ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5f24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK107127.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 2e-68
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 82 2e-12
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
5emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 48 0.026
6gb|AE012001.1| Xanthomonas axonopodis pv. citri str. 306, secti... 48 0.026
7gb|AE012166.1| Xanthomonas campestris pv. campestris str. ATCC 3... 48 0.026
8gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 48 0.026
9gb|AC127595.3| Mus musculus BAC clone RP23-49I18 from chromosome... 40 6.4
10emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete... 40 6.4
11emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 40 6.4
12emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple... 40 6.4
13emb|BX571873.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 6.4
14emb|AJ515144.2|AXY515144 Achromobacter xylosoxidans plasmid pA81... 40 6.4
15emb|CR859681.1| Pongo pygmaeus mRNA; cDNA DKFZp469D0713 (from cl... 40 6.4
16gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.4
17gb|AC092493.1|AC092493 Drosophila melanogaster, chromosome X, re... 40 6.4
18gb|AC022347.2|AC022347 Drosophila melanogaster, chromosome X, re... 40 6.4
19gb|AE003505.3| Drosophila melanogaster chromosome X, section 57 ... 40 6.4
20dbj|AP002478.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.4
21gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster... 40 6.4 
>dbj|AK107127.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B12, full
           insert sequence
          Length = 1160

 Score =  268 bits (135), Expect = 2e-68
 Identities = 264/307 (85%)
 Strand = Plus / Minus

                                                                       
Query: 167 cgattgcttatgggctctgagcgcttccaggatgctttcaacccacccttcgagtccagg 226
           |||||||  |||||||||||||||||| |||||||||||||||||||| || ||||| ||
Sbjct: 888 cgattgcccatgggctctgagcgcttcaaggatgctttcaacccacccgtcaagtcccgg 829

                                                                       
Query: 227 ggttgcaggatagtatatgctctccaggccgagtttcttggccgctgacgccgtcgtctc 286
           ||| | |||||| |||||||||| |||||| | |||||| || ||||| || ||||||||
Sbjct: 828 ggtggtaggataatatatgctcttcaggccaaatttcttagctgctgaggcagtcgtctc 769

                                                                       
Query: 287 gcctatgcaggcgaccgagttgctccagtcgtcaacccgtgacgtgagatttagccacgc 346
           |||||||||||| |  | ||||| ||||| ||||||  |||| |  ||||||||||| ||
Sbjct: 768 gcctatgcaggcaatggcgttgccccagttgtcaacttgtgaagcaagatttagccaagc 709

                                                                       
Query: 347 ccggagtgcagaaggagaagctactgcaacaactggtgctgaaagagcaagatttaaaat 406
            ||||| ||||||||||||||||||||||||||||| |||||||||||| | ||||| ||
Sbjct: 708 tcggagagcagaaggagaagctactgcaacaactggagctgaaagagcaggctttaatat 649

                                                                       
Query: 407 ctgtgggtctacatcttgtacaggtacagttgaataggtgttcagtcttgtcacctcaaa 466
             | || || ||||| ||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct: 648 tagcggatcgacatcctgtacagatacagttgtatatgtgttcagtcttgtcacctcaaa 589

                  
Query: 467 tcctcga 473
           |||||||
Sbjct: 588 tcctcga 582
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                                
Query: 347     ccggagtgcagaaggagaagctactgcaacaactggtgctgaaagagca 395
               |||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4481371 ccggagagcagaaggagaagctactgcaacaactggagctgaaagagca 4481323



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 103/125 (82%)
 Strand = Plus / Minus

                                                                           
Query: 219     agtccaggggttgcaggatagtatatgctctccaggccgagtttcttggccgctgacgcc 278
               ||||| ||||| | |||||| |||||||||| |||||| | |||||| || ||||| || 
Sbjct: 4481927 agtcccggggtggtaggataatatatgctcttcaggccaaatttcttagctgctgaggca 4481868

                                                                           
Query: 279     gtcgtctcgcctatgcaggcgaccgagttgctccagtcgtcaacccgtgacgtgagattt 338
               |||||||||||||||||||| |  | ||||| ||||| ||||||  |||| |  ||||||
Sbjct: 4481867 gtcgtctcgcctatgcaggcaatggcgttgccccagttgtcaacttgtgaagcaagattt 4481808

