ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 147 3e-32
2dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic D... 147 3e-32
3dbj|AK105998.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 3e-32
4ref|NM_183704.1| Oryza sativa (japonica cultivar-group), predic... 145 1e-31
5gb|AY165036.1| Lolium perenne methyl pectinesterase mRNA, partia... 137 3e-29
6gb|AY107840.1| Zea mays PCO070891 mRNA sequence 107 2e-20
7gb|AY357183.1| Fragaria x ananassa pectinesterase (PE3) mRNA, pa... 44 0.29
8dbj|AP000943.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 44 0.29
9gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 42 1.1
10gb|AC069328.1|AC069328 Genomic Sequence For Arabidopsis thaliana... 42 1.1
11gb|AC051627.4|AC051627 Genomic Sequence For Arabidopsis thaliana... 42 1.1
12gb|AC007312.1|AC007312 Homo sapiens clone RP11-349E11 from 7p14-... 42 1.1
13ref|XM_864153.1| PREDICTED: Bos taurus similar to peptidylargini... 40 4.5
14gb|BC012862.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypepti... 40 4.5
15gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 4.5
16emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 4.5
17gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosom... 40 4.5
18gb|AC116659.3| Mus musculus BAC clone RP24-147E15 from 7, comple... 40 4.5
19ref|XM_649609.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 4.5
20emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 4.5
21gb|BC008132.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypepti... 40 4.5
22gb|AE011667.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 4.5
23gb|AF499777.1| Xanthomonas axonopodis pv. glycines strain 8ra hr... 40 4.5
24dbj|AK146385.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length... 40 4.5
25gb|U33548.2|XCU33548 Xanthomonas campestris pv. vesicatoria hrp ... 40 4.5
26dbj|AK151786.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 4.5
27dbj|AK152824.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 4.5
28dbj|AK157855.1| Mus musculus erythroblast cDNA, RIKEN full-lengt... 40 4.5
29dbj|AK153359.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 4.5
30dbj|AK150277.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 4.5
31dbj|AK169815.1| Mus musculus 2 days neonate thymus thymic cells ... 40 4.5
32dbj|AK168319.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-... 40 4.5
33dbj|AK167107.1| Mus musculus blastocyst blastocyst cDNA, RIKEN f... 40 4.5
34dbj|AK169350.1| Mus musculus cDNA, RIKEN full-length enriched li... 40 4.5
35dbj|AK075920.1| Mus musculus ES cells cDNA, RIKEN full-length en... 40 4.5
36gb|AY875714.2| Xanthomonas oryzae pv. oryzicola hrp gene cluster... 40 4.5
37dbj|AP002499.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.5
38dbj|AP002841.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.5
39ref|NM_138669.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypep... 40 4.5
40gb|AC126445.5| Mus musculus BAC clone RP23-307P24 from 8, comple... 40 4.5
41emb|AL645911.14| Mouse DNA sequence from clone RP23-25M3 on chro... 40 4.5
42gb|M99173.1|XANHRPA1A Xanthomonas campstris HrpA1 gene, complete... 40 4.5 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  147 bits (74), Expect = 3e-32
 Identities = 143/166 (86%)
 Strand = Plus / Minus

                                                                            
Query: 174      gtcacagcccggcggagaatgggatggacgtgccggcgagccagacgtcgccatcgatga 233
                ||||||||||| ||| ||| |||| |||||||||||||||||| |||||||| |||||||
Sbjct: 11733364 gtcacagcccgacggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatga 11733305

                                                                            
Query: 234      aggagcccaccgtgaaggtgctggcctccgatgcgctggtgatgacgcggtaccccttcc 293
                ||  ||| || ||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 11733304 agttgccgacggtgaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttcc 11733245

