequence
          Length = 180056

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 15    aatgaaattaacancaaaagaag 37
             ||||||||||||| |||||||||
Sbjct: 13130 aatgaaattaacaacaaaagaag 13108
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>emb|AL096829.17|HSJ595K12 Human DNA sequence from clone RP4-595K12 on chromosome 1p31.2-31.3
           Contains the 5' end of a novel gene (MGC34032) and a
           ribosomal protein L29 (RPL29) pseudogene, complete
           sequence
          Length = 135983

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 81  acaaaacataaaggagaacttgaa 104
           |||||||||||||||||| |||||
Sbjct: 309 acaaaacataaaggagaatttgaa 332
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>gb|AC159883.2| Mus musculus BAC clone RP24-490A17 from chromosome 9, complete sequence
          Length = 140400

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    aggagaacttgaagacattt 111
             ||||||||||||||||||||
Sbjct: 96067 aggagaacttgaagacattt 96086
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>gb|AC098867.3| Homo sapiens BAC clone RP11-493C20 from 4, complete sequence
          Length = 142314

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 88   ataaaggagaacttgaagac 107
            ||||||||||||||||||||
Sbjct: 2051 ataaaggagaacttgaagac 2032
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>gb|AC093156.2| Homo sapiens chromosome 1 clone RP11-87O11, complete sequence
          Length = 198846

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    acaaaacataaaggagaacttgaa 104
             |||||||||||||||||| |||||
Sbjct: 21537 acaaaacataaaggagaatttgaa 21514
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>emb|BX510917.5| Zebrafish DNA sequence from clone CH211-250O15 in linkage group 5,
              complete sequence
          Length = 140129

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     tcctatattgacaaaacata 90
              ||||||||||||||||||||
Sbjct: 105929 tcctatattgacaaaacata 105948
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 180      tgatactgatagaaaagaatcatg 203
                |||||||| |||||||||||||||
Sbjct: 25734106 tgatactgctagaaaagaatcatg 25734129
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>gb|AC114961.2| Homo sapiens chromosome 5 clone RP11-193H19, complete sequence
          Length = 53552

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 15    aatgaaattaacancaaaagaag 37
             ||||||||||||| |||||||||
Sbjct: 50930 aatgaaattaacaacaaaagaag 50908
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>gb|U91319.1|HSU91319 Human chromosome 16p13.11 BAC clone CIT987SK-98H8 complete sequence
          Length = 125630

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     tgacaaaacataaaggagaa 98
              ||||||||||||||||||||
Sbjct: 123774 tgacaaaacataaaggagaa 123793
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>gb|AY756257.1| Verticillium dahliae var. longisporum clone 312 5S nontranscribed
           spacer, genomic sequence
          Length = 390

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 49  ccaacatttctcacacatgtactc 72
           ||||||||||||||||||| ||||
Sbjct: 100 ccaacatttctcacacatgaactc 123
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>gb|AY756256.1| Verticillium dahliae var. longisporum clone 314 5S nontranscribed
           spacer, genomic sequence
          Length = 404

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 49  ccaacatttctcacacatgtactc 72
           ||||||||||||||||||| ||||
Sbjct: 100 ccaacatttctcacacatgaactc 123
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>gb|AY756253.1| Verticillium dahliae var. longisporum clone 316 5S nontranscribed
           spacer, genomic sequence
          Length = 390

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 49  ccaacatttctcacacatgtactc 72
           ||||||||||||||||||| ||||
Sbjct: 100 ccaacatttctcacacatgaactc 123
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>gb|AY756252.1| Verticillium dahliae var. longisporum clone 320 5S nontranscribed
           spacer, genomic sequence
          Length = 390

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 49  ccaacatttctcacacatgtactc 72
           ||||||||||||||||||| ||||
Sbjct: 100 ccaacatttctcacacatgaactc 123
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>gb|AY756224.1| Verticillium dahliae var. longisporum clone 155 5S nontranscribed
           spacer, genomic sequence
          Length = 391

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 49  ccaacatttctcacacatgtactc 72
           ||||||||||||||||||| ||||
Sbjct: 101 ccaacatttctcacacatgaactc 124
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>gb|AY756223.1| Verticillium dahliae var. longisporum clone 156 5S nontranscribed
           spacer, genomic sequence
          Length = 391

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 49  ccaacatttctcacacatgtactc 72
           ||||||||||||||||||| ||||
Sbjct: 101 ccaacatttctcacacatgaactc 124
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>gb|AY756206.1| Verticillium dahliae var. longisporum clone 99 5S nontranscribed
           spacer, genomic sequence
          Length = 390

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 49  ccaacatttctcacacatgtactc 72
           ||||||||||||||||||| ||||
Sbjct: 100 ccaacatttctcacacatgaactc 123
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>gb|AY756205.1| Verticillium dahliae var. longisporum clone 94 5S nontranscribed
           spacer, genomic sequence
          Length = 404

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 49  ccaacatttctcacacatgtactc 72
           ||||||||||||||||||| ||||
Sbjct: 100 ccaacatttctcacacatgaactc 123
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>gb|AY756204.1| Verticillium dahliae var. longisporum clone 93 5S nontranscribed
           spacer, genomic sequence
          Length = 390

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 49  ccaacatttctcacacatgtactc 72
           ||||||||||||||||||| ||||
Sbjct: 100 ccaacatttctcacacatgaactc 123
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>gb|AY756203.1| Verticillium dahliae var. longisporum clone 95 5S nontranscribed
           spacer, genomic sequence
          Length = 390

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 49  ccaacatttctcacacatgtactc 72
           ||||||||||||||||||| ||||
Sbjct: 100 ccaacatttctcacacatgaactc 123
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>gb|AY756202.1| Verticillium dahliae var. longisporum clone 96 5S nontranscribed
           spacer, genomic sequence
          Length = 391

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 49  ccaacatttctcacacatgtactc 72
           ||||||||||||||||||| ||||
Sbjct: 100 ccaacatttctcacacatgaactc 123
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>gb|AY756200.1| Verticillium dahliae var. longisporum clone 98 5S nontranscribed
           spacer, genomic sequence
          Length = 390

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 49  ccaacatttctcacacatgtactc 72
           ||||||||||||||||||| ||||
Sbjct: 100 ccaacatttctcacacatgaactc 123


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,078,819
Number of Sequences: 3902068
Number of extensions: 2078819
Number of successful extensions: 151755
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 151491
Number of HSP's gapped (non-prelim): 264
length of query: 215
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 193
effective length of database: 17,147,199,772
effective search space: 3309409555996
effective search space used: 3309409555996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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