                    
Query: 339     agcca 343
               |||||
Sbjct: 4481807 agcca 4481803



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                              
Query: 167     cgattgcttatgggctctgagcgcttccaggatgctttcaacccacc 213
               |||||||  |||||||||||||||||| |||||||||||||||||||
Sbjct: 4482146 cgattgcccatgggctctgagcgcttcaaggatgctttcaacccacc 4482100



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                          
Query: 431     tacagttgaataggtgttcagtcttgtcacctcaaatcctcga 473
               |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 4480962 tacagttgtatatgtgttcagtcttgtcacctcaaatcctcga 4480920
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                                
Query: 347     ccggagtgcagaaggagaagctactgcaacaactggtgctgaaagagca 395
               |||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4481486 ccggagagcagaaggagaagctactgcaacaactggagctgaaagagca 4481438



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 103/125 (82%)
 Strand = Plus / Minus

                                                                           
Query: 219     agtccaggggttgcaggatagtatatgctctccaggccgagtttcttggccgctgacgcc 278
               ||||| ||||| | |||||| |||||||||| |||||| | |||||| || ||||| || 
Sbjct: 4482042 agtcccggggtggtaggataatatatgctcttcaggccaaatttcttagctgctgaggca 4481983

                                                                           
Query: 279     gtcgtctcgcctatgcaggcgaccgagttgctccagtcgtcaacccgtgacgtgagattt 338
               |||||||||||||||||||| |  | ||||| ||||| ||||||  |||| |  ||||||
Sbjct: 4481982 gtcgtctcgcctatgcaggcaatggcgttgccccagttgtcaacttgtgaagcaagattt 4481923

                    
Query: 339     agcca 343
               |||||
Sbjct: 4481922 agcca 4481918



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                              
Query: 167     cgattgcttatgggctctgagcgcttccaggatgctttcaacccacc 213
               |||||||  |||||||||||||||||| |||||||||||||||||||
Sbjct: 4482261 cgattgcccatgggctctgagcgcttcaaggatgctttcaacccacc 4482215



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                          
Query: 431     tacagttgaataggtgttcagtcttgtcacctcaaatcctcga 473
               |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 4481077 tacagttgtatatgtgttcagtcttgtcacctcaaatcctcga 4481035
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>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0042J17, complete sequence
          Length = 171442

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                              
Query: 347   ccggagtgcagaaggagaagctactgcaacaactggtgctgaaagagca 395
             |||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 86663 ccggagagcagaaggagaagctactgcaacaactggagctgaaagagca 86615



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 103/125 (82%)
 Strand = Plus / Minus

                                                                         
Query: 219   agtccaggggttgcaggatagtatatgctctccaggccgagtttcttggccgctgacgcc 278
             ||||| ||||| | |||||| |||||||||| |||||| | |||||| || ||||| || 
Sbjct: 87219 agtcccggggtggtaggataatatatgctcttcaggccaaatttcttagctgctgaggca 87160

                                                                         
Query: 279   gtcgtctcgcctatgcaggcgaccgagttgctccagtcgtcaacccgtgacgtgagattt 338
             |||||||||||||||||||| |  | ||||| ||||| ||||||  |||| |  ||||||
Sbjct: 87159 gtcgtctcgcctatgcaggcaatggcgttgccccagttgtcaacttgtgaagcaagattt 87100

                  
Query: 339   agcca 343
             |||||
Sbjct: 87099 agcca 87095



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                            
Query: 167   cgattgcttatgggctctgagcgcttccaggatgctttcaacccacc 213
             |||||||  |||||||||||||||||| |||||||||||||||||||
Sbjct: 87438 cgattgcccatgggctctgagcgcttcaaggatgctttcaacccacc 87392



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                        
Query: 431   tacagttgaataggtgttcagtcttgtcacctcaaatcctcga 473
             |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 86254 tacagttgtatatgtgttcagtcttgtcacctcaaatcctcga 86212
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 249     tccaggccgagtttcttggccgct 272
               ||||||||||||||||||||||||
Sbjct: 4203086 tccaggccgagtttcttggccgct 4203109
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>gb|AE012001.1| Xanthomonas axonopodis pv. citri str. 306,  section 379 of 469 of the
            complete genome
          Length = 12670