                                                              
Query: 294      acgtcaccctgccggacgtgccggcgccgggtcccgtgttctggta 339
                || | |||| |  |||||||  ||| ||||| || |||||||||||
Sbjct: 11733244 acttgacccggttggacgtggaggccccggggccggtgttctggta 11733199
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>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1011A07
          Length = 150590

 Score =  147 bits (74), Expect = 3e-32
 Identities = 143/166 (86%)
 Strand = Plus / Minus

                                                                         
Query: 174   gtcacagcccggcggagaatgggatggacgtgccggcgagccagacgtcgccatcgatga 233
             ||||||||||| ||| ||| |||| |||||||||||||||||| |||||||| |||||||
Sbjct: 72532 gtcacagcccgacggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatga 72473

                                                                         
Query: 234   aggagcccaccgtgaaggtgctggcctccgatgcgctggtgatgacgcggtaccccttcc 293
             ||  ||| || ||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 72472 agttgccgacggtgaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttcc 72413

                                                           
Query: 294   acgtcaccctgccggacgtgccggcgccgggtcccgtgttctggta 339
             || | |||| |  |||||||  ||| ||||| || |||||||||||
Sbjct: 72412 acttgacccggttggacgtggaggccccggggccggtgttctggta 72367
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>dbj|AK105998.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H08, full
            insert sequence
          Length = 1488

 Score =  147 bits (74), Expect = 3e-32
 Identities = 143/166 (86%)
 Strand = Plus / Minus

                                                                        
Query: 174  gtcacagcccggcggagaatgggatggacgtgccggcgagccagacgtcgccatcgatga 233
            ||||||||||| ||| ||| |||| |||||||||||||||||| |||||||| |||||||
Sbjct: 1288 gtcacagcccgacggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatga 1229

                                                                        
Query: 234  aggagcccaccgtgaaggtgctggcctccgatgcgctggtgatgacgcggtaccccttcc 293
            ||  ||| || ||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 1228 agttgccgacggtgaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttcc 1169

                                                          
Query: 294  acgtcaccctgccggacgtgccggcgccgggtcccgtgttctggta 339
            || | |||| |  |||||||  ||| ||||| || |||||||||||
Sbjct: 1168 acttgacccggttggacgtggaggccccggggccggtgttctggta 1123
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>ref|NM_183704.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 888

 Score =  145 bits (73), Expect = 1e-31
 Identities = 142/165 (86%)
 Strand = Plus / Minus

                                                                       
Query: 175 tcacagcccggcggagaatgggatggacgtgccggcgagccagacgtcgccatcgatgaa 234
           |||||||||| ||| ||| |||| |||||||||||||||||| |||||||| ||||||||
Sbjct: 888 tcacagcccgacggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatgaa 829

                                                                       
Query: 235 ggagcccaccgtgaaggtgctggcctccgatgcgctggtgatgacgcggtaccccttcca 294
           |  ||| || ||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 828 gttgccgacggtgaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttcca 769

                                                        
Query: 295 cgtcaccctgccggacgtgccggcgccgggtcccgtgttctggta 339
           | | |||| |  |||||||  ||| ||||| || |||||||||||
Sbjct: 768 cttgacccggttggacgtggaggccccggggccggtgttctggta 724
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>gb|AY165036.1| Lolium perenne methyl pectinesterase mRNA, partial cds
          Length = 970

 Score =  137 bits (69), Expect = 3e-29
 Identities = 141/165 (85%)
 Strand = Plus / Minus

                                                                       
Query: 172 cggtcacagcccggcggagaatgggatggacgtgccggcgagccagacgtcgccatcgat 231
           |||||||| ||||| |||||| |||||||| |||||||| |||||||||||||| |||||
Sbjct: 685 cggtcacaacccggtggagaaggggatggaagtgccggctagccagacgtcgccgtcgat 626

                                                                       
Query: 232 gaaggagcccaccgtgaaggtgctggcctccgatgcgctggtgatgacgcggtacccctt 291
           ||| || ||||| |||||||||||||||||||| | |||| |||| |||||||| |||||
Sbjct: 625 gaatgaccccacagtgaaggtgctggcctccgacgagctgctgatcacgcggtaaccctt 566

                                                        
Query: 292 ccacgtcaccctgccggacgtgccggcgccgggtcccgtgttctg 336
           |||| | |||| |  ||||||||  || ||||  |||||||||||
Sbjct: 565 ccacttgacccggttggacgtgctagctccggcccccgtgttctg 521
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>gb|AY107840.1| Zea mays PCO070891 mRNA sequence
          Length = 977

 Score =  107 bits (54), Expect = 2e-20
 Identities = 81/90 (90%)
 Strand = Plus / Minus

                                                                       
Query: 245 gtgaaggtgctggcctccgatgcgctggtgatgacgcggtaccccttccacgtcaccctg 304
           ||||||| ||||||||| |  |||||||||||||||||||||||||||||| | ||||  
Sbjct: 977 gtgaaggcgctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgc 918

                                         
Query: 305 ccggacgtgccggcgccgggtcccgtgttc 334
           |||||||||||||||||||| |||||||||
Sbjct: 917 ccggacgtgccggcgccgggccccgtgttc 888
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>gb|AY357183.1| Fragaria x ananassa pectinesterase (PE3) mRNA, partial cds
          Length = 767

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 283 gtaccccttccacgtcaccctg 304
           ||||||||||||||||||||||
Sbjct: 522 gtaccccttccacgtcaccctg 501
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>dbj|AP000943.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867G2, complete
             sequence
          Length = 192299

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 123   aggacgaattgggtgctttata 144
             ||||||||||||||||||||||
Sbjct: 89481 aggacgaattgggtgctttata 89460
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 288    ccttccacgtcaccctgccgg 308
              |||||||||||||||||||||
Sbjct: 312389 ccttccacgtcaccctgccgg 312409
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>gb|AC069328.1|AC069328 Genomic Sequence For Arabidopsis thaliana Clone T28N17 From Chromosome
             V, complete sequence
          Length = 75593

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 136   tgctttatatgatatgatgat 156
             |||||||||||||||||||||
Sbjct: 14997 tgctttatatgatatgatgat 15017
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>gb|AC051627.4|AC051627 Genomic Sequence For Arabidopsis thaliana Clone T1A4 From Chromosome V,
             complete sequence
          Length = 85746

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 136   tgctttatatgatatgatgat 156
             |||||||||||||||||||||
Sbjct: 74036 tgctttatatgatatgatgat 74056
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>gb|AC007312.1|AC007312 Homo sapiens clone RP11-349E11 from 7p14-15, complete sequence
          Length = 185652

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 38    aaaagaatgccacaaaactaataagatga 66
             |||||||||||||||||||| ||| ||||
Sbjct: 77595 aaaagaatgccacaaaactactaacatga 77623
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>ref|XM_864153.1| PREDICTED: Bos taurus similar to peptidylarginine deiminase type
           III, transcript variant 2 (LOC508160), mRNA
          Length = 3073

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 288 ccttccacgtcaccctgccggacg 311
           |||||||||||||||||| |||||
Sbjct: 797 ccttccacgtcaccctgctggacg 820
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>gb|BC012862.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, mRNA (cDNA
           clone MGC:6715 IMAGE:3585696), complete cds
          Length = 1488

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 cgagccagacgtcgccatcg 229
           ||||||||||||||||||||
Sbjct: 71  cgagccagacgtcgccatcg 52
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 303     tgccggacgtgccggcgccg 322
               ||||||||||||||||||||
Sbjct: 2455594 tgccggacgtgccggcgccg 2455613
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 253    gctggcctccgatgcgctggtgat 276
              ||||||||||||||||| ||||||
Sbjct: 484206 gctggcctccgatgcgccggtgat 484229
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>gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosome 7, complete sequence
          Length = 198721