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 249  tccaggccgagtttcttggccgct 272
            ||||||||||||||||||||||||
Sbjct: 5634 tccaggccgagtttcttggccgct 5657
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>gb|AE012166.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 74 of
            460 of the complete genome
          Length = 13138

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 249  tccaggccgagtttcttggccgct 272
            ||||||||||||||||||||||||
Sbjct: 9603 tccaggccgagtttcttggccgct 9580
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 249     tccaggccgagtttcttggccgct 272
               ||||||||||||||||||||||||
Sbjct: 4220540 tccaggccgagtttcttggccgct 4220563
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>gb|AC127595.3| Mus musculus BAC clone RP23-49I18 from chromosome 7, complete sequence
          Length = 239586

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     atgagaaagaaagaaggttg 102
              ||||||||||||||||||||
Sbjct: 181980 atgagaaagaaagaaggttg 181999
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>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 388    aaagagcaagatttaaaatctgtg 411
              |||| |||||||||||||||||||
Sbjct: 940618 aaagtgcaagatttaaaatctgtg 940595
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>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 388    aaagagcaagatttaaaatctgtg 411
              |||| |||||||||||||||||||
Sbjct: 935454 aaagtgcaagatttaaaatctgtg 935431
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>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 388    aaagagcaagatttaaaatctgtg 411
              |||| |||||||||||||||||||
Sbjct: 961336 aaagtgcaagatttaaaatctgtg 961313
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>emb|BX571873.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              15/17
          Length = 349107

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 280    tcgtctcgcctatgcaggcgaccg 303
              ||||||| ||||||||||||||||
Sbjct: 198318 tcgtctcccctatgcaggcgaccg 198295
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>emb|AJ515144.2|AXY515144 Achromobacter xylosoxidans plasmid pA81, strain A8
          Length = 98192

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    gaggctgcagcggccggccg 33
             ||||||||||||||||||||
Sbjct: 93885 gaggctgcagcggccggccg 93866
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>emb|CR859681.1| Pongo pygmaeus mRNA; cDNA DKFZp469D0713 (from clone DKFZp469D0713)
          Length = 1872

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 390  agagcaagatttaaaatctg 409
            ||||||||||||||||||||
Sbjct: 1011 agagcaagatttaaaatctg 1030
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 23      gcggccggccggtcaatcag 42
               ||||||||||||||||||||
Sbjct: 3061010 gcggccggccggtcaatcag 3061029
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>gb|AC092493.1|AC092493 Drosophila melanogaster, chromosome X, region 15C-15D, BAC clone
              BACR10J22, complete sequence
          Length = 157457

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    aaccgagaaggaaaattcaa 129
              ||||||||||||||||||||
Sbjct: 157020 aaccgagaaggaaaattcaa 157039
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>gb|AC022347.2|AC022347 Drosophila melanogaster, chromosome X, region 15F-15F, BAC clone
             BACR35G15, complete sequence
          Length = 168615

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   aaccgagaaggaaaattcaa 129
             ||||||||||||||||||||
Sbjct: 31206 aaccgagaaggaaaattcaa 31187
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>gb|AE003505.3| Drosophila melanogaster chromosome X, section 57 of 74 of the complete
              sequence
          Length = 314205

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    aaccgagaaggaaaattcaa 129
              ||||||||||||||||||||
Sbjct: 197598 aaccgagaaggaaaattcaa 197579
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>dbj|AP002478.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-874J12, complete
              sequence
          Length = 226147

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 390    agagcaagatttaaaatctg 409
              ||||||||||||||||||||
Sbjct: 135472 agagcaagatttaaaatctg 135453
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>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome
          Length = 1267782

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    agaaggaaaattcaaagaga 134
              ||||||||||||||||||||
Sbjct: 731869 agaaggaaaattcaaagaga 731850


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,043,124
Number of Sequences: 3902068
Number of extensions: 5043124
Number of successful extensions: 91549
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91337
Number of HSP's gapped (non-prelim): 212
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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