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   tgatagaagaagaattggtc 172
             ||||||||||||||||||||
Sbjct: 49412 tgatagaagaagaattggtc 49431
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>gb|AC116659.3| Mus musculus BAC clone RP24-147E15 from 7, complete sequence
          Length = 140476

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   tgatagaagaagaattggtc 172
             ||||||||||||||||||||
Sbjct: 96651 tgatagaagaagaattggtc 96670
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>ref|XM_649609.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (46.t00028)
           partial mRNA
          Length = 528

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 144 atgatatgatgatagaagaa 163
           ||||||||||||||||||||
Sbjct: 461 atgatatgatgatagaagaa 480
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 303     tgccggacgtgccggcgccg 322
               ||||||||||||||||||||
Sbjct: 1928964 tgccggacgtgccggcgccg 1928945
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>gb|BC008132.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, mRNA (cDNA
           clone MGC:6664 IMAGE:3498954), complete cds
          Length = 1489

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 cgagccagacgtcgccatcg 229
           ||||||||||||||||||||
Sbjct: 83  cgagccagacgtcgccatcg 64
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>gb|AE011667.1| Xanthomonas axonopodis pv. citri str. 306,  section 45 of 469 of the
            complete genome
          Length = 11789

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 253  gctggcctccgatgcgctggtgat 276
            ||||||||||||||||| ||||||
Sbjct: 1049 gctggcctccgatgcgccggtgat 1072
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>gb|AF499777.1| Xanthomonas axonopodis pv. glycines strain 8ra hrp pathogenicity
            island, complete sequence
          Length = 29206

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 253  gctggcctccgatgcgctggtgat 276
            ||||||||||||||||| ||||||
Sbjct: 5969 gctggcctccgatgcgccggtgat 5946
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>dbj|AK146385.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library,
           clone:I730067O21 product:DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 48, full insert sequence
          Length = 3115

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 cgagccagacgtcgccatcg 229
           ||||||||||||||||||||
Sbjct: 99  cgagccagacgtcgccatcg 80
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>gb|U33548.2|XCU33548 Xanthomonas campestris pv. vesicatoria hrp gene cluster, partial
            sequence
          Length = 16929

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 253  gctggcctccgatgcgctggtgat 276
            ||||||||||||||||| ||||||
Sbjct: 7005 gctggcctccgatgcgccggtgat 7028
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>dbj|AK151786.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830037I06 product:DEAD
           (Asp-Glu-Ala-Asp) box polypeptide 48, full insert
           sequence
          Length = 1439

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 cgagccagacgtcgccatcg 229
           ||||||||||||||||||||
Sbjct: 65  cgagccagacgtcgccatcg 46
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>dbj|AK152824.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830086N03 product:DEAD
           (Asp-Glu-Ala-Asp) box polypeptide 48, full insert
           sequence
          Length = 1478

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 cgagccagacgtcgccatcg 229
           ||||||||||||||||||||
Sbjct: 99  cgagccagacgtcgccatcg 80
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>dbj|AK157855.1| Mus musculus erythroblast cDNA, RIKEN full-length enriched library,
           clone:K0C0029C12 product:DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 48, full insert sequence
          Length = 1438

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 cgagccagacgtcgccatcg 229
           ||||||||||||||||||||
Sbjct: 59  cgagccagacgtcgccatcg 40
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>dbj|AK153359.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830148I15 product:DEAD
           (Asp-Glu-Ala-Asp) box polypeptide 48, full insert
           sequence
          Length = 1444

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 cgagccagacgtcgccatcg 229
           ||||||||||||||||||||
Sbjct: 65  cgagccagacgtcgccatcg 46
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>dbj|AK150277.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830001F05 product:DEAD
           (Asp-Glu-Ala-Asp) box polypeptide 48, full insert
           sequence
          Length = 1478

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 cgagccagacgtcgccatcg 229
           ||||||||||||||||||||
Sbjct: 99  cgagccagacgtcgccatcg 80
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>dbj|AK169815.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430027B07
            product:DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, full
            insert sequence
          Length = 2868

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 210  cgagccagacgtcgccatcg 229
            ||||||||||||||||||||
Sbjct: 1489 cgagccagacgtcgccatcg 1470
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>dbj|AK168319.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched
           library, clone:I730090F07 product:hypothetical
           ATP-dependent helicase, DEAD-box containing protein,
           full insert sequence
          Length = 1441

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 cgagccagacgtcgccatcg 229
           ||||||||||||||||||||
Sbjct: 63  cgagccagacgtcgccatcg 44
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>dbj|AK167107.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
           library, clone:I1C0031G16 product:hypothetical
           ATP-dependent helicase, DEAD-box containing protein,
           full insert sequence
          Length = 1500

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 cgagccagacgtcgccatcg 229
           ||||||||||||||||||||
Sbjct: 121 cgagccagacgtcgccatcg 102
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>dbj|AK169350.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:I920190H15 product:hypothetical ATP-dependent
           helicase, DEAD-box containing protein, full insert
           sequence
          Length = 1442

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 cgagccagacgtcgccatcg 229
           ||||||||||||||||||||
Sbjct: 63  cgagccagacgtcgccatcg 44
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>dbj|AK075920.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:2400003O03 product:EUKARYOTIC INITIATION FACTOR
           4A-LIKE NUK-34 homolog [Homo sapiens], full insert
           sequence
          Length = 1438

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 cgagccagacgtcgccatcg 229
           ||||||||||||||||||||
Sbjct: 59  cgagccagacgtcgccatcg 40
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>gb|AY875714.2| Xanthomonas oryzae pv. oryzicola hrp gene cluster, partial sequence
          Length = 9612

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 253  gctggcctccgatgcgctggtgat 276
            ||||||||||||||||| ||||||
Sbjct: 1999 gctggcctccgatgcgccggtgat 1976
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>dbj|AP002499.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-107P10, complete
            sequence
          Length = 176429

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 67   atcaggcaggtgcccctccg 86
            ||||||||||||||||||||
Sbjct: 5273 atcaggcaggtgcccctccg 5292
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>dbj|AP002841.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-239P2, complete
              sequence
          Length = 176485

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     atcaggcaggtgcccctccg 86
              ||||||||||||||||||||
Sbjct: 157838 atcaggcaggtgcccctccg 157857
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>ref|NM_138669.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 (Ddx48),
           mRNA
          Length = 1489

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 cgagccagacgtcgccatcg 229
           ||||||||||||||||||||
Sbjct: 83  cgagccagacgtcgccatcg 64
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>gb|AC126445.5| Mus musculus BAC clone RP23-307P24 from 8, complete sequence
          Length = 167770

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   ccgtgaaggtgctggcctcc 262
             ||||||||||||||||||||
Sbjct: 74702 ccgtgaaggtgctggcctcc 74683
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>emb|AL645911.14| Mouse DNA sequence from clone RP23-25M3 on chromosome 11, complete
            sequence
          Length = 244653

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 210  cgagccagacgtcgccatcg 229
            ||||||||||||||||||||
Sbjct: 6896 cgagccagacgtcgccatcg 6915
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>gb|M99173.1|XANHRPA1A Xanthomonas campstris HrpA1 gene, complete cds
          Length = 1824

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 253  gctggcctccgatgcgctggtgat 276
            ||||||||||||||||| ||||||
Sbjct: 978  gctggcctccgatgcgccggtgat 1001


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,635,116
Number of Sequences: 3902068
Number of extensions: 2635116
Number of successful extensions: 42662
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42463
Number of HSP's gapped (non-prelim): 195
length of query: 339
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 317
effective length of database: 17,147,199,772
effective search space: 5435662327724
effective search space used: 5435662327724
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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